Wall clock time and date at job start Tue Mar 31 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48493 * 109.47484 * 270.00107 * 3 2 1 5 5 H 1.48503 * 109.47169 * 30.00333 * 3 2 1 6 6 H 1.48506 * 109.47138 * 149.99745 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99592 * 163.06942 * 7 2 1 9 9 N 1.36933 * 120.00216 * 343.07025 * 7 2 1 10 10 C 1.46927 * 120.63022 * 151.82741 * 9 7 2 11 11 C 1.53188 * 108.89428 * 126.33925 * 10 9 7 12 12 C 1.53358 * 109.15126 * 54.57704 * 11 10 9 13 13 H 1.08990 * 109.40938 * 178.67950 * 12 11 10 14 14 N 1.46499 * 109.42949 * 58.75542 * 12 11 10 15 15 C 1.34778 * 120.00169 * 84.86566 * 14 12 11 16 16 O 1.21285 * 119.99839 * 0.02562 * 15 14 12 17 17 C 1.50694 * 120.00480 * 179.97438 * 15 14 12 18 18 N 1.46501 * 109.47395 * 180.02562 * 17 15 14 19 19 C 1.34769 * 120.00010 * 179.97438 * 18 17 15 20 20 O 1.21284 * 120.00489 * 0.02562 * 19 18 17 21 21 C 1.50709 * 119.99932 * 180.02562 * 19 18 17 22 22 C 1.53783 * 113.61000 * 277.49643 * 21 19 18 23 23 C 1.53780 * 87.07961 * 220.02139 * 22 21 19 24 24 C 1.53773 * 87.08271 * 25.43211 * 23 22 21 25 25 C 1.53041 * 109.60555 * 298.71665 * 12 11 10 26 26 H 1.08998 * 109.49362 * 301.41603 * 25 12 11 27 27 O 1.42894 * 109.52179 * 181.34105 * 25 12 11 28 28 C 1.46927 * 120.63353 * 331.84389 * 9 7 2 29 29 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58516 * 246.19772 * 10 9 7 31 31 H 1.09000 * 109.58539 * 6.47832 * 10 9 7 32 32 H 1.08999 * 109.49809 * 174.65694 * 11 10 9 33 33 H 1.09002 * 109.50218 * 294.75539 * 11 10 9 34 34 H 0.97001 * 120.00407 * 264.86732 * 14 12 11 35 35 H 1.09005 * 109.47157 * 300.00298 * 17 15 14 36 36 H 1.09006 * 109.47009 * 60.00254 * 17 15 14 37 37 H 0.97004 * 119.99706 * 0.02562 * 18 17 15 38 38 H 1.08991 * 112.84817 * 48.80096 * 21 19 18 39 39 H 1.09005 * 113.61523 * 334.56862 * 22 21 19 40 40 H 1.08995 * 113.61436 * 105.47594 * 22 21 19 41 41 H 1.09009 * 113.61382 * 270.88671 * 23 22 21 42 42 H 1.08996 * 113.61855 * 139.98305 * 23 22 21 43 43 H 1.09002 * 113.61878 * 220.01823 * 24 23 22 44 44 H 1.09008 * 113.61514 * 89.11754 * 24 23 22 45 45 H 0.96706 * 113.99907 * 180.13960 * 27 25 12 46 46 H 1.09002 * 109.58387 * 353.37717 * 28 9 7 47 47 H 1.09004 * 109.58558 * 113.65693 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3699 -2.3625 0.3443 10 6 1.8136 -3.6528 -0.2008 11 6 2.0697 -4.6198 0.9593 12 6 0.8118 -4.7022 1.8327 13 1 0.9813 -5.4071 2.6464 14 7 -0.3175 -5.1587 1.0187 15 6 -0.5190 -6.4771 0.8248 16 8 0.2344 -7.2857 1.3246 17 6 -1.6809 -6.9468 -0.0119 18 7 -1.6813 -8.4107 -0.0692 19 6 -2.6363 -9.0575 -0.7664 20 8 -3.4951 -8.4278 -1.3468 21 6 -2.6370 -10.5635 -0.8248 22 6 -1.6831 -11.1392 -1.8848 23 6 -2.7779 -12.1737 -2.1945 24 6 -3.7897 -11.1470 -1.6589 25 6 0.4973 -3.3209 2.4118 26 1 1.3471 -2.9699 2.9972 27 8 -0.6567 -3.4060 3.2500 28 6 0.2260 -2.3409 1.2661 29 1 -0.4849 0.8401 -0.0004 30 1 1.0399 -4.0599 -0.8518 31 1 2.7329 -3.5126 -0.7694 32 1 2.3076 -5.6073 0.5641 33 1 2.9047 -4.2564 1.5584 34 1 -0.9203 -4.5121 0.6193 35 1 -2.6134 -6.6008 0.4342 36 1 -1.5890 -6.5434 -1.0204 37 1 -0.9947 -8.9144 0.3953 38 1 -2.5310 -11.0252 0.1567 39 1 -1.4828 -10.4552 -2.7096 40 1 -0.7764 -11.5753 -1.4655 41 1 -2.7095 -13.0768 -1.5879 42 1 -2.8912 -12.3846 -3.2579 43 1 -4.5837 -11.5893 -1.0572 44 1 -4.1653 -10.4651 -2.4219 45 1 -0.9153 -2.5644 3.6500 46 1 0.0992 -1.3355 1.6675 47 1 -0.6776 -2.6386 0.7341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100123866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:37 Heat of formation + Delta-G solvation = -82.784809 kcal Electronic energy + Delta-G solvation = -28279.773892 eV Core-core repulsion = 24270.645001 eV Total energy + Delta-G solvation = -4009.128891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.56941 -39.83912 -38.14528 -37.45465 -35.35862 -34.56023 -34.11762 -32.10556 -30.04447 -29.09358 -28.40472 -26.16999 -25.85923 -25.18751 -22.48190 -21.90914 -21.23677 -20.71429 -19.68178 -18.83009 -18.14440 -17.10785 -16.66106 -16.39194 -16.31694 -15.93335 -15.55407 -15.24141 -14.97259 -14.53216 -14.37836 -14.09445 -13.80320 -13.55882 -13.33262 -13.05467 -12.84668 -12.73946 -12.63084 -12.33469 -12.15474 -11.91051 -11.74456 -11.47480 -11.15222 -11.08437 -10.86588 -10.84469 -10.70177 -10.50329 -10.29051 -10.05898 -9.90924 -9.85641 -9.62779 -9.40510 -9.26196 -8.79767 -8.60480 -6.83746 -5.94357 -3.38049 2.47744 2.70306 2.82796 3.28539 3.36519 3.38277 3.54451 4.21023 4.29886 4.35243 4.45224 4.51074 4.51647 4.77897 4.95771 5.20250 5.23643 5.28696 5.33743 5.35633 5.38850 5.39703 5.49188 5.58005 5.61942 5.66622 5.75163 5.79253 5.86048 5.95954 6.09848 6.15888 6.21300 6.34884 6.35798 6.63873 6.71432 6.83728 6.98753 7.34638 7.39308 7.65647 7.68779 8.02800 8.10158 8.28823 8.31433 9.04114 9.66784 10.22314 11.13923 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.002475 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.733125 B =11310.008550 C =11568.816215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.145 3.855 11 C -0.144 4.144 12 C 0.166 3.834 13 H 0.080 0.920 14 N -0.697 5.697 15 C 0.510 3.490 16 O -0.552 6.552 17 C 0.097 3.903 18 N -0.714 5.714 19 C 0.523 3.477 20 O -0.542 6.542 21 C -0.138 4.138 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.118 4.118 25 C 0.066 3.934 26 H 0.063 0.937 27 O -0.573 6.573 28 C 0.145 3.855 29 H 0.255 0.745 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.408 0.592 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.412 0.588 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.377 0.623 46 H 0.093 0.907 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.704 -18.333 1.005 18.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.018 3.982 11 C -0.184 4.184 12 C 0.061 3.939 13 H 0.098 0.902 14 N -0.348 5.348 15 C 0.295 3.705 16 O -0.432 6.432 17 C -0.030 4.030 18 N -0.369 5.369 19 C 0.309 3.691 20 O -0.419 6.419 21 C -0.159 4.159 22 C -0.162 4.162 23 C -0.180 4.180 24 C -0.155 4.155 25 C 0.006 3.994 26 H 0.081 0.919 27 O -0.378 6.378 28 C 0.018 3.982 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.244 0.756 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.249 0.751 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.224 0.776 46 H 0.111 0.889 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.845 -18.887 0.776 19.290 hybrid contribution 0.474 1.766 0.273 1.849 sum -3.371 -17.121 1.049 17.481 Atomic orbital electron populations 1.70009 1.05262 1.25777 1.53566 1.25074 0.95340 0.98565 1.00557 0.86282 0.79164 0.83381 0.77856 1.21271 1.21502 1.20423 1.19178 0.92704 0.84549 1.42129 0.91441 1.43956 1.35715 1.01889 1.49606 1.20921 0.97982 0.86432 0.92827 1.22459 0.96421 1.00284 0.99271 1.20909 0.85662 0.94720 0.92589 0.90239 1.45913 1.30663 1.06437 1.51809 1.20363 0.85878 0.83170 0.81094 1.90649 1.47838 1.53664 1.51007 1.21081 0.98227 0.82202 1.01490 1.45747 1.31546 1.06246 1.53381 1.20543 0.80621 0.90038 0.77893 1.90704 1.37459 1.68728 1.44989 1.22796 1.00749 0.91361 1.00985 1.22836 0.97125 0.98309 0.97922 1.22836 0.96267 0.97132 1.01748 1.22815 0.95662 0.97689 0.99378 1.22929 0.87848 0.95704 0.92954 0.91926 1.86403 1.48249 1.36947 1.66200 1.21402 0.89529 0.98553 0.88677 0.93461 0.96235 0.92443 0.91683 0.91043 0.75568 0.88389 0.88331 0.75076 0.86842 0.89557 0.90514 0.89878 0.90934 0.91011 0.88614 0.77606 0.88922 0.95668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 11.20 55.49 0.62 -23.88 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 20.64 29.59 -169.99 -5.03 15.61 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.26 -6.59 9.58 -15.06 -0.14 -6.73 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 9 N -0.59 -13.47 2.99 -172.32 -0.52 -13.99 16 10 C 0.14 2.83 6.25 -3.71 -0.02 2.81 16 11 C -0.14 -2.45 5.80 -26.45 -0.15 -2.60 16 12 C 0.17 2.80 2.47 -67.72 -0.17 2.63 16 13 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 14 N -0.70 -10.89 4.15 -53.61 -0.22 -11.12 16 15 C 0.51 7.59 7.86 -10.99 -0.09 7.51 16 16 O -0.55 -9.37 15.33 5.55 0.09 -9.28 16 17 C 0.10 1.24 6.15 -5.20 -0.03 1.21 16 18 N -0.71 -8.47 5.53 -61.47 -0.34 -8.81 16 19 C 0.52 6.37 7.35 -10.98 -0.08 6.29 16 20 O -0.54 -8.51 15.90 5.55 0.09 -8.42 16 21 C -0.14 -1.20 4.15 -90.95 -0.38 -1.58 16 22 C -0.12 -0.93 7.63 -25.92 -0.20 -1.13 16 23 C -0.14 -0.93 8.08 -25.92 -0.21 -1.14 16 24 C -0.12 -0.98 7.41 -25.92 -0.19 -1.17 16 25 C 0.07 1.17 3.36 -26.62 -0.09 1.08 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 O -0.57 -9.31 13.21 -35.23 -0.47 -9.77 16 28 C 0.15 3.07 4.62 -3.71 -0.02 3.06 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 31 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.41 6.40 6.87 -40.82 -0.28 6.12 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.41 4.57 7.44 -40.82 -0.30 4.27 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.96 7.43 -51.92 -0.39 0.58 16 45 H 0.38 4.89 9.08 45.56 0.41 5.30 16 46 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 47 H 0.03 0.56 6.65 -51.93 -0.35 0.21 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -31.07 377.35 -8.57 -39.63 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -6.62 Total: 14.10 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -1.86 Total: 10.25 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.46 Total: -57.80 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.29 Total: -27.48 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.07 -8.57 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100123866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.151 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds