Wall clock time and date at job start Tue Mar 31 2020 05:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47056 * 119.99730 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99759 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.07992 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99958 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99768 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.46893 * 111.00154 * 180.02562 * 13 12 10 15 15 H 1.09003 * 112.85021 * 23.80074 * 14 13 12 16 16 C 1.53782 * 113.61431 * 154.99857 * 14 13 12 17 17 C 1.53781 * 87.08206 * 139.98324 * 16 14 13 18 18 H 1.09003 * 113.61714 * 89.11186 * 17 16 14 19 19 N 1.46497 * 113.61345 * 220.02247 * 17 16 14 20 20 C 1.34783 * 119.99737 * 204.99547 * 19 17 16 21 21 O 1.21274 * 119.99998 * 0.02562 * 20 19 17 22 22 C 1.50698 * 119.99876 * 179.97438 * 20 19 17 23 23 H 1.09001 * 109.48178 * 305.02466 * 22 20 19 24 24 C 1.53092 * 109.47937 * 65.05836 * 22 20 19 25 25 C 1.53183 * 109.16342 * 177.58913 * 24 22 20 26 26 C 1.53170 * 109.03756 * 303.02373 * 25 24 22 27 27 C 1.53090 * 109.16553 * 56.97779 * 26 25 24 28 28 O 1.42898 * 109.48218 * 184.99982 * 22 20 19 29 29 C 1.53780 * 113.61543 * 252.49750 * 14 13 12 30 30 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 31 31 H 0.97000 * 119.99715 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47211 * 299.99931 * 12 10 9 33 33 H 1.08997 * 109.47040 * 59.99806 * 12 10 9 34 34 H 1.00903 * 110.99451 * 303.95710 * 13 12 10 35 35 H 1.09002 * 113.61248 * 254.52562 * 16 14 13 36 36 H 1.08994 * 113.61425 * 25.34461 * 16 14 13 37 37 H 0.96995 * 120.00579 * 24.99484 * 19 17 16 38 38 H 1.09003 * 109.52586 * 297.49622 * 24 22 20 39 39 H 1.09008 * 109.52273 * 57.68756 * 24 22 20 40 40 H 1.09000 * 109.54195 * 183.15082 * 25 24 22 41 41 H 1.09004 * 109.54058 * 62.88953 * 25 24 22 42 42 H 1.09004 * 109.52185 * 297.07499 * 26 25 24 43 43 H 1.08998 * 109.57926 * 176.91800 * 26 25 24 44 44 H 1.08999 * 109.48361 * 182.41151 * 27 26 25 45 45 H 1.08995 * 109.48311 * 62.37858 * 27 26 25 46 46 H 1.08998 * 113.61260 * 334.56354 * 29 14 13 47 47 H 1.08996 * 113.61846 * 105.46646 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1018 1.6965 1.2126 6 1 3.1019 1.6965 -1.2125 7 6 2.0090 -1.2033 -0.0057 8 1 3.0889 -1.2032 -0.0061 9 7 1.3234 -2.3906 -0.0118 10 6 1.9973 -3.5578 -0.0178 11 8 3.2103 -3.5577 -0.0183 12 6 1.2438 -4.8629 -0.0240 13 7 2.1984 -5.9794 -0.0305 14 6 1.4982 -7.2707 -0.0372 15 1 0.4883 -7.2025 -0.4417 16 6 2.3269 -8.4177 -0.6393 17 6 1.7630 -9.3081 0.4806 18 1 0.8250 -9.7977 0.2186 19 7 2.7486 -10.2308 1.0491 20 6 2.3414 -11.3727 1.6379 21 8 1.1592 -11.6366 1.6967 22 6 3.3554 -12.3222 2.2223 23 1 4.0865 -12.5882 1.4589 24 6 4.0670 -11.6486 3.3985 25 6 5.0525 -12.6402 4.0246 26 6 4.2917 -13.8998 4.4496 27 6 3.5714 -14.4865 3.2328 28 8 2.6938 -13.5030 2.6806 29 6 1.5776 -8.0215 1.3025 30 1 -0.4850 0.8401 0.0040 31 1 0.3534 -2.3906 -0.0118 32 1 0.6175 -4.9250 0.8660 33 1 0.6168 -4.9162 -0.9139 34 1 2.8327 -5.9082 -0.8120 35 1 2.0027 -8.7134 -1.6371 36 1 3.4033 -8.2600 -0.5734 37 1 3.6942 -10.0199 1.0018 38 1 4.6087 -10.7721 3.0430 39 1 3.3317 -11.3459 4.1442 40 1 5.5221 -12.1859 4.8971 41 1 5.8169 -12.9050 3.2940 42 1 3.5609 -13.6426 5.2164 43 1 4.9931 -14.6337 4.8465 44 1 2.9935 -15.3588 3.5381 45 1 4.3054 -14.7808 2.4828 46 1 2.4494 -7.7563 1.9007 47 1 0.6488 -7.9974 1.8724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690331663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:03 Heat of formation + Delta-G solvation = -104.064493 kcal Electronic energy + Delta-G solvation = -26850.103366 eV Core-core repulsion = 22840.051719 eV Total energy + Delta-G solvation = -4010.051647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71183 -39.53716 -38.38538 -37.83607 -34.71686 -34.13166 -33.80387 -32.78880 -31.49311 -31.17146 -27.07759 -26.16736 -25.78408 -24.45167 -24.20634 -22.70756 -21.01533 -20.62008 -19.92022 -19.17174 -17.89536 -17.67869 -17.16620 -16.33813 -16.14512 -15.76535 -15.47465 -15.22639 -15.15161 -14.84779 -14.73592 -14.41972 -14.19004 -13.95544 -13.42500 -13.33710 -13.21199 -13.10734 -12.55806 -12.50458 -12.08498 -11.94247 -11.77921 -11.69434 -11.56278 -11.52651 -11.24675 -11.01527 -10.99362 -10.91027 -10.63052 -10.44519 -10.21440 -10.01419 -9.78960 -9.50293 -9.21144 -8.45294 -8.08771 -7.96171 -6.41668 -3.82716 2.34756 2.54350 3.19869 3.25664 3.29903 3.63109 3.90838 4.10960 4.18438 4.28865 4.32783 4.37599 4.43190 4.44829 4.48680 4.58426 4.66823 4.83288 4.88209 4.94129 5.07401 5.20106 5.20279 5.26108 5.29575 5.42166 5.43082 5.53618 5.55994 5.56478 5.67065 5.77926 5.79457 5.85015 5.96075 6.02369 6.07592 6.27099 6.40097 6.67973 7.22601 7.28608 7.54768 7.64522 7.98582 8.05950 8.61077 9.17508 9.54237 10.05571 10.75906 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.001738 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.121908 B =16106.666471 C =16599.889660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.585 6.585 12 C 0.049 3.951 13 N -0.654 5.654 14 C 0.062 3.938 15 H 0.076 0.924 16 C -0.148 4.148 17 C 0.123 3.877 18 H 0.115 0.885 19 N -0.714 5.714 20 C 0.520 3.480 21 O -0.520 6.520 22 C 0.075 3.925 23 H 0.083 0.917 24 C -0.147 4.147 25 C -0.121 4.121 26 C -0.160 4.160 27 C 0.059 3.941 28 O -0.355 6.355 29 C -0.137 4.137 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.350 0.650 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.402 0.598 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.722 -26.997 3.911 28.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.083 4.083 13 N -0.286 5.286 14 C -0.049 4.049 15 H 0.094 0.906 16 C -0.187 4.187 17 C 0.018 3.982 18 H 0.133 0.867 19 N -0.366 5.366 20 C 0.305 3.695 21 O -0.394 6.394 22 C 0.013 3.987 23 H 0.100 0.900 24 C -0.185 4.185 25 C -0.159 4.159 26 C -0.197 4.197 27 C -0.017 4.017 28 O -0.273 6.273 29 C -0.176 4.176 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.171 0.829 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.236 0.764 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.070 0.930 46 H 0.113 0.887 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.409 -27.040 4.612 28.169 hybrid contribution 0.197 1.024 -0.831 1.334 sum 6.606 -26.015 3.780 27.106 Atomic orbital electron populations 1.69607 1.05931 1.28273 1.50456 1.25267 0.95639 0.99729 0.97295 0.85913 0.78753 0.80455 0.79051 1.20975 1.19894 1.19931 1.19654 0.93342 0.82266 1.47766 0.87980 1.41866 1.09217 1.04613 1.64283 1.19821 0.88379 0.84741 0.84475 1.90514 1.13775 1.87097 1.55552 1.21743 0.94425 0.90956 1.01226 1.60210 1.18383 0.99328 1.50728 1.22799 0.96795 0.88437 0.96903 0.90638 1.23625 1.01411 0.95453 0.98174 1.22409 0.93195 0.87976 0.94622 0.86726 1.45866 1.10568 1.20879 1.59318 1.20176 0.89538 0.81697 0.78107 1.90727 1.17660 1.74658 1.56332 1.21896 0.93274 0.87048 0.96460 0.89953 1.22160 0.99307 0.98987 0.98039 1.21588 0.97517 0.95527 1.01236 1.22227 1.00306 0.98114 0.99091 1.22668 0.93752 0.91057 0.94265 1.88071 1.33013 1.26194 1.79982 1.23582 1.03185 0.93606 0.97277 0.91811 0.77437 0.89570 0.93780 0.82935 0.90744 0.88662 0.76376 0.90001 0.90187 0.90780 0.91475 0.90749 0.90597 0.88327 0.92998 0.88718 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.29 5.29 -10.96 -0.06 -14.34 16 10 C 0.44 10.35 7.82 -10.99 -0.09 10.26 16 11 O -0.58 -15.75 15.78 5.55 0.09 -15.66 16 12 C 0.05 0.86 6.01 -4.97 -0.03 0.83 16 13 N -0.65 -10.09 6.18 -107.13 -0.66 -10.75 16 14 C 0.06 0.72 4.14 -66.90 -0.28 0.45 16 15 H 0.08 0.85 7.87 -51.93 -0.41 0.44 16 16 C -0.15 -1.36 7.40 -25.92 -0.19 -1.55 16 17 C 0.12 1.22 4.24 -67.12 -0.28 0.94 16 18 H 0.11 1.28 7.47 -51.93 -0.39 0.89 16 19 N -0.71 -6.25 5.32 -53.01 -0.28 -6.54 16 20 C 0.52 5.79 7.18 -10.98 -0.08 5.71 16 21 O -0.52 -8.19 16.11 -14.29 -0.23 -8.42 16 22 C 0.07 0.63 3.05 -27.84 -0.09 0.55 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 24 C -0.15 -0.98 5.37 -26.59 -0.14 -1.12 16 25 C -0.12 -0.63 6.03 -26.55 -0.16 -0.79 16 26 C -0.16 -0.86 6.14 -26.60 -0.16 -1.03 16 27 C 0.06 0.39 6.84 37.20 0.25 0.64 16 28 O -0.35 -3.74 9.94 -55.09 -0.55 -4.29 16 29 C -0.14 -1.56 7.68 -25.92 -0.20 -1.75 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.35 5.51 8.24 -39.29 -0.32 5.18 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.40 2.46 8.58 -40.82 -0.35 2.11 16 38 H 0.08 0.42 7.99 -51.93 -0.41 0.01 16 39 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -34.65 387.09 -9.48 -44.13 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -7.64 Total: 12.76 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -1.68 Total: 5.09 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.28 Total: -55.45 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.69 Total: -28.38 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.65 -9.48 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690331663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.935 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds