Wall clock time and date at job start Tue Mar 31 2020 05:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99755 * 2 1 4 4 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47056 * 119.99730 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99759 * 3 2 1 7 7 C 1.38947 * 120.00367 * 180.26985 * 2 1 3 8 8 H 1.07992 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99958 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99760 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99768 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46994 * 179.97438 * 12 10 9 14 14 C 1.46893 * 111.00154 * 180.02562 * 13 12 10 15 15 H 1.09003 * 112.85021 * 23.80074 * 14 13 12 16 16 C 1.53782 * 113.61431 * 154.99857 * 14 13 12 17 17 C 1.53781 * 87.08206 * 139.98324 * 16 14 13 18 18 H 1.09003 * 113.61714 * 89.11186 * 17 16 14 19 19 N 1.46497 * 113.61345 * 220.02247 * 17 16 14 20 20 C 1.34783 * 119.99737 * 204.99547 * 19 17 16 21 21 O 1.21274 * 119.99998 * 0.02562 * 20 19 17 22 22 C 1.50698 * 119.99876 * 179.97438 * 20 19 17 23 23 H 1.09001 * 109.48178 * 305.02466 * 22 20 19 24 24 C 1.53092 * 109.47937 * 65.05836 * 22 20 19 25 25 C 1.53183 * 109.16342 * 177.58913 * 24 22 20 26 26 C 1.53170 * 109.03756 * 303.02373 * 25 24 22 27 27 C 1.53090 * 109.16553 * 56.97779 * 26 25 24 28 28 O 1.42898 * 109.48218 * 184.99982 * 22 20 19 29 29 C 1.53780 * 113.61543 * 252.49750 * 14 13 12 30 30 H 0.97005 * 120.00032 * 359.72583 * 1 2 3 31 31 H 0.97000 * 119.99715 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47211 * 299.99931 * 12 10 9 33 33 H 1.08997 * 109.47040 * 59.99806 * 12 10 9 34 34 H 1.00903 * 110.99451 * 303.95710 * 13 12 10 35 35 H 1.09002 * 113.61248 * 254.52562 * 16 14 13 36 36 H 1.08994 * 113.61425 * 25.34461 * 16 14 13 37 37 H 0.96995 * 120.00579 * 24.99484 * 19 17 16 38 38 H 1.09003 * 109.52586 * 297.49622 * 24 22 20 39 39 H 1.09008 * 109.52273 * 57.68756 * 24 22 20 40 40 H 1.09000 * 109.54195 * 183.15082 * 25 24 22 41 41 H 1.09004 * 109.54058 * 62.88953 * 25 24 22 42 42 H 1.09004 * 109.52185 * 297.07499 * 26 25 24 43 43 H 1.08998 * 109.57926 * 176.91800 * 26 25 24 44 44 H 1.08999 * 109.48361 * 182.41151 * 27 26 25 45 45 H 1.08995 * 109.48311 * 62.37858 * 27 26 25 46 46 H 1.08998 * 113.61260 * 334.56354 * 29 14 13 47 47 H 1.08996 * 113.61846 * 105.46646 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 1.2831 2.7465 -0.0006 5 1 3.1018 1.6965 1.2126 6 1 3.1019 1.6965 -1.2125 7 6 2.0090 -1.2033 -0.0057 8 1 3.0889 -1.2032 -0.0061 9 7 1.3234 -2.3906 -0.0118 10 6 1.9973 -3.5578 -0.0178 11 8 3.2103 -3.5577 -0.0183 12 6 1.2438 -4.8629 -0.0240 13 7 2.1984 -5.9794 -0.0305 14 6 1.4982 -7.2707 -0.0372 15 1 0.4883 -7.2025 -0.4417 16 6 2.3269 -8.4177 -0.6393 17 6 1.7630 -9.3081 0.4806 18 1 0.8250 -9.7977 0.2186 19 7 2.7486 -10.2308 1.0491 20 6 2.3414 -11.3727 1.6379 21 8 1.1592 -11.6366 1.6967 22 6 3.3554 -12.3222 2.2223 23 1 4.0865 -12.5882 1.4589 24 6 4.0670 -11.6486 3.3985 25 6 5.0525 -12.6402 4.0246 26 6 4.2917 -13.8998 4.4496 27 6 3.5714 -14.4865 3.2328 28 8 2.6938 -13.5030 2.6806 29 6 1.5776 -8.0215 1.3025 30 1 -0.4850 0.8401 0.0040 31 1 0.3534 -2.3906 -0.0118 32 1 0.6175 -4.9250 0.8660 33 1 0.6168 -4.9162 -0.9139 34 1 2.8327 -5.9082 -0.8120 35 1 2.0027 -8.7134 -1.6371 36 1 3.4033 -8.2600 -0.5734 37 1 3.6942 -10.0199 1.0018 38 1 4.6087 -10.7721 3.0430 39 1 3.3317 -11.3459 4.1442 40 1 5.5221 -12.1859 4.8971 41 1 5.8169 -12.9050 3.2940 42 1 3.5609 -13.6426 5.2164 43 1 4.9931 -14.6337 4.8465 44 1 2.9935 -15.3588 3.5381 45 1 4.3054 -14.7808 2.4828 46 1 2.4494 -7.7563 1.9007 47 1 0.6488 -7.9974 1.8724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690331663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:02 Heat of formation + Delta-G solvation = -130.608709 kcal Electronic energy + Delta-G solvation = -26851.254410 eV Core-core repulsion = 22840.051719 eV Total energy + Delta-G solvation = -4011.202691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49917 -40.43838 -39.89995 -38.93535 -36.13610 -35.51805 -34.66009 -33.81117 -33.21870 -32.09947 -28.52043 -26.99738 -26.69014 -25.91922 -24.89550 -23.69425 -21.73542 -21.25523 -21.15806 -20.64221 -19.88990 -18.43889 -18.07244 -17.61090 -16.92342 -16.83915 -16.65468 -16.37550 -16.22099 -15.95841 -15.79514 -15.46508 -15.35681 -15.11576 -14.79429 -14.36561 -14.23982 -13.77920 -13.63016 -13.49984 -13.36455 -13.24535 -13.10359 -12.86312 -12.54225 -12.43300 -12.27997 -12.13992 -12.12727 -11.97163 -11.92991 -11.54438 -11.49069 -11.39900 -10.74459 -10.47930 -10.32850 -10.05516 -10.01465 -9.31903 -8.46103 -5.95191 1.40383 1.42218 1.50459 1.53285 1.83133 2.05667 2.29714 2.92742 3.08864 3.21218 3.48183 3.52212 3.64542 3.67276 3.77007 3.88975 3.94847 4.01475 4.02468 4.06483 4.19829 4.31528 4.46235 4.48420 4.55513 4.61111 4.64133 4.78401 4.81863 4.84590 4.85640 5.00926 5.02301 5.06955 5.09422 5.15624 5.16587 5.35448 5.40995 5.54346 5.92781 6.10832 6.15096 6.44497 6.54425 6.60241 7.12559 7.19666 7.56567 8.11372 8.70949 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.001738 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.121908 B =16106.666471 C =16599.889660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.063 3.937 13 N -0.665 5.665 14 C 0.058 3.942 15 H 0.085 0.915 16 C -0.129 4.129 17 C 0.128 3.872 18 H 0.103 0.897 19 N -0.699 5.699 20 C 0.516 3.484 21 O -0.574 6.574 22 C 0.076 3.924 23 H 0.112 0.888 24 C -0.144 4.144 25 C -0.119 4.119 26 C -0.158 4.158 27 C 0.053 3.947 28 O -0.393 6.393 29 C -0.138 4.138 30 H 0.277 0.723 31 H 0.396 0.604 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.348 0.652 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.417 0.583 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.087 0.913 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.028 -27.647 3.486 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.509 6.509 12 C -0.069 4.069 13 N -0.297 5.297 14 C -0.053 4.053 15 H 0.103 0.897 16 C -0.168 4.168 17 C 0.022 3.978 18 H 0.121 0.879 19 N -0.351 5.351 20 C 0.302 3.698 21 O -0.453 6.453 22 C 0.015 3.985 23 H 0.129 0.871 24 C -0.182 4.182 25 C -0.156 4.156 26 C -0.196 4.196 27 C -0.023 4.023 28 O -0.312 6.312 29 C -0.178 4.178 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.168 0.832 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.255 0.745 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.734 -27.699 4.184 29.061 hybrid contribution -0.210 1.161 -0.675 1.359 sum 7.524 -26.538 3.509 27.806 Atomic orbital electron populations 1.69673 1.06866 1.29357 1.50249 1.26061 0.96551 1.02482 0.96253 0.84975 0.77735 0.76569 0.78970 1.19575 1.19735 1.19585 1.19650 0.92760 0.84036 1.50043 0.90185 1.41950 1.09338 1.04779 1.65032 1.20876 0.88274 0.86130 0.82169 1.90481 1.15744 1.87966 1.56685 1.21596 0.94187 0.88267 1.02855 1.60188 1.18526 1.00079 1.50957 1.22911 0.97546 0.87215 0.97585 0.89682 1.23527 1.01530 0.93247 0.98484 1.22229 0.93302 0.87580 0.94662 0.87868 1.45744 1.11254 1.19959 1.58172 1.20792 0.89369 0.82230 0.77393 1.90697 1.20011 1.75970 1.58596 1.22001 0.92591 0.86218 0.97650 0.87093 1.22160 0.99099 1.00014 0.96918 1.21616 0.97310 0.94838 1.01875 1.22222 1.00280 0.98850 0.98229 1.22886 0.93907 0.90444 0.95084 1.88022 1.35225 1.27348 1.80562 1.23561 1.02472 0.94529 0.97205 0.91318 0.77026 0.88390 0.91410 0.83162 0.89111 0.87732 0.74525 0.88257 0.92517 0.90100 0.89637 0.92363 0.88572 0.87984 0.91161 0.89441 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.80 13.05 21.66 0.28 -49.52 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.99 42.81 29.55 68.60 2.03 44.83 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -29.45 5.29 -306.99 -1.62 -31.07 16 10 C 0.44 20.65 7.82 87.66 0.69 21.34 16 11 O -0.62 -33.95 15.78 -3.07 -0.05 -34.00 16 12 C 0.06 2.14 6.01 85.56 0.51 2.65 16 13 N -0.66 -19.63 6.18 -492.86 -3.05 -22.68 16 14 C 0.06 1.25 4.14 45.44 0.19 1.44 16 15 H 0.09 1.73 7.87 -2.39 -0.02 1.71 16 16 C -0.13 -2.08 7.40 31.12 0.23 -1.85 16 17 C 0.13 2.39 4.24 45.52 0.19 2.59 16 18 H 0.10 2.26 7.47 -2.39 -0.02 2.24 16 19 N -0.70 -11.32 5.32 -440.03 -2.34 -13.66 16 20 C 0.52 11.29 7.18 87.66 0.63 11.92 16 21 O -0.57 -18.64 16.11 15.97 0.26 -18.38 16 22 C 0.08 1.20 3.05 29.88 0.09 1.29 16 23 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 24 C -0.14 -1.72 5.37 30.69 0.16 -1.56 16 25 C -0.12 -0.96 6.03 30.71 0.19 -0.78 16 26 C -0.16 -1.48 6.14 30.68 0.19 -1.29 16 27 C 0.05 0.63 6.84 72.01 0.49 1.12 16 28 O -0.39 -8.17 9.94 -129.99 -1.29 -9.46 16 29 C -0.14 -3.02 7.68 31.12 0.24 -2.78 16 30 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 31 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 32 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 34 H 0.35 10.50 8.24 -89.69 -0.74 9.76 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.54 8.12 -2.39 -0.02 1.52 16 37 H 0.42 4.15 8.58 -92.71 -0.80 3.35 16 38 H 0.10 0.80 7.99 -2.39 -0.02 0.78 16 39 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.09 0.41 8.14 -2.38 -0.02 0.40 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -76.81 387.09 -1.97 -78.78 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -1.27 Total: 39.57 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.08 Total: 15.60 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -6.73 Total: -116.93 kcal Atomic # 8 Polarization: -60.76 SS G_CDS: -1.08 Total: -61.84 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -76.81 -1.97 -78.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690331663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.833 kcal (2) G-P(sol) polarization free energy of solvation -76.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds