Wall clock time and date at job start Tue Mar 31 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99926 * 2 1 4 4 H 1.48493 * 109.47008 * 270.00100 * 3 2 1 5 5 H 1.48498 * 109.47076 * 30.00073 * 3 2 1 6 6 H 1.48501 * 109.46867 * 149.99838 * 3 2 1 7 7 C 1.38815 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99966 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00120 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.47299 * 324.99388 * 10 9 7 12 12 C 1.53003 * 109.47756 * 84.99749 * 10 9 7 13 13 C 1.52996 * 109.47235 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47123 * 299.99617 * 13 12 10 15 15 H 1.08999 * 109.47017 * 300.00201 * 14 13 12 16 16 N 1.46501 * 109.46801 * 180.02562 * 14 13 12 17 17 C 1.34774 * 120.00330 * 85.00242 * 16 14 13 18 18 O 1.21279 * 119.99865 * 359.97438 * 17 16 14 19 19 C 1.50695 * 120.00345 * 180.02562 * 17 16 14 20 20 H 1.09007 * 109.86769 * 304.55211 * 19 17 16 21 21 C 1.54103 * 109.88226 * 65.71016 * 19 17 16 22 22 C 1.54990 * 104.24900 * 121.59194 * 21 19 17 23 23 C 1.54989 * 102.01477 * 20.67136 * 22 21 19 24 24 H 1.08995 * 110.62154 * 81.75077 * 23 22 21 25 25 C 1.50696 * 110.61944 * 204.59597 * 23 22 21 26 26 N 1.34777 * 120.00076 * 292.82334 * 25 23 22 27 27 O 1.21281 * 120.00074 * 112.81836 * 25 23 22 28 28 O 1.43742 * 109.88129 * 183.54828 * 19 17 16 29 29 C 1.53001 * 109.47104 * 60.00503 * 14 13 12 30 30 C 1.52998 * 109.47083 * 299.99805 * 29 14 13 31 31 H 0.96998 * 119.99784 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00344 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.46621 * 300.00210 * 12 10 9 34 34 H 1.08994 * 109.46818 * 59.99735 * 12 10 9 35 35 H 1.09000 * 109.46501 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47181 * 60.00389 * 13 12 10 37 37 H 0.97001 * 119.99889 * 265.00071 * 16 14 13 38 38 H 1.08995 * 110.49106 * 240.13176 * 21 19 17 39 39 H 1.09002 * 110.48310 * 2.65260 * 21 19 17 40 40 H 1.08997 * 110.84071 * 262.54066 * 22 21 19 41 41 H 1.09003 * 111.04480 * 138.89082 * 22 21 19 42 42 H 0.97001 * 120.00485 * 180.02562 * 26 25 23 43 43 H 0.97005 * 119.99790 * 359.72082 * 26 25 23 44 44 H 1.08998 * 109.46881 * 59.99423 * 29 14 13 45 45 H 1.08998 * 109.46972 * 179.97438 * 29 14 13 46 46 H 1.08990 * 109.47234 * 179.97438 * 30 29 14 47 47 H 1.08999 * 109.47107 * 300.00344 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 1 2.9693 -3.5503 -0.5904 12 6 2.4210 -4.0363 1.4355 13 6 3.1865 -5.3610 1.4353 14 6 2.3102 -6.4563 0.8244 15 1 1.3991 -6.5632 1.4131 16 7 3.0430 -7.7249 0.8248 17 6 3.0332 -8.5085 1.9213 18 8 2.4182 -8.1632 2.9079 19 6 3.7875 -9.8130 1.9219 20 1 3.4594 -10.4311 1.0861 21 6 5.3011 -9.5434 1.8157 22 6 5.8962 -10.2034 3.0855 23 6 4.7841 -11.2091 3.4778 24 1 4.8663 -12.1218 2.8876 25 6 4.8482 -11.5235 4.9501 26 7 5.8993 -12.2040 5.4488 27 8 3.9541 -11.1642 5.6865 28 8 3.5630 -10.5069 3.1606 29 6 1.9473 -6.0769 -0.6127 30 6 1.1818 -4.7522 -0.6126 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 3.0456 -3.2561 1.8706 34 1 1.5099 -4.1428 2.0242 35 1 3.4453 -5.6311 2.4591 36 1 4.0976 -5.2540 0.8467 37 1 3.5352 -8.0008 0.0358 38 1 5.7097 -10.0097 0.9193 39 1 5.4981 -8.4713 1.8106 40 1 6.0474 -9.4642 3.8721 41 1 6.8272 -10.7224 2.8572 42 1 5.9405 -12.4068 6.3964 43 1 6.6126 -12.4949 4.8591 44 1 2.8585 -5.9699 -1.2013 45 1 1.3234 -6.8574 -1.0481 46 1 0.9237 -4.4816 -1.6364 47 1 0.2707 -4.8591 -0.0239 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034732946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:33 Heat of formation + Delta-G solvation = -119.593093 kcal Electronic energy + Delta-G solvation = -27805.521152 eV Core-core repulsion = 23794.796135 eV Total energy + Delta-G solvation = -4010.725018 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.98438 -39.80077 -38.60871 -37.56514 -34.85568 -34.24023 -33.21254 -32.45294 -31.01276 -30.39141 -30.04671 -27.35185 -25.11495 -23.51666 -22.64972 -22.33052 -21.13737 -21.00886 -20.38827 -19.48400 -18.31713 -17.82779 -17.08398 -16.98551 -16.69661 -16.36743 -15.38336 -15.17260 -14.99644 -14.85851 -14.57347 -14.14664 -13.98022 -13.74657 -13.70382 -13.50874 -13.02202 -12.62106 -12.53931 -12.28065 -12.18261 -11.95947 -11.79146 -11.56186 -11.39031 -11.01728 -10.80117 -10.76461 -10.70685 -10.63473 -10.17471 -10.15813 -10.14035 -10.08061 -9.73868 -9.67541 -9.49467 -8.96872 -8.82480 -6.91331 -5.72926 -3.01336 2.16101 2.42562 2.55299 3.03517 3.45329 3.50397 3.52365 3.63099 3.87347 4.20813 4.26925 4.41579 4.47100 4.61576 4.62268 4.83310 4.94487 4.97777 5.06648 5.10565 5.29535 5.31265 5.44143 5.54302 5.63048 5.69872 5.75281 5.87128 5.89787 6.03705 6.11937 6.26080 6.28350 6.32031 6.34747 6.50253 6.59679 6.68066 6.75591 6.83045 7.01611 7.18341 7.43382 7.73102 7.82735 8.18223 8.45957 9.56743 10.15759 10.50182 11.49840 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.002119 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.315363 B =13209.658720 C =13544.721996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.178 3.822 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.146 3.854 15 H 0.088 0.912 16 N -0.724 5.724 17 C 0.508 3.492 18 O -0.509 6.509 19 C 0.057 3.943 20 H 0.099 0.901 21 C -0.145 4.145 22 C -0.142 4.142 23 C 0.055 3.945 24 H 0.101 0.899 25 C 0.520 3.480 26 N -0.853 5.853 27 O -0.511 6.511 28 O -0.316 6.316 29 C -0.117 4.117 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.397 0.603 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.406 0.594 43 H 0.401 0.599 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.345 -28.894 0.762 33.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.174 4.174 13 C -0.163 4.163 14 C 0.043 3.957 15 H 0.106 0.894 16 N -0.377 5.377 17 C 0.292 3.708 18 O -0.383 6.383 19 C -0.004 4.004 20 H 0.117 0.883 21 C -0.183 4.183 22 C -0.180 4.180 23 C -0.007 4.007 24 H 0.118 0.882 25 C 0.303 3.697 26 N -0.420 5.420 27 O -0.383 6.383 28 O -0.232 6.232 29 C -0.156 4.156 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.230 0.770 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.238 0.762 43 H 0.229 0.771 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.083 -28.145 1.952 31.992 hybrid contribution 1.000 0.537 -0.371 1.194 sum 16.083 -27.608 1.581 31.990 Atomic orbital electron populations 1.69664 1.05077 1.25574 1.57847 1.24749 0.95518 0.97664 1.03216 0.86207 0.78656 0.84009 0.77431 1.21803 1.21819 1.20823 1.19234 0.90942 0.84167 1.42400 0.91253 1.42431 1.05809 0.99798 1.88542 1.20237 0.94260 0.85982 0.92759 0.93639 1.22227 0.99826 0.94467 1.00834 1.21893 0.98542 0.95426 1.00400 1.21129 0.95514 0.81534 0.97569 0.89398 1.46069 1.53748 1.22030 1.15833 1.20309 0.81702 0.85146 0.83628 1.90789 1.41754 1.72892 1.32833 1.22734 0.95510 0.92924 0.89275 0.88335 1.22980 0.92709 1.03603 0.99056 1.23145 0.97903 0.98444 0.98473 1.23036 0.86585 0.97362 0.93708 0.88175 1.20153 0.82053 0.77729 0.89757 1.43717 1.24417 1.60251 1.13614 1.90845 1.37195 1.50249 1.60046 1.89178 1.31022 1.64263 1.38770 1.21739 1.00806 0.98293 0.94758 1.21757 0.98999 0.93452 1.01779 0.93561 0.78293 0.91820 0.92452 0.92416 0.92344 0.76988 0.88924 0.89111 0.89499 0.88757 0.76229 0.77105 0.91575 0.91853 0.91340 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.59 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.26 5.12 -53.42 -0.27 -18.53 16 10 C 0.18 3.47 2.77 -67.93 -0.19 3.28 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.13 -2.45 5.50 -26.73 -0.15 -2.60 16 13 C -0.12 -1.84 5.49 -26.73 -0.15 -1.99 16 14 C 0.15 1.94 2.45 -67.93 -0.17 1.77 16 15 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 16 N -0.72 -7.52 5.06 -53.81 -0.27 -7.79 16 17 C 0.51 6.55 6.91 -10.99 -0.08 6.47 16 18 O -0.51 -9.55 16.19 -14.01 -0.23 -9.78 16 19 C 0.06 0.51 3.84 -27.31 -0.10 0.41 16 20 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 21 C -0.15 -0.78 6.62 -25.10 -0.17 -0.94 16 22 C -0.14 -0.72 6.59 -24.63 -0.16 -0.89 16 23 C 0.05 0.41 3.76 -26.83 -0.10 0.31 16 24 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 25 C 0.52 4.91 7.47 -10.99 -0.08 4.83 16 26 N -0.85 -3.49 8.87 31.22 0.28 -3.21 16 27 O -0.51 -8.03 17.40 -13.51 -0.24 -8.26 16 28 O -0.32 -3.95 10.02 -64.30 -0.64 -4.59 16 29 C -0.12 -1.42 5.39 -26.73 -0.14 -1.56 16 30 C -0.12 -1.93 5.39 -26.73 -0.14 -2.08 16 31 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.38 10.30 7.80 -40.82 -0.32 9.99 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 2.64 8.60 -40.82 -0.35 2.29 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.09 0.57 7.69 -51.93 -0.40 0.17 16 40 H 0.09 0.61 8.05 -51.93 -0.42 0.19 16 41 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.41 1.43 8.93 -40.82 -0.36 1.07 16 43 H 0.40 0.13 8.83 -40.82 -0.36 -0.23 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -40.15 383.63 -9.41 -49.56 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.64 Total: 7.31 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.87 Total: -0.27 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.46 Total: -57.34 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -1.11 Total: -22.63 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -40.15 -9.41 -49.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034732946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.035 kcal (2) G-P(sol) polarization free energy of solvation -40.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds