Wall clock time and date at job start Tue Mar 31 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99899 * 2 1 4 4 H 1.48504 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47631 * 300.00074 * 3 2 1 6 6 H 1.48498 * 109.47035 * 60.00241 * 3 2 1 7 7 C 1.38809 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99840 * 197.36882 * 7 2 1 9 9 N 1.36940 * 119.99914 * 17.36092 * 7 2 1 10 10 C 1.46925 * 120.63147 * 207.69221 * 9 7 2 11 11 C 1.53184 * 108.77823 * 233.59364 * 10 9 7 12 12 C 1.53047 * 109.31295 * 305.36485 * 11 10 9 13 13 H 1.09006 * 109.44608 * 301.35518 * 12 11 10 14 14 N 1.46494 * 109.46377 * 181.38760 * 12 11 10 15 15 C 1.34778 * 119.99976 * 84.92918 * 14 12 11 16 16 O 1.21278 * 120.00321 * 0.02562 * 15 14 12 17 17 C 1.50704 * 119.99636 * 180.02562 * 15 14 12 18 18 N 1.46503 * 109.46954 * 179.97438 * 17 15 14 19 19 C 1.34777 * 120.00174 * 179.72028 * 18 17 15 20 20 O 1.21283 * 119.99630 * 0.28118 * 19 18 17 21 21 C 1.50694 * 119.99942 * 180.27503 * 19 18 17 22 22 C 1.53785 * 113.61848 * 279.13868 * 21 19 18 23 23 C 1.53955 * 87.02248 * 220.04982 * 22 21 19 24 24 C 1.53788 * 87.11033 * 25.36439 * 23 22 21 25 25 C 1.53038 * 109.53628 * 61.36181 * 12 11 10 26 26 H 1.09004 * 109.49620 * 58.58838 * 25 12 11 27 27 O 1.42896 * 109.49725 * 178.68469 * 25 12 11 28 28 C 1.46923 * 120.63115 * 27.67753 * 9 7 2 29 29 H 0.97002 * 119.99926 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58759 * 353.38152 * 10 9 7 31 31 H 1.09000 * 109.58636 * 113.80299 * 10 9 7 32 32 H 1.09003 * 109.49973 * 185.41461 * 11 10 9 33 33 H 1.09005 * 109.50272 * 65.31610 * 11 10 9 34 34 H 0.96998 * 120.00241 * 264.93645 * 14 12 11 35 35 H 1.08998 * 109.47231 * 60.00096 * 17 15 14 36 36 H 1.08993 * 109.47097 * 299.99943 * 17 15 14 37 37 H 0.97006 * 119.99558 * 0.02562 * 18 17 15 38 38 H 1.09001 * 112.85073 * 50.34268 * 21 19 18 39 39 H 1.08996 * 113.61450 * 334.57295 * 22 21 19 40 40 H 1.09001 * 113.61104 * 105.47235 * 22 21 19 41 41 H 1.08999 * 113.53655 * 270.81315 * 23 22 21 42 42 H 1.08999 * 113.74349 * 139.94251 * 23 22 21 43 43 H 1.09003 * 113.61446 * 220.09396 * 24 23 22 44 44 H 1.08992 * 113.61713 * 89.18373 * 24 23 22 45 45 H 0.96702 * 114.00454 * 180.02562 * 27 25 12 46 46 H 1.09003 * 109.58656 * 6.62275 * 28 9 7 47 47 H 1.09002 * 109.70448 * 246.26940 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2787 9 7 1.3724 -2.3609 -0.3549 10 6 1.8192 -3.6548 0.1788 11 6 2.0743 -4.6095 -0.9917 12 6 0.8186 -4.6888 -1.8631 13 1 -0.0205 -5.0354 -1.2597 14 7 1.0476 -5.6265 -2.9651 15 6 0.8471 -6.9463 -2.7796 16 8 0.4767 -7.3576 -1.7005 17 6 1.0833 -7.9109 -3.9131 18 7 0.7982 -9.2749 -3.4609 19 6 0.9360 -10.3100 -4.3131 20 8 1.3008 -10.1127 -5.4528 21 6 0.6368 -11.7124 -3.8497 22 6 1.7869 -12.3587 -3.0594 23 6 1.4640 -13.6626 -3.8116 24 6 0.8781 -12.7820 -4.9280 25 6 0.5008 -3.3033 -2.4301 26 1 1.3495 -2.9453 -3.0130 27 8 -0.6539 -3.3843 -3.2680 28 6 0.2279 -2.3338 -1.2759 29 1 -0.4850 0.8401 0.0004 30 1 2.7399 -3.5178 0.7460 31 1 1.0467 -4.0692 0.8267 32 1 2.3134 -5.6009 -0.6071 33 1 2.9081 -4.2393 -1.5882 34 1 1.3436 -5.2975 -3.8282 35 1 2.1224 -7.8451 -4.2356 36 1 0.4276 -7.6595 -4.7466 37 1 0.5061 -9.4326 -2.5495 38 1 -0.3327 -11.7982 -3.3588 39 1 2.7671 -11.9472 -3.2999 40 1 1.6019 -12.4151 -1.9867 41 1 0.7213 -14.2824 -3.3092 42 1 2.3473 -14.2238 -4.1164 43 1 -0.0396 -13.1797 -5.3615 44 1 1.6094 -12.4865 -5.6802 45 1 -0.9134 -2.5406 -3.6629 46 1 0.0987 -1.3253 -1.6686 47 1 -0.6757 -2.6390 -0.7482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100123867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:40 Heat of formation + Delta-G solvation = -110.552984 kcal Electronic energy + Delta-G solvation = -27806.947864 eV Core-core repulsion = 23796.614855 eV Total energy + Delta-G solvation = -4010.333009 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56681 -40.90789 -39.50228 -38.33595 -36.89792 -35.98176 -35.44501 -34.00570 -31.55290 -30.59178 -29.59170 -27.34335 -26.56772 -26.30822 -24.14938 -23.47959 -21.96315 -21.62430 -21.16229 -20.36293 -19.17671 -18.70686 -18.12710 -17.76380 -17.37407 -16.95124 -16.92180 -16.51267 -16.30411 -15.70529 -15.56283 -15.48619 -15.23048 -15.04894 -14.46277 -14.34432 -13.98378 -13.81615 -13.71467 -13.41522 -13.38625 -13.36074 -13.07295 -12.92675 -12.69836 -12.53707 -12.15418 -12.10395 -12.00180 -11.89012 -11.44792 -11.42788 -11.29470 -11.09559 -10.92333 -10.78668 -10.62204 -10.29325 -10.08654 -8.77708 -7.92073 -5.38851 1.45588 1.46580 1.49797 1.56235 1.59776 1.74228 2.41630 2.48673 3.09841 3.25290 3.52613 3.57857 3.62264 3.66952 3.81649 3.91067 3.93245 4.04721 4.18825 4.28907 4.30652 4.37347 4.40939 4.44978 4.68940 4.71418 4.80755 4.86695 4.87969 4.92189 5.04160 5.05033 5.10919 5.15085 5.18294 5.23364 5.32756 5.40292 5.53492 5.56082 5.63441 6.32271 6.42778 6.45826 6.80835 7.09017 7.10387 7.14401 7.76792 8.29078 9.14695 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.034829 B = 0.002132 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.726107 B =13129.110127 C =13459.194379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.296 1.296 7 C -0.263 4.263 8 H 0.073 0.927 9 N -0.605 5.605 10 C 0.141 3.859 11 C -0.123 4.123 12 C 0.171 3.829 13 H 0.059 0.941 14 N -0.699 5.699 15 C 0.511 3.489 16 O -0.574 6.574 17 C 0.106 3.894 18 N -0.714 5.714 19 C 0.522 3.478 20 O -0.580 6.580 21 C -0.139 4.139 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.123 4.123 25 C 0.091 3.909 26 H 0.067 0.933 27 O -0.574 6.574 28 C 0.156 3.844 29 H 0.251 0.749 30 H 0.067 0.933 31 H 0.010 0.990 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.415 0.585 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.416 0.584 38 H 0.134 0.866 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.392 0.608 46 H 0.070 0.930 47 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 -21.658 -9.632 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.393 4.393 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.163 4.163 12 C 0.066 3.934 13 H 0.078 0.922 14 N -0.349 5.349 15 C 0.298 3.702 16 O -0.454 6.454 17 C -0.022 4.022 18 N -0.368 5.368 19 C 0.311 3.689 20 O -0.460 6.460 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.169 4.169 24 C -0.161 4.161 25 C 0.030 3.970 26 H 0.085 0.915 27 O -0.380 6.380 28 C 0.029 3.971 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.028 0.972 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.252 0.748 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.254 0.746 38 H 0.152 0.848 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.242 0.758 46 H 0.088 0.912 47 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 2.843 -22.274 -9.494 24.380 hybrid contribution -0.104 2.170 0.208 2.183 sum 2.738 -20.104 -9.286 22.314 Atomic orbital electron populations 1.70192 1.06693 1.26006 1.55186 1.25829 0.96032 1.01610 1.01008 0.85192 0.78714 0.79678 0.76738 1.18927 1.21422 1.22313 1.19578 0.93200 0.85587 1.40924 0.90927 1.44271 1.35648 1.02424 1.50602 1.21052 0.97892 0.85616 0.93970 1.22210 0.96893 0.99758 0.97418 1.20680 0.97700 0.87141 0.87893 0.92237 1.45780 1.67762 1.05650 1.15713 1.20799 0.76458 0.83577 0.89391 1.90683 1.48238 1.78204 1.28255 1.21060 1.04648 0.81534 0.94933 1.45825 1.69086 1.05224 1.16679 1.21110 0.75803 0.87499 0.84513 1.90674 1.48510 1.86208 1.20561 1.22963 1.02944 0.88842 1.01268 1.22881 0.96615 0.96344 1.00280 1.22857 1.01870 0.95822 0.96334 1.22816 1.02100 0.94799 0.96366 1.22563 0.88005 0.94553 0.91879 0.91506 1.86384 1.47783 1.38021 1.65844 1.21223 0.88346 0.98158 0.89384 0.93938 0.91490 0.97203 0.90742 0.90671 0.74810 0.87043 0.87501 0.74611 0.84790 0.90693 0.89087 0.88133 0.90453 0.90161 0.90708 0.75828 0.91175 0.98673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.30 11.19 21.65 0.24 -53.06 16 2 C -0.05 -2.63 4.91 84.86 0.42 -2.22 16 3 Si 0.97 42.90 29.59 68.60 2.03 44.93 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.26 -13.76 9.59 84.03 0.81 -12.96 16 8 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 9 N -0.60 -29.04 2.99 -699.12 -2.09 -31.13 16 10 C 0.14 5.71 6.52 86.36 0.56 6.27 16 11 C -0.12 -4.02 5.65 30.67 0.17 -3.85 16 12 C 0.17 5.65 2.12 45.02 0.10 5.74 16 13 H 0.06 2.36 7.58 -2.38 -0.02 2.34 16 14 N -0.70 -17.71 4.92 -442.40 -2.18 -19.89 16 15 C 0.51 13.10 7.86 87.66 0.69 13.79 16 16 O -0.57 -18.65 15.33 -3.02 -0.05 -18.69 16 17 C 0.11 2.11 6.15 85.63 0.53 2.63 16 18 N -0.71 -14.31 5.53 -466.79 -2.58 -16.89 16 19 C 0.52 10.98 7.35 87.65 0.64 11.62 16 20 O -0.58 -16.19 15.91 -3.04 -0.05 -16.24 16 21 C -0.14 -1.99 4.14 -11.01 -0.05 -2.03 16 22 C -0.12 -1.44 7.64 31.18 0.24 -1.20 16 23 C -0.13 -1.27 8.09 31.18 0.25 -1.01 16 24 C -0.12 -1.70 7.40 31.13 0.23 -1.47 16 25 C 0.09 3.16 3.14 30.67 0.10 3.26 16 26 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 27 O -0.57 -17.99 13.16 -148.98 -1.96 -19.95 16 28 C 0.16 7.13 4.94 86.36 0.43 7.56 16 29 H 0.25 13.87 8.31 -92.71 -0.77 13.09 16 30 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.07 2.31 8.14 -2.38 -0.02 2.30 16 34 H 0.42 8.24 8.60 -92.71 -0.80 7.44 16 35 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.42 8.06 7.44 -92.70 -0.69 7.37 16 38 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.35 7.45 -2.39 -0.02 1.33 16 45 H 0.39 9.75 9.08 -74.06 -0.67 9.07 16 46 H 0.07 3.54 6.04 -2.39 -0.01 3.53 16 47 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: -1.00 -70.36 381.55 -2.68 -73.04 By element: Atomic # 1 Polarization: 32.91 SS G_CDS: -1.15 Total: 31.75 kcal Atomic # 6 Polarization: 21.02 SS G_CDS: 5.11 Total: 26.13 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -6.61 Total: -120.96 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -2.06 Total: -54.88 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -70.36 -2.68 -73.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100123867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.516 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds