Wall clock time and date at job start Tue Mar 31 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99899 * 2 1 4 4 H 1.48504 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47631 * 300.00074 * 3 2 1 6 6 H 1.48498 * 109.47035 * 60.00241 * 3 2 1 7 7 C 1.38809 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99840 * 197.36882 * 7 2 1 9 9 N 1.36940 * 119.99914 * 17.36092 * 7 2 1 10 10 C 1.46925 * 120.63147 * 207.69221 * 9 7 2 11 11 C 1.53184 * 108.77823 * 233.59364 * 10 9 7 12 12 C 1.53047 * 109.31295 * 305.36485 * 11 10 9 13 13 H 1.09006 * 109.44608 * 301.35518 * 12 11 10 14 14 N 1.46494 * 109.46377 * 181.38760 * 12 11 10 15 15 C 1.34778 * 119.99976 * 84.92918 * 14 12 11 16 16 O 1.21278 * 120.00321 * 0.02562 * 15 14 12 17 17 C 1.50704 * 119.99636 * 180.02562 * 15 14 12 18 18 N 1.46503 * 109.46954 * 179.97438 * 17 15 14 19 19 C 1.34777 * 120.00174 * 179.72028 * 18 17 15 20 20 O 1.21283 * 119.99630 * 0.28118 * 19 18 17 21 21 C 1.50694 * 119.99942 * 180.27503 * 19 18 17 22 22 C 1.53785 * 113.61848 * 279.13868 * 21 19 18 23 23 C 1.53955 * 87.02248 * 220.04982 * 22 21 19 24 24 C 1.53788 * 87.11033 * 25.36439 * 23 22 21 25 25 C 1.53038 * 109.53628 * 61.36181 * 12 11 10 26 26 H 1.09004 * 109.49620 * 58.58838 * 25 12 11 27 27 O 1.42896 * 109.49725 * 178.68469 * 25 12 11 28 28 C 1.46923 * 120.63115 * 27.67753 * 9 7 2 29 29 H 0.97002 * 119.99926 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58759 * 353.38152 * 10 9 7 31 31 H 1.09000 * 109.58636 * 113.80299 * 10 9 7 32 32 H 1.09003 * 109.49973 * 185.41461 * 11 10 9 33 33 H 1.09005 * 109.50272 * 65.31610 * 11 10 9 34 34 H 0.96998 * 120.00241 * 264.93645 * 14 12 11 35 35 H 1.08998 * 109.47231 * 60.00096 * 17 15 14 36 36 H 1.08993 * 109.47097 * 299.99943 * 17 15 14 37 37 H 0.97006 * 119.99558 * 0.02562 * 18 17 15 38 38 H 1.09001 * 112.85073 * 50.34268 * 21 19 18 39 39 H 1.08996 * 113.61450 * 334.57295 * 22 21 19 40 40 H 1.09001 * 113.61104 * 105.47235 * 22 21 19 41 41 H 1.08999 * 113.53655 * 270.81315 * 23 22 21 42 42 H 1.08999 * 113.74349 * 139.94251 * 23 22 21 43 43 H 1.09003 * 113.61446 * 220.09396 * 24 23 22 44 44 H 1.08992 * 113.61713 * 89.18373 * 24 23 22 45 45 H 0.96702 * 114.00454 * 180.02562 * 27 25 12 46 46 H 1.09003 * 109.58656 * 6.62275 * 28 9 7 47 47 H 1.09002 * 109.70448 * 246.26940 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2787 9 7 1.3724 -2.3609 -0.3549 10 6 1.8192 -3.6548 0.1788 11 6 2.0743 -4.6095 -0.9917 12 6 0.8186 -4.6888 -1.8631 13 1 -0.0205 -5.0354 -1.2597 14 7 1.0476 -5.6265 -2.9651 15 6 0.8471 -6.9463 -2.7796 16 8 0.4767 -7.3576 -1.7005 17 6 1.0833 -7.9109 -3.9131 18 7 0.7982 -9.2749 -3.4609 19 6 0.9360 -10.3100 -4.3131 20 8 1.3008 -10.1127 -5.4528 21 6 0.6368 -11.7124 -3.8497 22 6 1.7869 -12.3587 -3.0594 23 6 1.4640 -13.6626 -3.8116 24 6 0.8781 -12.7820 -4.9280 25 6 0.5008 -3.3033 -2.4301 26 1 1.3495 -2.9453 -3.0130 27 8 -0.6539 -3.3843 -3.2680 28 6 0.2279 -2.3338 -1.2759 29 1 -0.4850 0.8401 0.0004 30 1 2.7399 -3.5178 0.7460 31 1 1.0467 -4.0692 0.8267 32 1 2.3134 -5.6009 -0.6071 33 1 2.9081 -4.2393 -1.5882 34 1 1.3436 -5.2975 -3.8282 35 1 2.1224 -7.8451 -4.2356 36 1 0.4276 -7.6595 -4.7466 37 1 0.5061 -9.4326 -2.5495 38 1 -0.3327 -11.7982 -3.3588 39 1 2.7671 -11.9472 -3.2999 40 1 1.6019 -12.4151 -1.9867 41 1 0.7213 -14.2824 -3.3092 42 1 2.3473 -14.2238 -4.1164 43 1 -0.0396 -13.1797 -5.3615 44 1 1.6094 -12.4865 -5.6802 45 1 -0.9134 -2.5406 -3.6629 46 1 0.0987 -1.3253 -1.6686 47 1 -0.6757 -2.6390 -0.7482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100123867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:40 Heat of formation + Delta-G solvation = -85.111389 kcal Electronic energy + Delta-G solvation = -27805.844634 eV Core-core repulsion = 23796.614855 eV Total energy + Delta-G solvation = -4009.229779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.64577 -39.81469 -38.14452 -37.54169 -35.33112 -34.74256 -34.33555 -32.28519 -30.00464 -29.03341 -28.49320 -26.30567 -25.93651 -24.88471 -22.56620 -21.91129 -21.13976 -20.47760 -19.81971 -19.47055 -18.14769 -17.12335 -16.76802 -16.51683 -16.31868 -15.98639 -15.71551 -15.52886 -14.94249 -14.54865 -14.47328 -13.92312 -13.76838 -13.50276 -13.31114 -13.14394 -12.87485 -12.81092 -12.66567 -12.31565 -12.25149 -12.00500 -11.73785 -11.54472 -11.28774 -10.90823 -10.89716 -10.83348 -10.76883 -10.48448 -10.24813 -10.10420 -10.02719 -9.97034 -9.61470 -9.41855 -9.37447 -8.88311 -8.59276 -6.83976 -5.91996 -3.35564 2.37474 2.59040 2.71665 3.28792 3.37842 3.39644 3.41091 4.13766 4.22986 4.36051 4.38191 4.44782 4.49080 4.66804 4.86527 5.11924 5.18074 5.22923 5.24620 5.32140 5.32828 5.38533 5.42349 5.52294 5.52429 5.60349 5.72698 5.84159 5.92536 6.01811 6.02768 6.10555 6.14309 6.35319 6.38157 6.63661 6.71660 6.84013 7.05791 7.28865 7.39256 7.54352 7.68320 7.99251 8.03238 8.19552 8.30940 9.06191 9.68957 10.24719 11.16471 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.034829 B = 0.002132 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.726107 B =13129.110127 C =13459.194379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.162 3.838 13 H 0.089 0.911 14 N -0.708 5.708 15 C 0.507 3.493 16 O -0.543 6.543 17 C 0.098 3.902 18 N -0.715 5.715 19 C 0.524 3.476 20 O -0.544 6.544 21 C -0.138 4.138 22 C -0.125 4.125 23 C -0.142 4.142 24 C -0.117 4.117 25 C 0.072 3.928 26 H 0.053 0.947 27 O -0.573 6.573 28 C 0.148 3.852 29 H 0.255 0.745 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.413 0.587 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.377 0.623 46 H 0.094 0.906 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 -20.347 -8.741 22.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.059 3.941 13 H 0.107 0.893 14 N -0.357 5.357 15 C 0.292 3.708 16 O -0.421 6.421 17 C -0.029 4.029 18 N -0.370 5.370 19 C 0.311 3.689 20 O -0.421 6.421 21 C -0.159 4.159 22 C -0.162 4.162 23 C -0.180 4.180 24 C -0.155 4.155 25 C 0.011 3.989 26 H 0.071 0.929 27 O -0.378 6.378 28 C 0.021 3.979 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.234 0.766 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.251 0.749 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.224 0.776 46 H 0.113 0.887 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.744 -20.947 -8.580 22.703 hybrid contribution 0.281 1.792 -0.107 1.817 sum 2.025 -19.155 -8.687 21.130 Atomic orbital electron populations 1.70039 1.05277 1.25644 1.53615 1.25088 0.95334 0.98608 1.00646 0.86203 0.79397 0.83698 0.77363 1.20166 1.21500 1.21609 1.19247 0.92884 0.84606 1.41757 0.91271 1.44022 1.35627 1.01797 1.49848 1.20940 0.98289 0.86323 0.92664 1.22421 0.96599 1.00270 0.98663 1.21046 0.98773 0.87035 0.87294 0.89294 1.46026 1.67809 1.05995 1.15920 1.20404 0.77548 0.83573 0.89232 1.90689 1.46937 1.77726 1.26731 1.21082 1.03526 0.82134 0.96185 1.45768 1.69400 1.05282 1.16552 1.20555 0.76777 0.86483 0.85113 1.90691 1.46754 1.85595 1.19064 1.22806 1.01538 0.90926 1.00675 1.22870 0.97673 0.96165 0.99534 1.22867 1.01403 0.96211 0.97490 1.22811 1.02078 0.94305 0.96317 1.22981 0.87154 0.95317 0.93486 0.92925 1.86403 1.48287 1.36733 1.66390 1.21417 0.89816 0.98297 0.88393 0.93496 0.92040 0.95818 0.91812 0.91919 0.76583 0.88554 0.88434 0.74932 0.86722 0.89625 0.90415 0.89831 0.90920 0.90959 0.88695 0.77609 0.88746 0.95216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 11.19 55.49 0.62 -24.48 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 20.80 29.59 -169.99 -5.03 15.77 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.26 -6.68 9.59 -15.06 -0.14 -6.83 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -14.02 2.99 -172.33 -0.52 -14.53 16 10 C 0.14 2.94 6.52 -3.71 -0.02 2.92 16 11 C -0.14 -2.38 5.65 -26.61 -0.15 -2.53 16 12 C 0.16 2.76 2.12 -67.89 -0.14 2.61 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 14 N -0.71 -9.69 4.92 -53.76 -0.26 -9.95 16 15 C 0.51 6.94 7.86 -10.98 -0.09 6.85 16 16 O -0.54 -9.11 15.33 5.56 0.09 -9.02 16 17 C 0.10 1.08 6.15 -5.19 -0.03 1.05 16 18 N -0.72 -7.72 5.53 -61.47 -0.34 -8.06 16 19 C 0.52 5.83 7.35 -10.99 -0.08 5.74 16 20 O -0.54 -7.79 15.91 5.56 0.09 -7.70 16 21 C -0.14 -1.10 4.14 -90.96 -0.38 -1.48 16 22 C -0.12 -0.85 7.64 -25.82 -0.20 -1.04 16 23 C -0.14 -0.84 8.09 -25.82 -0.21 -1.05 16 24 C -0.12 -0.89 7.40 -25.91 -0.19 -1.08 16 25 C 0.07 1.27 3.14 -26.61 -0.08 1.19 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 O -0.57 -9.34 13.16 -35.23 -0.46 -9.80 16 28 C 0.15 3.31 4.94 -3.71 -0.02 3.29 16 29 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.40 4.54 8.60 -40.82 -0.35 4.19 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.41 4.31 7.44 -40.82 -0.30 4.00 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.87 7.45 -51.93 -0.39 0.48 16 45 H 0.38 4.91 9.08 45.56 0.41 5.33 16 46 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -32.27 381.55 -8.68 -40.95 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -6.79 Total: 11.46 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -1.82 Total: 9.62 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.50 Total: -57.03 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.29 Total: -26.52 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.27 -8.68 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100123867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.162 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds