Wall clock time and date at job start Tue Mar 31 2020 05:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99563 * 2 1 4 4 H 1.48503 * 109.46887 * 269.99352 * 3 2 1 5 5 H 1.48495 * 109.47466 * 29.99936 * 3 2 1 6 6 H 1.48506 * 109.46689 * 149.99787 * 3 2 1 7 7 C 1.38810 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99991 * 197.36901 * 7 2 1 9 9 N 1.36938 * 119.99715 * 17.36784 * 7 2 1 10 10 C 1.46921 * 120.63224 * 27.66541 * 9 7 2 11 11 C 1.53192 * 108.77558 * 126.41169 * 10 9 7 12 12 C 1.53038 * 109.31439 * 54.63672 * 11 10 9 13 13 H 1.09000 * 109.46069 * 58.65529 * 12 11 10 14 14 N 1.46501 * 109.46106 * 178.61434 * 12 11 10 15 15 C 1.34771 * 120.00016 * 275.06574 * 14 12 11 16 16 O 1.21285 * 119.99983 * 359.97438 * 15 14 12 17 17 C 1.50701 * 120.00050 * 179.97438 * 15 14 12 18 18 N 1.46502 * 109.47008 * 179.97438 * 17 15 14 19 19 C 1.34783 * 119.99744 * 180.02562 * 18 17 15 20 20 O 1.21279 * 119.99908 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99691 * 180.02562 * 19 18 17 22 22 C 1.53782 * 113.61226 * 277.49441 * 21 19 18 23 23 C 1.53782 * 87.07903 * 220.01914 * 22 21 19 24 24 C 1.53782 * 87.08174 * 25.43890 * 23 22 21 25 25 C 1.53047 * 109.53706 * 298.63536 * 12 11 10 26 26 H 1.08998 * 109.51889 * 301.39530 * 25 12 11 27 27 O 1.42897 * 109.49634 * 181.31435 * 25 12 11 28 28 C 1.46930 * 120.62962 * 207.68443 * 9 7 2 29 29 H 0.96998 * 120.00601 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.58942 * 246.20058 * 10 9 7 31 31 H 1.08997 * 109.58658 * 6.62254 * 10 9 7 32 32 H 1.09002 * 109.49998 * 174.58664 * 11 10 9 33 33 H 1.08997 * 109.49754 * 294.64830 * 11 10 9 34 34 H 0.97002 * 119.99709 * 95.07367 * 14 12 11 35 35 H 1.08990 * 109.47190 * 300.00096 * 17 15 14 36 36 H 1.08996 * 109.46800 * 60.00481 * 17 15 14 37 37 H 0.96997 * 120.00063 * 359.97438 * 18 17 15 38 38 H 1.08993 * 112.85036 * 48.80080 * 21 19 18 39 39 H 1.08997 * 113.61489 * 334.57238 * 22 21 19 40 40 H 1.09004 * 113.61121 * 105.47159 * 22 21 19 41 41 H 1.08994 * 113.61733 * 270.88531 * 23 22 21 42 42 H 1.09007 * 113.68858 * 139.99284 * 23 22 21 43 43 H 1.09006 * 113.61255 * 220.02008 * 24 23 22 44 44 H 1.09000 * 113.69468 * 89.12175 * 24 23 22 45 45 H 0.96696 * 113.99526 * 180.15807 * 27 25 12 46 46 H 1.09000 * 109.58480 * 113.80115 * 28 9 7 47 47 H 1.08997 * 109.58456 * 353.38087 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2232 0.2798 9 7 1.3724 -2.3611 -0.3530 10 6 0.2279 -2.3349 -1.2738 11 6 0.5008 -3.3053 -2.4273 12 6 0.8187 -4.6903 -1.8592 13 1 -0.0204 -5.0366 -1.2558 14 7 1.0477 -5.6288 -2.9605 15 6 0.0039 -6.2490 -3.5455 16 8 -1.1250 -6.0305 -3.1598 17 6 0.2395 -7.2140 -4.6788 18 7 -1.0441 -7.7505 -5.1381 19 6 -1.0793 -8.6393 -6.1507 20 8 -0.0485 -8.9953 -6.6813 21 6 -2.3997 -9.1907 -6.6236 22 6 -2.9172 -10.3636 -5.7741 23 6 -3.3667 -11.0168 -7.0918 24 6 -2.2692 -10.1915 -7.7840 25 6 2.0744 -4.6102 -0.9880 26 1 2.9085 -4.2408 -1.5844 27 8 2.3880 -5.9096 -0.4827 28 6 1.8194 -3.6546 0.1818 29 1 -0.4851 0.8400 -0.0004 30 1 -0.6743 -2.6411 -0.7443 31 1 0.0986 -1.3267 -1.6673 32 1 -0.3800 -3.3677 -3.0664 33 1 1.3490 -2.9474 -3.0109 34 1 1.9507 -5.8039 -3.2686 35 1 0.7321 -6.6954 -5.5011 36 1 0.8721 -8.0319 -4.3339 37 1 -1.8684 -7.4666 -4.7130 38 1 -3.1445 -8.4143 -6.7982 39 1 -2.1277 -10.9130 -5.2614 40 1 -3.7434 -10.0948 -5.1159 41 1 -4.3769 -10.7405 -7.3937 42 1 -3.1931 -12.0923 -7.1289 43 1 -2.5724 -9.7837 -8.7484 44 1 -1.3021 -10.6928 -7.8215 45 1 3.1732 -5.9333 0.0811 46 1 1.0470 -4.0685 0.8300 47 1 2.7401 -3.5171 0.7488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100123869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:43 Heat of formation + Delta-G solvation = -110.396085 kcal Electronic energy + Delta-G solvation = -27797.314564 eV Core-core repulsion = 23786.988358 eV Total energy + Delta-G solvation = -4010.326206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.57337 -40.91725 -39.51497 -38.34818 -36.98158 -35.93593 -35.44444 -33.82977 -31.93805 -30.44169 -29.52161 -27.34535 -26.57371 -26.30943 -24.08154 -23.58155 -21.96575 -21.64341 -21.18793 -20.36259 -19.15211 -18.75566 -18.05492 -17.72318 -17.40908 -17.00765 -16.83738 -16.58189 -16.29382 -15.76003 -15.64785 -15.48430 -15.22860 -14.95247 -14.53388 -14.35326 -13.99006 -13.86639 -13.71769 -13.47369 -13.38942 -13.28034 -12.98228 -12.93013 -12.74013 -12.39720 -12.16119 -12.12761 -12.05550 -11.89906 -11.44085 -11.43065 -11.29794 -11.13465 -10.98571 -10.79703 -10.58279 -10.29255 -10.07403 -8.77874 -7.91246 -5.38464 1.45515 1.48098 1.49604 1.55502 1.58224 1.73985 2.41041 2.48443 3.11036 3.25574 3.52322 3.57681 3.62177 3.66378 3.81128 3.87234 3.92721 4.04815 4.18039 4.20970 4.29685 4.36297 4.38652 4.52136 4.67358 4.70773 4.79979 4.83570 4.87377 4.92204 5.00966 5.04299 5.10307 5.11541 5.17826 5.22920 5.36619 5.41468 5.53002 5.59816 5.65579 6.33048 6.42307 6.45204 6.87474 7.08940 7.11267 7.13681 7.77354 8.29386 9.15904 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.002209 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.352979 B =12674.564149 C =13124.634627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.264 4.264 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.129 4.129 12 C 0.171 3.829 13 H 0.059 0.941 14 N -0.698 5.698 15 C 0.509 3.491 16 O -0.576 6.576 17 C 0.106 3.894 18 N -0.715 5.715 19 C 0.523 3.477 20 O -0.579 6.579 21 C -0.140 4.140 22 C -0.124 4.124 23 C -0.131 4.131 24 C -0.122 4.122 25 C 0.101 3.899 26 H 0.075 0.925 27 O -0.571 6.571 28 C 0.117 3.883 29 H 0.251 0.749 30 H -0.008 1.008 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.416 0.584 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.415 0.585 38 H 0.134 0.866 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.396 0.604 46 H 0.012 0.988 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.836 -19.398 -12.335 23.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.394 4.394 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.052 3.948 11 C -0.169 4.169 12 C 0.066 3.934 13 H 0.077 0.923 14 N -0.348 5.348 15 C 0.296 3.704 16 O -0.456 6.456 17 C -0.021 4.021 18 N -0.369 5.369 19 C 0.311 3.689 20 O -0.459 6.459 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.168 4.168 24 C -0.160 4.160 25 C 0.040 3.960 26 H 0.092 0.908 27 O -0.378 6.378 28 C -0.010 4.010 29 H 0.060 0.940 30 H 0.010 0.990 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.253 0.747 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.253 0.747 38 H 0.152 0.848 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.247 0.753 46 H 0.030 0.970 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.489 -19.525 -12.724 23.353 hybrid contribution 0.648 1.595 0.839 1.915 sum -0.840 -17.930 -11.885 21.528 Atomic orbital electron populations 1.70197 1.06864 1.26049 1.55044 1.25871 0.96007 1.01805 1.01014 0.85227 0.78127 0.79250 0.77583 1.21119 1.22579 1.18920 1.19561 0.93224 0.85520 1.41072 0.90562 1.44262 1.35666 1.02105 1.50795 1.20565 0.87819 0.97778 0.88627 1.22322 1.01333 0.94360 0.98899 1.20660 0.97321 0.88547 0.86868 0.92266 1.45752 1.10218 1.43714 1.35148 1.20846 0.84816 0.81041 0.83716 1.90698 1.24043 1.65501 1.65311 1.21063 0.88118 0.97217 0.95694 1.45844 1.09911 1.44790 1.36362 1.21099 0.92103 0.77382 0.78302 1.90668 1.36671 1.60683 1.57853 1.22966 0.93989 0.98861 1.00269 1.22849 1.01139 0.94805 0.97361 1.22824 0.99186 1.00062 0.94777 1.22818 0.99972 0.96276 0.96963 1.22314 0.95807 0.83234 0.94629 0.90755 1.86444 1.52398 1.28369 1.70584 1.21699 0.98675 0.86260 0.94331 0.94028 0.98962 0.91922 0.92168 0.91177 0.74672 0.87120 0.87229 0.74672 0.84849 0.90705 0.89207 0.88134 0.90409 0.90136 0.90627 0.75344 0.96999 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.73 11.19 21.65 0.24 -54.48 16 2 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 3 Si 0.97 43.43 29.59 68.60 2.03 45.46 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.26 -13.78 9.59 84.03 0.81 -12.98 16 8 H 0.08 3.78 7.89 -2.91 -0.02 3.76 16 9 N -0.60 -28.97 2.99 -699.11 -2.09 -31.06 16 10 C 0.18 8.59 5.31 86.36 0.46 9.05 16 11 C -0.13 -4.84 5.65 30.67 0.17 -4.67 16 12 C 0.17 5.67 2.12 45.02 0.10 5.77 16 13 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 14 N -0.70 -17.75 4.92 -442.40 -2.18 -19.92 16 15 C 0.51 13.51 7.86 87.66 0.69 14.20 16 16 O -0.58 -19.70 15.33 -3.05 -0.05 -19.75 16 17 C 0.11 2.17 6.15 85.63 0.53 2.70 16 18 N -0.71 -14.91 5.53 -466.79 -2.58 -17.49 16 19 C 0.52 11.28 7.35 87.66 0.64 11.93 16 20 O -0.58 -16.33 15.90 -3.03 -0.05 -16.38 16 21 C -0.14 -2.09 4.15 -11.01 -0.05 -2.13 16 22 C -0.12 -1.54 7.63 31.12 0.24 -1.31 16 23 C -0.13 -1.33 8.08 31.12 0.25 -1.08 16 24 C -0.12 -1.75 7.41 31.12 0.23 -1.52 16 25 C 0.10 3.07 3.14 30.67 0.10 3.16 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 O -0.57 -14.45 13.16 -148.98 -1.96 -16.41 16 28 C 0.12 4.50 6.14 86.36 0.53 5.03 16 29 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 30 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 31 H 0.06 3.40 6.04 -2.39 -0.01 3.38 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.42 7.95 8.60 -92.71 -0.80 7.15 16 35 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.42 8.53 7.44 -92.71 -0.69 7.84 16 38 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.08 1.39 7.43 -2.39 -0.02 1.37 16 45 H 0.40 6.51 9.08 -74.06 -0.67 5.84 16 46 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 Total: -1.00 -72.41 381.51 -2.68 -75.08 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -1.15 Total: 29.18 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 5.11 Total: 25.78 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -6.61 Total: -122.96 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -2.06 Total: -52.54 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -72.41 -2.68 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100123869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.313 kcal (2) G-P(sol) polarization free energy of solvation -72.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds