Wall clock time and date at job start Tue Mar 31 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99900 * 2 1 4 4 H 1.48509 * 109.46841 * 269.99694 * 3 2 1 5 5 H 1.48504 * 109.47165 * 29.99482 * 3 2 1 6 6 H 1.48496 * 109.47045 * 149.99935 * 3 2 1 7 7 C 1.38807 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.47029 * 125.64487 * 0.02562 * 9 7 2 11 11 C 1.54327 * 107.26790 * 178.89898 * 10 9 7 12 12 H 1.09001 * 110.71543 * 96.16961 * 11 10 9 13 13 O 1.42898 * 110.71639 * 219.44351 * 11 10 9 14 14 C 1.55154 * 102.94290 * 337.80696 * 11 10 9 15 15 H 1.09002 * 111.00378 * 277.42832 * 14 11 10 16 16 N 1.46500 * 111.00420 * 153.61252 * 14 11 10 17 17 C 1.34773 * 120.00200 * 158.17403 * 16 14 11 18 18 O 1.21280 * 119.99742 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00375 * 180.02562 * 17 16 14 20 20 C 1.53000 * 109.47226 * 180.02562 * 19 17 16 21 21 N 1.46495 * 109.46808 * 180.02562 * 20 19 17 22 22 C 1.34781 * 120.00021 * 179.97438 * 21 20 19 23 23 O 1.21280 * 119.99678 * 0.02562 * 22 21 20 24 24 C 1.50695 * 120.00203 * 180.02562 * 22 21 20 25 25 C 1.53783 * 113.61452 * 277.49663 * 24 22 21 26 26 C 1.53780 * 87.08006 * 220.02073 * 25 24 22 27 27 C 1.53776 * 87.08441 * 25.43358 * 26 25 24 28 28 C 1.47418 * 125.65017 * 179.97438 * 9 7 2 29 29 H 0.96998 * 120.00328 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.88066 * 59.47881 * 10 9 7 31 31 H 1.09003 * 109.87770 * 298.31540 * 10 9 7 32 32 H 0.96701 * 114.00092 * 293.52074 * 13 11 10 33 33 H 0.97001 * 120.00052 * 338.18451 * 16 14 11 34 34 H 1.09001 * 109.47222 * 300.00926 * 19 17 16 35 35 H 1.08997 * 109.46546 * 60.00773 * 19 17 16 36 36 H 1.09001 * 109.47469 * 300.00399 * 20 19 17 37 37 H 1.09005 * 109.46778 * 60.00512 * 20 19 17 38 38 H 0.97001 * 120.00295 * 0.02562 * 21 20 19 39 39 H 1.08999 * 112.85152 * 48.80742 * 24 22 21 40 40 H 1.08996 * 113.61539 * 334.56933 * 25 24 22 41 41 H 1.09000 * 113.61003 * 105.47140 * 25 24 22 42 42 H 1.08999 * 113.61445 * 270.87943 * 26 25 24 43 43 H 1.09007 * 113.68972 * 140.00088 * 26 25 24 44 44 H 1.08994 * 113.61453 * 220.01699 * 27 26 25 45 45 H 1.09000 * 113.68704 * 89.12529 * 27 26 25 46 46 H 1.08995 * 110.37279 * 85.33444 * 28 9 7 47 47 H 1.08997 * 110.36990 * 323.00642 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4484 -4.0442 -0.0284 12 1 -0.6323 -4.4186 0.9786 13 8 -1.5622 -4.3155 -0.8815 14 6 0.8524 -4.6558 -0.6126 15 1 0.8581 -4.5953 -1.7009 16 7 1.0289 -6.0396 -0.1654 17 6 1.8117 -6.8808 -0.8696 18 8 2.3704 -6.4919 -1.8734 19 6 1.9928 -8.3045 -0.4100 20 6 2.9221 -9.0388 -1.3786 21 7 3.0976 -10.4230 -0.9320 22 6 3.8804 -11.2642 -1.6363 23 8 4.4398 -10.8751 -2.6396 24 6 4.0605 -12.6882 -1.1773 25 6 5.1269 -12.8520 -0.0814 26 6 5.5603 -14.1377 -0.8052 27 6 4.9820 -13.5171 -2.0878 28 6 1.9335 -3.7311 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5569 -2.0516 -0.8840 31 1 -0.5549 -2.0850 0.9014 32 1 -2.4001 -3.9544 -0.5612 33 1 0.5822 -6.3506 0.6375 34 1 2.4304 -8.3111 0.5883 35 1 1.0245 -8.8043 -0.3856 36 1 2.4849 -9.0322 -2.3770 37 1 3.8904 -8.5388 -1.4025 38 1 2.6499 -10.7343 -0.1298 39 1 3.1162 -13.1813 -0.9467 40 1 5.8854 -12.0693 -0.0898 41 1 4.7102 -13.0284 0.9102 42 1 5.0266 -15.0277 -0.4716 43 1 6.6407 -14.2793 -0.8372 44 1 4.4484 -14.2304 -2.7159 45 1 5.7000 -12.9161 -2.6458 46 1 2.1657 -4.0425 1.0189 47 1 2.8334 -3.7402 -0.6143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196836310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:29 Heat of formation + Delta-G solvation = -79.222472 kcal Electronic energy + Delta-G solvation = -27111.615437 eV Core-core repulsion = 23102.641021 eV Total energy + Delta-G solvation = -4008.974416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.57201 -39.78387 -38.06908 -37.69506 -35.34894 -35.08185 -34.08421 -31.91387 -31.13094 -28.47215 -27.44415 -26.80447 -26.03889 -24.64568 -23.52986 -21.28060 -20.78644 -20.46803 -20.13077 -19.65393 -17.84582 -17.32893 -17.08262 -16.63846 -16.21246 -15.91319 -15.73868 -15.61264 -14.88820 -14.64366 -14.49226 -14.09274 -13.79961 -13.58522 -13.19880 -13.09009 -12.86868 -12.70506 -12.53688 -12.39415 -12.12356 -12.08419 -11.74281 -11.57517 -11.47351 -11.27606 -10.97070 -10.90774 -10.83084 -10.82772 -10.18514 -10.02208 -9.94252 -9.86381 -9.79730 -9.34711 -9.32165 -8.87452 -8.65214 -6.93528 -5.78048 -3.12639 2.38353 2.71677 2.74816 3.37854 3.40407 3.44186 3.45931 4.07808 4.15904 4.29600 4.38347 4.42028 4.48026 4.59221 4.79330 4.82112 4.83562 5.11041 5.14310 5.21169 5.24038 5.35875 5.41656 5.44933 5.54387 5.55611 5.63117 5.66177 5.68452 5.78975 5.83652 5.98898 6.04902 6.10101 6.16275 6.48075 6.59413 6.84450 7.21188 7.29643 7.44365 7.61781 7.71945 7.98932 8.07888 8.15462 8.34004 9.13377 9.73421 10.36118 11.33761 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.024982 B = 0.001941 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.549525 B =14423.382570 C =15089.082327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.916 3.084 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.153 3.847 11 C 0.068 3.932 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.138 3.862 15 H 0.104 0.896 16 N -0.714 5.714 17 C 0.515 3.485 18 O -0.533 6.533 19 C -0.152 4.152 20 C 0.132 3.868 21 N -0.732 5.732 22 C 0.520 3.480 23 O -0.534 6.534 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.143 4.143 27 C -0.119 4.119 28 C 0.130 3.870 29 H 0.253 0.747 30 H 0.061 0.939 31 H 0.049 0.951 32 H 0.377 0.623 33 H 0.397 0.603 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.399 0.601 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.023 0.977 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 -27.293 5.036 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.032 3.968 15 H 0.122 0.878 16 N -0.365 5.365 17 C 0.300 3.700 18 O -0.410 6.410 19 C -0.193 4.193 20 C 0.009 3.991 21 N -0.384 5.384 22 C 0.306 3.694 23 O -0.410 6.410 24 C -0.161 4.161 25 C -0.162 4.162 26 C -0.180 4.180 27 C -0.157 4.157 28 C 0.003 3.997 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.223 0.777 33 H 0.231 0.769 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.233 0.767 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.041 0.959 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.974 -26.766 3.210 27.121 hybrid contribution -0.673 1.004 1.287 1.766 sum 2.301 -25.762 4.497 26.252 Atomic orbital electron populations 1.69918 1.04934 1.25232 1.57092 1.24820 0.95797 0.97811 1.01973 0.86060 0.78550 0.83113 0.77687 1.21458 1.21633 1.20614 1.19092 0.90570 0.82061 1.43943 0.90125 1.44247 1.01197 0.99902 1.87428 1.21829 0.85432 0.87787 1.02183 1.23455 0.85546 0.98614 0.91553 0.92480 1.86468 1.18800 1.80030 1.51528 1.22274 0.94489 0.78991 1.01002 0.87803 1.45909 1.49528 1.11905 1.29149 1.20235 0.78988 0.86942 0.83806 1.90770 1.47096 1.77814 1.25280 1.21797 1.02172 0.93943 1.01347 1.21057 1.00238 0.80080 0.97753 1.46031 1.50394 1.12081 1.29848 1.20536 0.78151 0.87424 0.83313 1.90730 1.47224 1.77778 1.25304 1.22821 1.00344 0.92881 1.00040 1.22830 0.97537 0.98737 0.97056 1.22834 1.01522 0.97035 0.96622 1.22814 0.98475 0.98141 0.96244 1.21842 0.94929 0.85728 0.97221 0.93642 0.92077 0.93304 0.77651 0.76905 0.88232 0.88309 0.90432 0.90384 0.76711 0.86949 0.89570 0.90618 0.89875 0.90907 0.90994 0.88607 0.95912 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.71 10.31 55.49 0.57 -26.14 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.29 3.39 -170.08 -0.58 -15.87 16 10 C 0.15 3.59 5.15 -3.06 -0.02 3.58 16 11 C 0.07 1.22 3.96 -24.90 -0.10 1.13 16 12 H 0.06 0.88 8.00 -51.93 -0.42 0.46 16 13 O -0.56 -9.48 13.39 -35.23 -0.47 -9.96 16 14 C 0.14 2.54 3.09 -65.78 -0.20 2.33 16 15 H 0.10 2.24 7.63 -51.93 -0.40 1.85 16 16 N -0.71 -9.77 5.22 -51.73 -0.27 -10.04 16 17 C 0.52 7.19 7.83 -10.99 -0.09 7.11 16 18 O -0.53 -10.09 15.67 5.56 0.09 -10.00 16 19 C -0.15 -1.29 5.81 -27.88 -0.16 -1.45 16 20 C 0.13 1.43 4.96 -4.04 -0.02 1.40 16 21 N -0.73 -5.92 5.56 -60.30 -0.33 -6.25 16 22 C 0.52 5.32 7.35 -10.99 -0.08 5.24 16 23 O -0.53 -8.07 15.90 5.56 0.09 -7.98 16 24 C -0.14 -0.92 4.15 -90.96 -0.38 -1.30 16 25 C -0.12 -0.67 7.63 -25.92 -0.20 -0.87 16 26 C -0.14 -0.73 8.08 -25.92 -0.21 -0.94 16 27 C -0.12 -0.84 7.41 -25.92 -0.19 -1.03 16 28 C 0.13 2.76 6.93 -2.53 -0.02 2.74 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.06 1.63 7.29 -51.93 -0.38 1.25 16 31 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 32 H 0.38 4.76 9.12 45.56 0.42 5.17 16 33 H 0.40 4.03 8.54 -40.82 -0.35 3.68 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.40 1.79 8.47 -40.82 -0.35 1.44 16 39 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.88 7.43 -51.93 -0.39 0.49 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -36.80 386.14 -8.88 -45.68 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.86 Total: 6.56 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -1.91 Total: 11.07 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.61 Total: -58.30 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.30 Total: -27.94 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.80 -8.88 -45.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196836310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.541 kcal (2) G-P(sol) polarization free energy of solvation -36.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds