Wall clock time and date at job start Tue Mar 31 2020 05:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48498 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47249 * 299.99909 * 3 2 1 6 6 H 1.48502 * 109.47320 * 59.99739 * 3 2 1 7 7 C 1.38810 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99704 * 163.08215 * 7 2 1 9 9 N 1.36929 * 120.00504 * 343.07950 * 7 2 1 10 10 C 1.46932 * 120.62771 * 331.81446 * 9 7 2 11 11 C 1.53168 * 108.76807 * 233.62717 * 10 9 7 12 12 C 1.53041 * 109.32684 * 305.36049 * 11 10 9 13 13 H 1.08999 * 109.45642 * 181.38294 * 12 11 10 14 14 N 1.46497 * 109.46056 * 301.35223 * 12 11 10 15 15 C 1.34775 * 120.00052 * 275.03523 * 14 12 11 16 16 O 1.21272 * 120.00486 * 359.97438 * 15 14 12 17 17 C 1.50704 * 119.99644 * 179.97438 * 15 14 12 18 18 N 1.46507 * 109.46957 * 179.97438 * 17 15 14 19 19 C 1.34770 * 119.99928 * 180.02562 * 18 17 15 20 20 O 1.21283 * 120.00278 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00182 * 179.97438 * 19 18 17 22 22 C 1.53780 * 113.61871 * 179.97438 * 21 19 18 23 23 C 1.53785 * 87.17124 * 220.06086 * 22 21 19 24 24 C 1.53781 * 87.08123 * 25.38985 * 23 22 21 25 25 C 1.53038 * 109.52929 * 61.37114 * 12 11 10 26 26 H 1.08994 * 109.50078 * 58.62327 * 25 12 11 27 27 O 1.42898 * 109.49402 * 178.69138 * 25 12 11 28 28 C 1.46921 * 120.63399 * 151.83735 * 9 7 2 29 29 H 0.97005 * 120.00196 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58743 * 353.41659 * 10 9 7 31 31 H 1.08997 * 109.58430 * 113.69943 * 10 9 7 32 32 H 1.08999 * 109.48080 * 185.40831 * 11 10 9 33 33 H 1.09000 * 109.50116 * 65.31778 * 11 10 9 34 34 H 0.97001 * 119.99848 * 95.03031 * 14 12 11 35 35 H 1.08994 * 109.47612 * 59.99783 * 17 15 14 36 36 H 1.08999 * 109.47323 * 299.99102 * 17 15 14 37 37 H 0.97002 * 119.99990 * 359.97438 * 18 17 15 38 38 H 1.09007 * 112.90688 * 311.24977 * 21 19 18 39 39 H 1.08995 * 113.61585 * 105.46999 * 22 21 19 40 40 H 1.08998 * 113.61183 * 334.65194 * 22 21 19 41 41 H 1.09001 * 113.60777 * 139.94053 * 23 22 21 42 42 H 1.08995 * 113.61401 * 270.75299 * 23 22 21 43 43 H 1.08996 * 113.61051 * 89.11764 * 24 23 22 44 44 H 1.08998 * 113.61018 * 219.93179 * 24 23 22 45 45 H 0.96708 * 113.99875 * 179.97438 * 27 25 12 46 46 H 1.08999 * 109.58542 * 6.57704 * 28 9 7 47 47 H 1.09005 * 109.70219 * 246.22635 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3701 -2.3622 0.3462 10 6 0.2264 -2.3399 1.2684 11 6 0.4986 -3.3185 2.4148 12 6 0.8133 -4.7004 1.8373 13 1 0.9833 -5.4042 2.6520 14 7 -0.3161 -5.1583 1.0244 15 6 -1.3583 -5.7816 1.6090 16 8 -1.3610 -5.9638 2.8079 17 6 -2.5203 -6.2522 0.7727 18 7 -3.5151 -6.8938 1.6360 19 6 -4.6467 -7.3952 1.1028 20 8 -4.8420 -7.3149 -0.0915 21 6 -5.6697 -8.0558 1.9907 22 6 -6.9022 -8.5740 1.2309 23 6 -7.7482 -8.0663 2.4105 24 6 -6.6169 -7.0621 2.6875 25 6 2.0683 -4.6168 0.9655 26 1 2.9035 -4.2531 1.5640 27 8 2.3789 -5.9134 0.4513 28 6 1.8140 -3.6529 -0.1976 29 1 -0.4851 0.8401 -0.0004 30 1 0.0994 -1.3341 1.6687 31 1 -0.6772 -2.6385 0.7370 32 1 -0.3817 -3.3832 3.0542 33 1 1.3485 -2.9665 2.9996 34 1 -0.3139 -5.0128 0.0653 35 1 -2.1676 -6.9685 0.0307 36 1 -2.9735 -5.3992 0.2676 37 1 -3.3588 -6.9585 2.5911 38 1 -5.2330 -8.7902 2.6676 39 1 -6.9200 -9.6577 1.1152 40 1 -7.0934 -8.0455 0.2970 41 1 -8.6839 -7.5971 2.1066 42 1 -7.8821 -8.8044 3.2013 43 1 -6.7292 -6.1194 2.1522 44 1 -6.4056 -6.9242 3.7479 45 1 3.1648 -5.9352 -0.1119 46 1 2.7344 -3.5134 -0.7646 47 1 1.0420 -4.0622 -0.8492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100123864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:35 Heat of formation + Delta-G solvation = -82.167445 kcal Electronic energy + Delta-G solvation = -28300.887688 eV Core-core repulsion = 24291.785568 eV Total energy + Delta-G solvation = -4009.102120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.54129 -39.83540 -38.18249 -37.43754 -35.50767 -34.53195 -34.08532 -31.87898 -30.42398 -29.03679 -28.27718 -26.14781 -25.82641 -25.18177 -22.42647 -21.99831 -21.22900 -20.71012 -19.65815 -18.83106 -18.12850 -17.20125 -16.71528 -16.34070 -16.27351 -15.90384 -15.52683 -15.21870 -14.97744 -14.47686 -14.39488 -14.29200 -13.84840 -13.43751 -13.32006 -13.04446 -12.84022 -12.70542 -12.63298 -12.33387 -12.10371 -12.05728 -11.73152 -11.45038 -11.23756 -10.94749 -10.81414 -10.75494 -10.67106 -10.41821 -10.27244 -10.01663 -9.93610 -9.87067 -9.70425 -9.49336 -9.23486 -8.74639 -8.57363 -6.83051 -5.91922 -3.36745 2.50232 2.73457 2.85099 3.29659 3.38118 3.39625 3.55738 4.23998 4.30601 4.32510 4.45546 4.48288 4.54267 4.78731 4.97625 5.22689 5.23789 5.27105 5.31615 5.38206 5.40415 5.42564 5.50905 5.52296 5.61446 5.63353 5.69145 5.81932 5.87890 5.97860 6.12422 6.16813 6.24733 6.38349 6.45466 6.57922 6.61188 6.81106 7.20332 7.42018 7.52504 7.67121 7.68532 7.85272 8.12602 8.30505 8.33116 9.06140 9.68259 10.23377 11.16222 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.002699 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.289459 B =10373.384391 C =11318.172344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.171 3.829 11 C -0.153 4.153 12 C 0.167 3.833 13 H 0.080 0.920 14 N -0.697 5.697 15 C 0.511 3.489 16 O -0.551 6.551 17 C 0.098 3.902 18 N -0.714 5.714 19 C 0.523 3.477 20 O -0.543 6.543 21 C -0.138 4.138 22 C -0.117 4.117 23 C -0.142 4.142 24 C -0.124 4.124 25 C 0.075 3.925 26 H 0.067 0.933 27 O -0.571 6.571 28 C 0.118 3.882 29 H 0.255 0.745 30 H 0.090 0.910 31 H 0.022 0.978 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.405 0.595 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.412 0.588 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.375 0.625 46 H 0.059 0.941 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.558 -15.153 4.598 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.046 3.954 11 C -0.193 4.193 12 C 0.062 3.938 13 H 0.098 0.902 14 N -0.348 5.348 15 C 0.296 3.704 16 O -0.430 6.430 17 C -0.030 4.030 18 N -0.369 5.369 19 C 0.310 3.690 20 O -0.420 6.420 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.180 4.180 24 C -0.162 4.162 25 C 0.014 3.986 26 H 0.085 0.915 27 O -0.376 6.376 28 C -0.010 4.010 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.241 0.759 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.249 0.751 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.221 0.779 46 H 0.078 0.922 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.295 -15.216 4.919 18.015 hybrid contribution 1.171 1.191 -0.372 1.711 sum -7.124 -14.026 4.547 16.375 Atomic orbital electron populations 1.70036 1.05297 1.25673 1.53189 1.25073 0.95313 0.98560 1.00385 0.86209 0.79337 0.83729 0.77367 1.20210 1.21630 1.21446 1.19185 0.92569 0.84557 1.42588 0.91527 1.44010 1.35988 1.01046 1.50044 1.20789 0.88521 0.98336 0.87775 1.22589 1.01571 0.94735 1.00434 1.20867 0.83583 0.96566 0.92773 0.90225 1.45849 1.19186 1.57705 1.12081 1.20341 0.83759 0.77833 0.88458 1.90649 1.79709 1.57710 1.14899 1.21078 0.88752 0.99769 0.93366 1.45744 1.19149 1.59532 1.12456 1.20530 0.81640 0.78105 0.88767 1.90699 1.77452 1.58057 1.15750 1.22819 0.94084 1.00014 0.98978 1.22808 0.93051 1.01292 0.98368 1.22831 0.97663 0.98860 0.98630 1.22865 0.94925 0.97509 1.00888 1.22749 0.96111 0.83085 0.96621 0.91486 1.86474 1.50696 1.30436 1.69978 1.21541 0.98601 0.87715 0.93126 0.93500 0.89224 0.96033 0.91841 0.91368 0.75870 0.88506 0.88236 0.75059 0.86860 0.91052 0.88629 0.90938 0.89895 0.89531 0.90490 0.77873 0.92204 0.95930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.97 11.20 55.49 0.62 -24.35 16 2 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 3 Si 0.90 20.85 29.59 -169.99 -5.03 15.82 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.26 -6.68 9.58 -15.06 -0.14 -6.83 16 8 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 9 N -0.59 -13.47 2.99 -172.33 -0.52 -13.98 16 10 C 0.17 3.83 5.04 -3.72 -0.02 3.81 16 11 C -0.15 -2.85 5.77 -26.62 -0.15 -3.01 16 12 C 0.17 2.81 2.47 -67.89 -0.17 2.65 16 13 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 14 N -0.70 -10.91 4.16 -53.77 -0.22 -11.13 16 15 C 0.51 7.80 7.86 -10.98 -0.09 7.72 16 16 O -0.55 -9.63 15.33 5.56 0.09 -9.55 16 17 C 0.10 1.28 6.15 -5.19 -0.03 1.24 16 18 N -0.71 -8.74 5.53 -61.47 -0.34 -9.08 16 19 C 0.52 6.55 7.36 -10.99 -0.08 6.47 16 20 O -0.54 -8.65 15.90 5.55 0.09 -8.56 16 21 C -0.14 -1.24 4.16 -90.87 -0.38 -1.62 16 22 C -0.12 -1.01 7.40 -25.92 -0.19 -1.20 16 23 C -0.14 -0.98 8.09 -25.92 -0.21 -1.19 16 24 C -0.12 -0.99 7.64 -25.83 -0.20 -1.19 16 25 C 0.08 1.21 3.36 -26.61 -0.09 1.12 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 O -0.57 -8.09 13.21 -35.23 -0.47 -8.55 16 28 C 0.12 2.18 5.84 -3.71 -0.02 2.16 16 29 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 31 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.41 6.13 6.87 -40.82 -0.28 5.84 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.41 4.76 7.44 -40.82 -0.30 4.45 16 38 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.99 7.43 -51.93 -0.39 0.60 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.37 3.76 9.08 45.56 0.41 4.17 16 46 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 47 H 0.02 0.42 6.65 -51.93 -0.35 0.08 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -31.73 377.35 -8.57 -40.30 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -6.62 Total: 13.20 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -1.86 Total: 10.20 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.46 Total: -58.54 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.29 Total: -26.66 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.73 -8.57 -40.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100123864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.866 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds