Wall clock time and date at job start Tue Mar 31 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48498 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47249 * 299.99909 * 3 2 1 6 6 H 1.48502 * 109.47320 * 59.99739 * 3 2 1 7 7 C 1.38810 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99704 * 163.08215 * 7 2 1 9 9 N 1.36929 * 120.00504 * 343.07950 * 7 2 1 10 10 C 1.46932 * 120.62771 * 331.81446 * 9 7 2 11 11 C 1.53168 * 108.76807 * 233.62717 * 10 9 7 12 12 C 1.53041 * 109.32684 * 305.36049 * 11 10 9 13 13 H 1.08999 * 109.45642 * 181.38294 * 12 11 10 14 14 N 1.46497 * 109.46056 * 301.35223 * 12 11 10 15 15 C 1.34775 * 120.00052 * 275.03523 * 14 12 11 16 16 O 1.21272 * 120.00486 * 359.97438 * 15 14 12 17 17 C 1.50704 * 119.99644 * 179.97438 * 15 14 12 18 18 N 1.46507 * 109.46957 * 179.97438 * 17 15 14 19 19 C 1.34770 * 119.99928 * 180.02562 * 18 17 15 20 20 O 1.21283 * 120.00278 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00182 * 179.97438 * 19 18 17 22 22 C 1.53780 * 113.61871 * 179.97438 * 21 19 18 23 23 C 1.53785 * 87.17124 * 220.06086 * 22 21 19 24 24 C 1.53781 * 87.08123 * 25.38985 * 23 22 21 25 25 C 1.53038 * 109.52929 * 61.37114 * 12 11 10 26 26 H 1.08994 * 109.50078 * 58.62327 * 25 12 11 27 27 O 1.42898 * 109.49402 * 178.69138 * 25 12 11 28 28 C 1.46921 * 120.63399 * 151.83735 * 9 7 2 29 29 H 0.97005 * 120.00196 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58743 * 353.41659 * 10 9 7 31 31 H 1.08997 * 109.58430 * 113.69943 * 10 9 7 32 32 H 1.08999 * 109.48080 * 185.40831 * 11 10 9 33 33 H 1.09000 * 109.50116 * 65.31778 * 11 10 9 34 34 H 0.97001 * 119.99848 * 95.03031 * 14 12 11 35 35 H 1.08994 * 109.47612 * 59.99783 * 17 15 14 36 36 H 1.08999 * 109.47323 * 299.99102 * 17 15 14 37 37 H 0.97002 * 119.99990 * 359.97438 * 18 17 15 38 38 H 1.09007 * 112.90688 * 311.24977 * 21 19 18 39 39 H 1.08995 * 113.61585 * 105.46999 * 22 21 19 40 40 H 1.08998 * 113.61183 * 334.65194 * 22 21 19 41 41 H 1.09001 * 113.60777 * 139.94053 * 23 22 21 42 42 H 1.08995 * 113.61401 * 270.75299 * 23 22 21 43 43 H 1.08996 * 113.61051 * 89.11764 * 24 23 22 44 44 H 1.08998 * 113.61018 * 219.93179 * 24 23 22 45 45 H 0.96708 * 113.99875 * 179.97438 * 27 25 12 46 46 H 1.08999 * 109.58542 * 6.57704 * 28 9 7 47 47 H 1.09005 * 109.70219 * 246.22635 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3701 -2.3622 0.3462 10 6 0.2264 -2.3399 1.2684 11 6 0.4986 -3.3185 2.4148 12 6 0.8133 -4.7004 1.8373 13 1 0.9833 -5.4042 2.6520 14 7 -0.3161 -5.1583 1.0244 15 6 -1.3583 -5.7816 1.6090 16 8 -1.3610 -5.9638 2.8079 17 6 -2.5203 -6.2522 0.7727 18 7 -3.5151 -6.8938 1.6360 19 6 -4.6467 -7.3952 1.1028 20 8 -4.8420 -7.3149 -0.0915 21 6 -5.6697 -8.0558 1.9907 22 6 -6.9022 -8.5740 1.2309 23 6 -7.7482 -8.0663 2.4105 24 6 -6.6169 -7.0621 2.6875 25 6 2.0683 -4.6168 0.9655 26 1 2.9035 -4.2531 1.5640 27 8 2.3789 -5.9134 0.4513 28 6 1.8140 -3.6529 -0.1976 29 1 -0.4851 0.8401 -0.0004 30 1 0.0994 -1.3341 1.6687 31 1 -0.6772 -2.6385 0.7370 32 1 -0.3817 -3.3832 3.0542 33 1 1.3485 -2.9665 2.9996 34 1 -0.3139 -5.0128 0.0653 35 1 -2.1676 -6.9685 0.0307 36 1 -2.9735 -5.3992 0.2676 37 1 -3.3588 -6.9585 2.5911 38 1 -5.2330 -8.7902 2.6676 39 1 -6.9200 -9.6577 1.1152 40 1 -7.0934 -8.0455 0.2970 41 1 -8.6839 -7.5971 2.1066 42 1 -7.8821 -8.8044 3.2013 43 1 -6.7292 -6.1194 2.1522 44 1 -6.4056 -6.9242 3.7479 45 1 3.1648 -5.9352 -0.1119 46 1 2.7344 -3.5134 -0.7646 47 1 1.0420 -4.0622 -0.8492 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100123864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:34 Heat of formation + Delta-G solvation = -106.606183 kcal Electronic energy + Delta-G solvation = -28301.947431 eV Core-core repulsion = 24291.785568 eV Total energy + Delta-G solvation = -4010.161863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.61506 -40.99608 -39.48117 -38.33147 -36.94092 -35.79773 -35.41154 -33.59086 -32.02256 -30.43736 -29.46638 -27.34787 -26.68455 -26.42893 -23.98313 -23.62375 -22.33289 -21.81029 -20.44912 -20.30785 -19.15349 -18.79243 -17.99793 -17.54175 -17.42850 -17.01546 -16.83212 -16.46466 -16.29776 -15.82733 -15.70465 -15.48438 -15.38873 -14.93711 -14.47375 -14.42143 -14.00054 -13.79075 -13.57126 -13.53725 -13.39073 -13.23994 -13.02267 -12.92773 -12.77715 -12.37737 -12.15983 -12.15692 -12.00529 -11.84696 -11.43063 -11.32517 -11.29180 -11.08447 -10.99661 -10.80612 -10.52827 -10.30463 -10.07149 -8.71177 -7.90162 -5.36361 1.45913 1.45981 1.49404 1.55881 1.58313 1.76874 2.43562 2.49144 3.14298 3.26622 3.52605 3.58046 3.65392 3.66371 3.81102 3.90549 3.93055 4.05486 4.17463 4.23542 4.27338 4.35746 4.38133 4.52580 4.68124 4.70953 4.80308 4.86499 4.87385 4.92958 5.03566 5.04303 5.10528 5.13690 5.17540 5.22468 5.40285 5.46257 5.53473 5.62782 5.70291 6.35047 6.41407 6.45842 6.88237 7.07153 7.11717 7.14764 7.80611 8.31180 9.15946 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016719 B = 0.002699 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.289459 B =10373.384391 C =11318.172344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.048 4.048 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.261 4.261 8 H 0.072 0.928 9 N -0.602 5.602 10 C 0.183 3.817 11 C -0.139 4.139 12 C 0.170 3.830 13 H 0.080 0.920 14 N -0.697 5.697 15 C 0.514 3.486 16 O -0.571 6.571 17 C 0.103 3.897 18 N -0.710 5.710 19 C 0.520 3.480 20 O -0.582 6.582 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.125 4.125 25 C 0.095 3.905 26 H 0.071 0.929 27 O -0.570 6.570 28 C 0.117 3.883 29 H 0.249 0.751 30 H 0.052 0.948 31 H 0.004 0.996 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.408 0.592 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.417 0.583 38 H 0.139 0.861 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.396 0.604 46 H 0.068 0.932 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 -16.809 5.374 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.391 4.391 8 H 0.090 0.910 9 N -0.327 5.327 10 C 0.058 3.942 11 C -0.179 4.179 12 C 0.065 3.935 13 H 0.099 0.901 14 N -0.347 5.347 15 C 0.300 3.700 16 O -0.451 6.451 17 C -0.024 4.024 18 N -0.365 5.365 19 C 0.308 3.692 20 O -0.462 6.462 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.167 4.167 24 C -0.163 4.163 25 C 0.034 3.966 26 H 0.089 0.911 27 O -0.378 6.378 28 C -0.010 4.010 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.022 0.978 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.245 0.755 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.255 0.745 38 H 0.157 0.843 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.246 0.754 46 H 0.087 0.913 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.591 -16.907 5.693 19.387 hybrid contribution 0.995 1.643 -0.655 2.029 sum -6.596 -15.264 5.038 17.375 Atomic orbital electron populations 1.70178 1.06634 1.25769 1.55120 1.25773 0.95971 1.01463 1.01142 0.85262 0.78819 0.80105 0.76555 1.18856 1.22205 1.22023 1.19522 0.92933 0.85651 1.41034 0.91035 1.44185 1.35844 1.02017 1.50645 1.20491 0.88021 0.97162 0.88560 1.22379 1.01596 0.95032 0.98919 1.20741 0.84459 0.95108 0.93208 0.90148 1.45823 1.19119 1.57650 1.12134 1.20617 0.83884 0.77187 0.88274 1.90636 1.80138 1.58512 1.15847 1.21012 0.88132 1.00014 0.93290 1.45777 1.18972 1.59141 1.12587 1.21210 0.81817 0.77457 0.88692 1.90680 1.78214 1.59672 1.17623 1.22989 0.93176 1.00635 0.98904 1.22813 0.93471 1.01794 0.98034 1.22822 0.97102 0.98626 0.98151 1.22881 0.95147 0.96851 1.01414 1.22340 0.95730 0.83289 0.95224 0.91070 1.86447 1.52157 1.28702 1.70468 1.21690 0.98829 0.86241 0.94201 0.94190 0.92923 0.97805 0.92056 0.91073 0.75525 0.87380 0.88557 0.74472 0.84317 0.89855 0.91039 0.90626 0.87744 0.91241 0.88907 0.75429 0.91350 0.95640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.10 11.20 21.65 0.24 -52.86 16 2 C -0.05 -2.54 4.92 84.86 0.42 -2.12 16 3 Si 0.96 43.20 29.59 68.60 2.03 45.23 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.26 -13.37 9.58 84.03 0.81 -12.56 16 8 H 0.07 3.53 7.89 -2.91 -0.02 3.50 16 9 N -0.60 -27.47 2.99 -699.14 -2.09 -29.57 16 10 C 0.18 8.32 5.04 86.35 0.44 8.76 16 11 C -0.14 -5.13 5.77 30.66 0.18 -4.96 16 12 C 0.17 5.49 2.47 45.02 0.11 5.60 16 13 H 0.08 2.67 7.58 -2.39 -0.02 2.65 16 14 N -0.70 -21.09 4.16 -442.42 -1.84 -22.93 16 15 C 0.51 15.27 7.86 87.66 0.69 15.95 16 16 O -0.57 -19.39 15.33 -3.00 -0.05 -19.43 16 17 C 0.10 2.64 6.15 85.63 0.53 3.16 16 18 N -0.71 -16.87 5.53 -466.78 -2.58 -19.45 16 19 C 0.52 12.78 7.36 87.66 0.65 13.42 16 20 O -0.58 -18.78 15.90 -3.04 -0.05 -18.83 16 21 C -0.14 -2.26 4.16 -10.95 -0.05 -2.30 16 22 C -0.12 -1.99 7.40 31.12 0.23 -1.76 16 23 C -0.13 -1.52 8.09 31.12 0.25 -1.27 16 24 C -0.13 -1.82 7.64 31.18 0.24 -1.58 16 25 C 0.10 2.85 3.36 30.67 0.10 2.95 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 O -0.57 -14.37 13.21 -148.98 -1.97 -16.34 16 28 C 0.12 4.14 5.84 86.36 0.50 4.65 16 29 H 0.25 13.88 8.31 -92.70 -0.77 13.11 16 30 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 31 H 0.00 0.19 7.74 -2.39 -0.02 0.17 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 34 H 0.41 11.95 6.87 -92.71 -0.64 11.31 16 35 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.42 9.16 7.44 -92.71 -0.69 8.47 16 38 H 0.14 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.51 7.43 -2.39 -0.02 1.49 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.40 6.52 9.08 -74.05 -0.67 5.85 16 46 H 0.07 2.30 7.93 -2.39 -0.02 2.28 16 47 H 0.03 0.91 6.65 -2.38 -0.02 0.90 16 Total: -1.00 -68.62 377.35 -2.20 -70.83 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.99 Total: 35.40 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 5.09 Total: 27.95 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -6.27 Total: -124.81 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -2.06 Total: -54.60 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -68.62 -2.20 -70.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100123864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.779 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds