Wall clock time and date at job start Tue Mar 31 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48493 * 109.47484 * 270.00107 * 3 2 1 5 5 H 1.48503 * 109.47169 * 30.00333 * 3 2 1 6 6 H 1.48506 * 109.47138 * 149.99745 * 3 2 1 7 7 C 1.38816 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99592 * 163.06942 * 7 2 1 9 9 N 1.36933 * 120.00216 * 343.07025 * 7 2 1 10 10 C 1.46927 * 120.63022 * 151.82741 * 9 7 2 11 11 C 1.53188 * 108.89428 * 126.33925 * 10 9 7 12 12 C 1.53358 * 109.15126 * 54.57704 * 11 10 9 13 13 H 1.08990 * 109.40938 * 178.67950 * 12 11 10 14 14 N 1.46499 * 109.42949 * 58.75542 * 12 11 10 15 15 C 1.34778 * 120.00169 * 84.86566 * 14 12 11 16 16 O 1.21285 * 119.99839 * 0.02562 * 15 14 12 17 17 C 1.50694 * 120.00480 * 179.97438 * 15 14 12 18 18 N 1.46501 * 109.47395 * 180.02562 * 17 15 14 19 19 C 1.34769 * 120.00010 * 179.97438 * 18 17 15 20 20 O 1.21284 * 120.00489 * 0.02562 * 19 18 17 21 21 C 1.50709 * 119.99932 * 180.02562 * 19 18 17 22 22 C 1.53783 * 113.61000 * 277.49643 * 21 19 18 23 23 C 1.53780 * 87.07961 * 220.02139 * 22 21 19 24 24 C 1.53773 * 87.08271 * 25.43211 * 23 22 21 25 25 C 1.53041 * 109.60555 * 298.71665 * 12 11 10 26 26 H 1.08998 * 109.49362 * 301.41603 * 25 12 11 27 27 O 1.42894 * 109.52179 * 181.34105 * 25 12 11 28 28 C 1.46927 * 120.63353 * 331.84389 * 9 7 2 29 29 H 0.96997 * 119.99488 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58516 * 246.19772 * 10 9 7 31 31 H 1.09000 * 109.58539 * 6.47832 * 10 9 7 32 32 H 1.08999 * 109.49809 * 174.65694 * 11 10 9 33 33 H 1.09002 * 109.50218 * 294.75539 * 11 10 9 34 34 H 0.97001 * 120.00407 * 264.86732 * 14 12 11 35 35 H 1.09005 * 109.47157 * 300.00298 * 17 15 14 36 36 H 1.09006 * 109.47009 * 60.00254 * 17 15 14 37 37 H 0.97004 * 119.99706 * 0.02562 * 18 17 15 38 38 H 1.08991 * 112.84817 * 48.80096 * 21 19 18 39 39 H 1.09005 * 113.61523 * 334.56862 * 22 21 19 40 40 H 1.08995 * 113.61436 * 105.47594 * 22 21 19 41 41 H 1.09009 * 113.61382 * 270.88671 * 23 22 21 42 42 H 1.08996 * 113.61855 * 139.98305 * 23 22 21 43 43 H 1.09002 * 113.61878 * 220.01823 * 24 23 22 44 44 H 1.09008 * 113.61514 * 89.11754 * 24 23 22 45 45 H 0.96706 * 113.99907 * 180.13960 * 27 25 12 46 46 H 1.09002 * 109.58387 * 353.37717 * 28 9 7 47 47 H 1.09004 * 109.58558 * 113.65693 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3699 -2.3625 0.3443 10 6 1.8136 -3.6528 -0.2008 11 6 2.0697 -4.6198 0.9593 12 6 0.8118 -4.7022 1.8327 13 1 0.9813 -5.4071 2.6464 14 7 -0.3175 -5.1587 1.0187 15 6 -0.5190 -6.4771 0.8248 16 8 0.2344 -7.2857 1.3246 17 6 -1.6809 -6.9468 -0.0119 18 7 -1.6813 -8.4107 -0.0692 19 6 -2.6363 -9.0575 -0.7664 20 8 -3.4951 -8.4278 -1.3468 21 6 -2.6370 -10.5635 -0.8248 22 6 -1.6831 -11.1392 -1.8848 23 6 -2.7779 -12.1737 -2.1945 24 6 -3.7897 -11.1470 -1.6589 25 6 0.4973 -3.3209 2.4118 26 1 1.3471 -2.9699 2.9972 27 8 -0.6567 -3.4060 3.2500 28 6 0.2260 -2.3409 1.2661 29 1 -0.4849 0.8401 -0.0004 30 1 1.0399 -4.0599 -0.8518 31 1 2.7329 -3.5126 -0.7694 32 1 2.3076 -5.6073 0.5641 33 1 2.9047 -4.2564 1.5584 34 1 -0.9203 -4.5121 0.6193 35 1 -2.6134 -6.6008 0.4342 36 1 -1.5890 -6.5434 -1.0204 37 1 -0.9947 -8.9144 0.3953 38 1 -2.5310 -11.0252 0.1567 39 1 -1.4828 -10.4552 -2.7096 40 1 -0.7764 -11.5753 -1.4655 41 1 -2.7095 -13.0768 -1.5879 42 1 -2.8912 -12.3846 -3.2579 43 1 -4.5837 -11.5893 -1.0572 44 1 -4.1653 -10.4651 -2.4219 45 1 -0.9153 -2.5644 3.6500 46 1 0.0992 -1.3355 1.6675 47 1 -0.6776 -2.6386 0.7341 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100123866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:37 Heat of formation + Delta-G solvation = -106.338018 kcal Electronic energy + Delta-G solvation = -28280.795236 eV Core-core repulsion = 24270.645001 eV Total energy + Delta-G solvation = -4010.150235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.61012 -40.98972 -39.46637 -38.33418 -36.85581 -35.84347 -35.42085 -33.76440 -31.61951 -30.59533 -29.52513 -27.34248 -26.67359 -26.42757 -24.06756 -23.49278 -22.31774 -21.80299 -20.44069 -20.28126 -19.14369 -18.77625 -18.08212 -17.56659 -17.42331 -17.00413 -16.79960 -16.45071 -16.26480 -15.80895 -15.63029 -15.45128 -15.39241 -15.00714 -14.46199 -14.40224 -13.97412 -13.80564 -13.61905 -13.51655 -13.38666 -13.24364 -12.93097 -12.87575 -12.69419 -12.65135 -12.18853 -12.15233 -11.99339 -11.83213 -11.42744 -11.30117 -11.28666 -11.09083 -10.91494 -10.79527 -10.59011 -10.29951 -10.06295 -8.70630 -7.90682 -5.36206 1.45882 1.46763 1.49867 1.56392 1.58048 1.76650 2.44069 2.49757 3.12738 3.26531 3.52799 3.58058 3.65752 3.67107 3.81605 3.93281 3.94310 4.13730 4.18642 4.25591 4.27286 4.36191 4.37325 4.45897 4.70939 4.71795 4.80933 4.87582 4.88305 4.94668 5.04922 5.08020 5.11094 5.16374 5.18109 5.22913 5.31430 5.47555 5.53966 5.59557 5.65529 6.34764 6.41578 6.46574 6.81896 7.06021 7.12186 7.15568 7.80143 8.31243 9.14929 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.002475 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.733125 B =11310.008550 C =11568.816215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.044 4.044 3 Si 0.963 3.037 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.603 5.603 10 C 0.145 3.855 11 C -0.130 4.130 12 C 0.169 3.831 13 H 0.080 0.920 14 N -0.698 5.698 15 C 0.516 3.484 16 O -0.569 6.569 17 C 0.102 3.898 18 N -0.710 5.710 19 C 0.520 3.480 20 O -0.583 6.583 21 C -0.136 4.136 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.125 4.125 25 C 0.084 3.916 26 H 0.064 0.936 27 O -0.573 6.573 28 C 0.156 3.844 29 H 0.251 0.749 30 H 0.018 0.982 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.407 0.593 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.417 0.583 38 H 0.138 0.862 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.392 0.608 46 H 0.063 0.937 47 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 -20.074 1.661 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.240 4.240 3 Si 0.792 3.208 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.327 5.327 10 C 0.019 3.981 11 C -0.170 4.170 12 C 0.064 3.936 13 H 0.098 0.902 14 N -0.349 5.349 15 C 0.302 3.698 16 O -0.450 6.450 17 C -0.025 4.025 18 N -0.364 5.364 19 C 0.308 3.692 20 O -0.462 6.462 21 C -0.157 4.157 22 C -0.161 4.161 23 C -0.167 4.167 24 C -0.163 4.163 25 C 0.023 3.977 26 H 0.081 0.919 27 O -0.380 6.380 28 C 0.029 3.971 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.244 0.756 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.256 0.744 38 H 0.156 0.844 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.241 0.759 46 H 0.082 0.918 47 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -3.115 -20.654 1.450 20.937 hybrid contribution 0.236 2.286 0.057 2.299 sum -2.879 -18.368 1.506 18.653 Atomic orbital electron populations 1.70139 1.06384 1.25958 1.54990 1.25726 0.96032 1.01228 1.01050 0.85349 0.78188 0.79871 0.77436 1.21508 1.21880 1.19631 1.19457 0.92908 0.85737 1.41293 0.91540 1.44167 1.35885 1.02323 1.50367 1.20988 0.97653 0.85604 0.93817 1.22306 0.96659 0.99894 0.98183 1.20814 0.85979 0.94057 0.92705 0.90161 1.45893 1.30410 1.06816 1.51757 1.20581 0.85944 0.82584 0.80678 1.90639 1.48600 1.53951 1.51764 1.21009 0.97415 0.82991 1.01113 1.45765 1.31636 1.05788 1.53215 1.21224 0.79698 0.91484 0.76801 1.90686 1.39011 1.69877 1.46667 1.22966 1.01526 0.88632 1.02612 1.22849 0.97966 0.98260 0.97035 1.22826 0.94464 0.97104 1.02342 1.22826 0.96349 0.98007 0.99078 1.22589 0.88259 0.95154 0.91738 0.91852 1.86383 1.47655 1.38201 1.65774 1.21215 0.88640 0.97893 0.89313 0.93984 0.96429 0.92604 0.90585 0.90563 0.75613 0.87898 0.88170 0.74411 0.84408 0.91030 0.88804 0.87817 0.90576 0.90014 0.91014 0.75898 0.91818 0.96994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.25 11.20 21.65 0.24 -51.00 16 2 C -0.04 -2.33 4.92 84.86 0.42 -1.91 16 3 Si 0.96 42.62 29.59 68.60 2.03 44.65 16 4 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.26 -13.56 9.58 84.04 0.81 -12.76 16 8 H 0.07 3.36 7.88 -2.91 -0.02 3.34 16 9 N -0.60 -27.59 2.99 -699.11 -2.09 -29.68 16 10 C 0.14 5.57 6.25 86.36 0.54 6.11 16 11 C -0.13 -4.22 5.80 30.78 0.18 -4.04 16 12 C 0.17 5.47 2.47 45.13 0.11 5.58 16 13 H 0.08 2.66 7.58 -2.39 -0.02 2.64 16 14 N -0.70 -21.10 4.15 -441.91 -1.84 -22.94 16 15 C 0.52 14.71 7.86 87.65 0.69 15.40 16 16 O -0.57 -18.32 15.33 -3.04 -0.05 -18.37 16 17 C 0.10 2.53 6.15 85.63 0.53 3.06 16 18 N -0.71 -16.05 5.53 -466.78 -2.58 -18.63 16 19 C 0.52 12.32 7.35 87.66 0.64 12.96 16 20 O -0.58 -18.46 15.90 -3.04 -0.05 -18.51 16 21 C -0.14 -2.14 4.15 -11.01 -0.05 -2.19 16 22 C -0.12 -1.62 7.63 31.12 0.24 -1.38 16 23 C -0.13 -1.40 8.08 31.12 0.25 -1.15 16 24 C -0.12 -1.94 7.41 31.12 0.23 -1.71 16 25 C 0.08 2.87 3.36 30.67 0.10 2.97 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 O -0.57 -17.86 13.21 -148.98 -1.97 -19.83 16 28 C 0.16 6.63 4.62 86.36 0.40 7.03 16 29 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 30 H 0.02 0.69 7.74 -2.39 -0.02 0.67 16 31 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.41 12.60 6.87 -92.71 -0.64 11.96 16 35 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.42 8.59 7.44 -92.71 -0.69 7.90 16 38 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.47 7.43 -2.38 -0.02 1.45 16 45 H 0.39 9.70 9.08 -74.05 -0.67 9.03 16 46 H 0.06 3.09 6.06 -2.39 -0.01 3.08 16 47 H 0.01 0.54 6.65 -2.38 -0.02 0.53 16 Total: -1.00 -66.01 377.35 -2.20 -68.21 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -0.99 Total: 38.12 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 5.09 Total: 27.99 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -6.27 Total: -122.25 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -2.06 Total: -56.71 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -66.01 -2.20 -68.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100123866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.132 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds