Wall clock time and date at job start Tue Mar 31 2020 05:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.51366 * 2 1 4 4 N 1.46506 * 109.47073 * 60.00180 * 3 2 1 5 5 C 1.34769 * 120.00253 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00070 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.99902 * 180.02562 * 5 4 3 8 8 H 1.08995 * 109.67682 * 59.50092 * 7 5 4 9 9 C 1.53348 * 109.67211 * 179.97438 * 7 5 4 10 10 C 1.52920 * 108.80801 * 187.21699 * 9 7 5 11 11 N 1.45821 * 110.45255 * 309.50159 * 10 9 7 12 12 C 1.33349 * 124.16504 * 18.74571 * 11 10 9 13 13 O 1.21283 * 118.24344 * 177.97860 * 12 11 10 14 14 C 1.50174 * 123.51214 * 357.96446 * 12 11 10 15 15 C 1.53295 * 109.51321 * 239.90285 * 2 1 3 16 16 N 1.47152 * 108.38260 * 292.32757 * 15 2 1 17 17 C 1.36940 * 120.98310 * 129.44516 * 16 15 2 18 18 H 1.08003 * 119.99968 * 333.75992 * 17 16 15 19 19 C 1.38808 * 120.00178 * 153.75738 * 17 16 15 20 20 N 1.31618 * 119.99893 * 160.00308 * 19 17 16 21 21 Si 1.86798 * 120.00217 * 340.00409 * 19 17 16 22 22 H 1.48507 * 109.47051 * 91.87031 * 21 19 17 23 23 H 1.48495 * 109.47478 * 211.87057 * 21 19 17 24 24 H 1.48505 * 109.47245 * 331.87488 * 21 19 17 25 25 C 1.47148 * 118.03872 * 309.46253 * 16 15 2 26 26 C 1.53299 * 108.38142 * 50.53446 * 25 16 15 27 27 O 1.42953 * 109.26474 * 307.72253 * 26 25 16 28 28 H 1.09007 * 109.46943 * 59.99561 * 1 2 3 29 29 H 1.08996 * 109.47289 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46928 * 299.99798 * 1 2 3 31 31 H 1.09000 * 109.47321 * 300.00021 * 3 2 1 32 32 H 1.09007 * 109.47166 * 179.97438 * 3 2 1 33 33 H 0.97001 * 119.99250 * 359.97438 * 4 3 2 34 34 H 1.09004 * 109.60593 * 307.05349 * 9 7 5 35 35 H 1.09006 * 109.60661 * 67.37962 * 9 7 5 36 36 H 1.08993 * 109.30128 * 69.64175 * 10 9 7 37 37 H 1.09005 * 109.29905 * 189.01796 * 10 9 7 38 38 H 0.96999 * 117.88416 * 198.93401 * 11 10 9 39 39 H 1.09003 * 109.40081 * 257.44655 * 14 12 11 40 40 H 1.08999 * 109.40369 * 137.70683 * 14 12 11 41 41 H 1.08998 * 109.68227 * 52.05015 * 15 2 1 42 42 H 1.08998 * 109.68705 * 172.56753 * 15 2 1 43 43 H 0.97006 * 120.00191 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.68774 * 170.26025 * 25 16 15 45 45 H 1.09003 * 109.68483 * 290.81369 * 25 16 15 46 46 H 1.09002 * 109.51224 * 67.62333 * 26 25 16 47 47 H 1.08998 * 109.51164 * 187.72207 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5532 2.1331 1.1962 5 6 1.8793 3.4233 1.4093 6 8 2.5770 4.0122 0.6110 7 6 1.3780 4.1338 2.6401 8 1 1.7326 3.6173 3.5320 9 6 1.8875 5.5801 2.6448 10 6 1.5219 6.2273 3.9812 11 7 0.1077 6.0265 4.2745 12 6 -0.6521 5.0952 3.6969 13 8 -1.8086 4.9985 4.0491 14 6 -0.1525 4.1601 2.6334 15 6 2.0420 -0.7246 -1.2501 16 7 1.6970 -2.1504 -1.1341 17 6 1.0619 -2.8072 -2.1541 18 1 0.4409 -2.2579 -2.8462 19 6 1.2163 -4.1791 -2.2986 20 7 0.3382 -4.8706 -2.9937 21 14 2.6702 -5.0440 -1.5065 22 1 2.2858 -5.5202 -0.1534 23 1 3.0728 -6.2028 -2.3432 24 1 3.8080 -4.0964 -1.3929 25 6 2.0542 -2.8494 0.1105 26 6 1.5416 -2.0212 1.2943 27 8 2.0076 -0.6759 1.1657 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6781 1.9563 -0.8900 32 1 3.1311 1.4413 0.0005 33 1 0.9949 1.6621 1.8345 34 1 2.9703 5.5869 2.5194 35 1 1.4215 6.1347 1.8302 36 1 2.1194 5.7782 4.7744 37 1 1.7349 7.2953 3.9345 38 1 -0.3070 6.6094 4.9297 39 1 -0.5045 4.4987 1.6589 40 1 -0.5327 3.1568 2.8256 41 1 1.5698 -0.3036 -2.1377 42 1 3.1239 -0.6128 -1.3220 43 1 0.4462 -5.8293 -3.0950 44 1 1.5900 -3.8355 0.1240 45 1 3.1374 -2.9521 0.1760 46 1 0.4516 -2.0293 1.2995 47 1 1.9133 -2.4486 2.2256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107867423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:27 Heat of formation + Delta-G solvation = -120.104395 kcal Electronic energy + Delta-G solvation = -28791.020095 eV Core-core repulsion = 24780.272905 eV Total energy + Delta-G solvation = -4010.747189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.72838 -40.96626 -40.13179 -37.36570 -36.73323 -35.87291 -34.33711 -33.69872 -33.00496 -30.62377 -29.94749 -28.17465 -27.76497 -25.92759 -24.81335 -24.13852 -23.06483 -21.42367 -20.51832 -20.14063 -19.00089 -18.62546 -18.01953 -17.65868 -17.32976 -17.11948 -16.76595 -16.42733 -16.01754 -15.97008 -15.78478 -15.54975 -15.45278 -15.10413 -14.79354 -14.65105 -14.42563 -14.22636 -13.96867 -13.76562 -13.41647 -13.26953 -12.95046 -12.84177 -12.68897 -12.58942 -12.34936 -12.18001 -12.08851 -12.04721 -12.02440 -11.56125 -11.39494 -11.26970 -11.05530 -10.64582 -10.47184 -10.07144 -10.05541 -8.95111 -8.18921 -5.51995 1.26294 1.40426 1.48191 1.55650 1.62421 2.12494 2.33260 2.38079 2.68262 3.01150 3.21881 3.44050 3.62080 3.70023 3.79134 3.82707 3.90119 3.98696 4.21442 4.25646 4.26943 4.30118 4.43991 4.46635 4.57596 4.64692 4.67220 4.69099 4.74799 4.77067 4.85428 4.89383 4.94697 5.02806 5.04006 5.06576 5.23875 5.38170 5.41202 5.78387 5.83213 6.08666 6.23056 6.31162 6.54738 6.82143 7.18428 7.23008 7.54659 7.94933 9.00452 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.027044 B = 0.002652 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.112111 B =10556.788794 C =10830.110956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 C 0.147 3.853 4 N -0.709 5.709 5 C 0.519 3.481 6 O -0.576 6.576 7 C -0.100 4.100 8 H 0.128 0.872 9 C -0.117 4.117 10 C 0.112 3.888 11 N -0.711 5.711 12 C 0.523 3.477 13 O -0.606 6.606 14 C -0.123 4.123 15 C 0.124 3.876 16 N -0.616 5.616 17 C -0.244 4.244 18 H 0.058 0.942 19 C -0.033 4.033 20 N -0.955 5.955 21 Si 0.945 3.055 22 H -0.269 1.269 23 H -0.313 1.313 24 H -0.267 1.267 25 C 0.081 3.919 26 C 0.055 3.945 27 O -0.375 6.375 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.413 0.587 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.406 0.594 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.262 0.738 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.059 0.941 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 21.519 17.660 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 C 0.022 3.978 4 N -0.361 5.361 5 C 0.306 3.694 6 O -0.455 6.455 7 C -0.121 4.121 8 H 0.146 0.854 9 C -0.155 4.155 10 C -0.011 4.011 11 N -0.361 5.361 12 C 0.310 3.690 13 O -0.488 6.488 14 C -0.163 4.163 15 C -0.002 4.002 16 N -0.342 5.342 17 C -0.373 4.373 18 H 0.076 0.924 19 C -0.228 4.228 20 N -0.601 5.601 21 Si 0.775 3.225 22 H -0.196 1.196 23 H -0.242 1.242 24 H -0.192 1.192 25 C -0.044 4.044 26 C -0.023 4.023 27 O -0.294 6.294 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.250 0.750 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.242 0.758 39 H 0.123 0.877 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.051 0.949 46 H 0.077 0.923 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.406 21.682 17.160 28.000 hybrid contribution -0.020 -1.321 -0.185 1.334 sum 4.386 20.361 16.975 26.869 Atomic orbital electron populations 1.22197 0.94277 1.02583 1.02852 1.22073 0.94415 0.91123 0.86762 1.21134 0.99398 0.88399 0.88866 1.45881 1.53150 1.11782 1.25248 1.20839 0.79535 0.81461 0.87532 1.90711 1.39679 1.66905 1.48254 1.21434 0.95162 0.98334 0.97210 0.85379 1.21727 1.03544 0.92552 0.97725 1.21647 0.79539 1.03114 0.96847 1.45537 1.12288 1.34882 1.43410 1.20200 0.85090 0.81229 0.82451 1.90776 1.20218 1.72841 1.65012 1.21619 0.94422 1.01242 0.99029 1.21649 0.97889 0.83726 0.96931 1.44380 1.69194 1.07103 1.13479 1.18818 1.20390 0.91047 1.07049 0.92447 1.25835 1.00196 0.97417 0.99390 1.69946 1.36257 1.07296 1.46606 0.85972 0.81870 0.77339 0.77364 1.19551 1.24238 1.19220 1.22128 0.98030 0.96826 0.87437 1.23037 0.99237 0.82004 0.98042 1.87850 1.73005 1.25643 1.42897 0.91553 0.93041 0.90328 0.89665 0.91483 0.74981 0.88431 0.91220 0.89170 0.87572 0.75806 0.87721 0.86693 0.91122 0.94741 0.92904 0.91868 0.94868 0.92280 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 7.92 71.98 0.57 -3.83 16 2 C 0.10 2.77 0.76 -10.70 -0.01 2.76 16 3 C 0.15 3.54 4.82 86.38 0.42 3.96 16 4 N -0.71 -13.45 5.07 -463.05 -2.35 -15.80 16 5 C 0.52 9.90 7.13 87.66 0.62 10.53 16 6 O -0.58 -15.43 15.90 -3.04 -0.05 -15.47 16 7 C -0.10 -1.16 2.60 -11.40 -0.03 -1.19 16 8 H 0.13 1.00 8.13 -2.39 -0.02 0.98 16 9 C -0.12 -1.12 4.69 30.68 0.14 -0.98 16 10 C 0.11 0.52 7.18 86.48 0.62 1.14 16 11 N -0.71 -7.16 5.45 -467.18 -2.55 -9.71 16 12 C 0.52 8.87 7.71 87.71 0.68 9.54 16 13 O -0.61 -16.23 17.78 -3.04 -0.05 -16.29 16 14 C -0.12 -1.63 5.22 29.71 0.15 -1.47 16 15 C 0.12 4.53 5.40 86.35 0.47 5.00 16 16 N -0.62 -27.59 2.35 -697.55 -1.64 -29.23 16 17 C -0.24 -13.29 10.10 84.03 0.85 -12.44 16 18 H 0.06 3.42 8.06 -2.91 -0.02 3.39 16 19 C -0.03 -1.90 5.26 84.86 0.45 -1.46 16 20 N -0.95 -58.75 13.97 21.65 0.30 -58.45 16 21 Si 0.95 45.53 24.29 68.60 1.67 47.19 16 22 H -0.27 -11.98 6.58 99.48 0.65 -11.33 16 23 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 24 H -0.27 -12.56 6.55 99.48 0.65 -11.91 16 25 C 0.08 3.23 4.38 86.36 0.38 3.61 16 26 C 0.05 1.66 6.60 72.08 0.48 2.14 16 27 O -0.37 -10.91 9.98 -148.98 -1.49 -12.40 16 28 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.05 1.72 6.12 -2.39 -0.01 1.71 16 30 H 0.08 1.65 6.86 -2.39 -0.02 1.63 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.41 6.48 6.97 -92.71 -0.65 5.83 16 34 H 0.10 0.98 7.90 -2.39 -0.02 0.96 16 35 H 0.07 0.85 8.13 -2.38 -0.02 0.83 16 36 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 38 H 0.41 3.43 8.80 -92.71 -0.82 2.61 16 39 H 0.10 1.47 8.10 -2.39 -0.02 1.45 16 40 H 0.11 1.36 7.98 -2.39 -0.02 1.35 16 41 H 0.07 2.59 7.95 -2.39 -0.02 2.57 16 42 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.26 15.36 8.31 -92.70 -0.77 14.59 16 44 H 0.06 2.76 4.61 -2.39 -0.01 2.75 16 45 H 0.03 1.34 6.87 -2.39 -0.02 1.33 16 46 H 0.06 1.81 6.26 -2.39 -0.01 1.79 16 47 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -76.36 362.82 -0.94 -77.30 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.57 Total: 15.56 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 5.79 Total: 17.30 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -6.23 Total: -113.19 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.59 Total: -44.16 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.19 kcal Total: -76.36 -0.94 -77.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107867423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.809 kcal (2) G-P(sol) polarization free energy of solvation -76.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds