Wall clock time and date at job start Tue Mar 31 2020 04:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 110.43556 * 2 1 4 4 O 1.21283 * 120.00214 * 241.08893 * 3 2 1 5 5 N 1.34773 * 119.99815 * 61.09465 * 3 2 1 6 6 C 1.46504 * 120.00189 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47352 * 179.97438 * 6 5 3 8 8 H 1.08992 * 108.56700 * 57.94286 * 7 6 5 9 9 C 1.46922 * 108.61839 * 175.75455 * 7 6 5 10 10 N 1.50119 * 106.77410 * 177.92382 * 9 7 6 11 11 C 1.36932 * 120.63177 * 111.32977 * 10 9 7 12 12 H 1.08003 * 119.99740 * 155.72061 * 11 10 9 13 13 C 1.38807 * 120.00512 * 335.71814 * 11 10 9 14 14 N 1.31619 * 120.00001 * 340.61435 * 13 11 10 15 15 Si 1.86805 * 120.00108 * 160.61099 * 13 11 10 16 16 H 1.48494 * 109.47203 * 60.00088 * 15 13 11 17 17 H 1.48500 * 109.47102 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46877 * 299.99874 * 15 13 11 19 19 C 1.43422 * 118.72831 * 291.35143 * 10 9 7 20 20 C 1.55334 * 116.23946 * 89.34909 * 19 10 9 21 21 C 1.55184 * 108.87322 * 319.46332 * 20 19 10 22 22 O 1.39639 * 110.56979 * 322.14391 * 21 20 19 23 23 C 1.54633 * 110.59565 * 237.38562 * 2 1 3 24 24 C 1.54475 * 101.76591 * 216.46618 * 23 2 1 25 25 N 1.46768 * 105.47241 * 25.41662 * 24 23 2 26 26 C 1.34413 * 111.30325 * 342.98147 * 25 24 23 27 27 O 1.21279 * 124.94888 * 180.44014 * 26 25 24 28 28 H 1.08994 * 109.47376 * 60.69443 * 1 2 3 29 29 H 1.09000 * 109.47299 * 180.69937 * 1 2 3 30 30 H 1.09005 * 109.46973 * 300.69564 * 1 2 3 31 31 H 0.96998 * 120.00616 * 359.97438 * 5 3 2 32 32 H 1.08996 * 109.47206 * 59.99356 * 6 5 3 33 33 H 1.09007 * 109.46868 * 299.99493 * 6 5 3 34 34 H 1.09001 * 109.98698 * 297.23739 * 9 7 6 35 35 H 1.09000 * 109.99099 * 58.51381 * 9 7 6 36 36 H 0.96999 * 119.99811 * 179.97438 * 14 13 11 37 37 H 1.08999 * 108.12683 * 327.59682 * 19 10 9 38 38 H 1.09000 * 108.12588 * 211.10812 * 19 10 9 39 39 H 1.09000 * 109.56608 * 79.28027 * 20 19 10 40 40 H 1.08996 * 109.56927 * 199.64135 * 20 19 10 41 41 H 1.09006 * 109.25692 * 82.42659 * 21 20 19 42 42 H 1.09001 * 109.25358 * 201.85969 * 21 20 19 43 43 H 1.08997 * 110.97203 * 334.58771 * 23 2 1 44 44 H 1.09004 * 110.96943 * 98.34682 * 23 2 1 45 45 H 1.09002 * 110.25074 * 266.41718 * 24 23 2 46 46 H 1.09004 * 110.24873 * 144.41734 * 24 23 2 47 47 H 0.96995 * 124.34619 * 163.00600 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0561 1.4121 0.0000 4 8 2.7437 1.8031 -0.9194 5 7 1.7627 2.2405 1.0218 6 6 2.2737 3.6135 1.0216 7 6 1.7980 4.3350 2.2842 8 1 2.1452 3.7777 3.1541 9 6 2.4030 5.6735 2.3157 10 7 1.8701 6.3611 3.5391 11 6 2.6924 6.6358 4.5990 12 1 2.4471 7.4383 5.2790 13 6 3.8412 5.8830 4.7997 14 7 3.9580 4.6982 4.2384 15 14 5.2215 6.5513 5.8664 16 1 4.7110 6.7993 7.2385 17 1 6.3282 5.5626 5.9206 18 1 5.7229 7.8234 5.2872 19 6 0.4832 6.7244 3.5767 20 6 -0.4918 5.6549 4.1411 21 6 -0.0661 4.2591 3.6132 22 8 0.3744 4.3480 2.2911 23 6 2.0739 -0.7802 -1.2193 24 6 3.3232 -1.4656 -0.6228 25 7 3.0582 -1.5787 0.8163 26 6 2.0595 -0.7624 1.1946 27 8 1.6438 -0.6525 2.3286 28 1 -0.3634 0.5030 -0.8961 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3633 0.5246 0.8837 31 1 1.2126 1.9280 1.7570 32 1 1.9029 4.1391 0.1416 33 1 3.3635 3.5956 1.0018 34 1 3.4881 5.5905 2.3778 35 1 2.1227 6.2304 1.4216 36 1 4.7609 4.1723 4.3783 37 1 0.1688 6.9678 2.5619 38 1 0.3850 7.6257 4.1817 39 1 -0.4502 5.6616 5.2303 40 1 -1.5069 5.8760 3.8114 41 1 0.7400 3.8700 4.2353 42 1 -0.9177 3.5806 3.6637 43 1 1.3506 -1.5192 -1.5638 44 1 2.3494 -0.1007 -2.0258 45 1 4.2083 -0.8537 -0.7964 46 1 3.4559 -2.4549 -1.0608 47 1 3.5419 -2.1666 1.4173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150318311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:38 Heat of formation + Delta-G solvation = -84.502091 kcal Electronic energy + Delta-G solvation = -29790.642874 eV Core-core repulsion = 25781.439516 eV Total energy + Delta-G solvation = -4009.203358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 4.27 seconds Orbital eigenvalues (eV) -41.23617 -39.21573 -38.43427 -36.46892 -34.99100 -34.50915 -33.36643 -32.07262 -31.09813 -29.05784 -28.47603 -25.98085 -25.33501 -25.18503 -22.98976 -22.06737 -21.45466 -20.76749 -19.60053 -19.19089 -17.67861 -17.38007 -17.01815 -16.05993 -15.67158 -15.37331 -15.25568 -14.85400 -14.56405 -14.34409 -14.11998 -13.96106 -13.87174 -13.70388 -13.24452 -13.00218 -12.85037 -12.58368 -12.45147 -12.35566 -12.18851 -11.94596 -11.55459 -11.39011 -11.33671 -11.19321 -10.81793 -10.72721 -10.47795 -10.14596 -10.05214 -9.93582 -9.68863 -9.60097 -9.47559 -9.29408 -8.77329 -8.69558 -8.47846 -6.80054 -5.89773 -3.28616 2.27551 2.73325 3.16015 3.35519 3.42073 3.43355 3.46153 4.04176 4.20955 4.45280 4.52925 4.72045 4.82106 4.91181 5.10611 5.25656 5.28462 5.30627 5.48329 5.50778 5.66113 5.74376 5.82953 5.85952 5.93316 5.95563 6.00597 6.16835 6.36417 6.42702 6.48757 6.54625 6.56712 6.70572 6.74095 6.78034 6.83819 6.92471 6.98283 7.14734 7.33709 7.73610 7.76237 8.04927 8.16631 8.34116 8.37672 9.08988 9.77285 10.31666 11.19200 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.003878 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.147905 B = 7217.877902 C = 8029.474994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.120 4.120 3 C 0.530 3.470 4 O -0.541 6.541 5 N -0.702 5.702 6 C 0.120 3.880 7 C 0.060 3.940 8 H 0.108 0.892 9 C 0.144 3.856 10 N -0.587 5.587 11 C -0.251 4.251 12 H 0.069 0.931 13 C 0.003 3.997 14 N -0.906 5.906 15 Si 0.904 3.096 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.284 1.284 19 C 0.161 3.839 20 C -0.171 4.171 21 C 0.067 3.933 22 O -0.369 6.369 23 C -0.117 4.117 24 C 0.100 3.900 25 N -0.729 5.729 26 C 0.531 3.469 27 O -0.514 6.514 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.407 0.593 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.019 0.981 36 H 0.256 0.744 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 -12.581 -10.178 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.127 4.127 3 C 0.313 3.687 4 O -0.419 6.419 5 N -0.351 5.351 6 C -0.004 4.004 7 C 0.001 3.999 8 H 0.125 0.875 9 C 0.019 3.981 10 N -0.307 5.307 11 C -0.380 4.380 12 H 0.087 0.913 13 C -0.195 4.195 14 N -0.552 5.552 15 Si 0.734 3.266 16 H -0.210 1.210 17 H -0.217 1.217 18 H -0.211 1.211 19 C 0.032 3.968 20 C -0.213 4.213 21 C -0.011 4.011 22 O -0.288 6.288 23 C -0.155 4.155 24 C -0.025 4.025 25 N -0.385 5.385 26 C 0.315 3.685 27 O -0.389 6.389 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.242 0.758 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.128 0.872 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.663 -12.193 -10.435 16.712 hybrid contribution 0.843 -0.271 1.494 1.737 sum -3.820 -12.464 -8.940 15.808 Atomic orbital electron populations 1.21663 0.89618 1.03329 1.03911 1.21637 0.99611 0.94576 0.96856 1.19594 0.80546 0.85808 0.82710 1.90668 1.38791 1.76629 1.35822 1.45946 1.52606 1.13243 1.23310 1.21762 0.99113 0.80091 0.99385 1.22201 0.80368 0.99599 0.97747 0.87474 1.20732 1.00866 0.89643 0.86832 1.44095 1.02989 1.69179 1.14465 1.19222 1.02757 1.10927 1.05123 0.91310 1.24901 1.00323 0.94889 0.99373 1.69865 1.27986 1.09310 1.48001 0.86335 0.81928 0.78165 0.80153 1.21008 1.21678 1.21083 1.20369 0.84609 0.94239 0.97567 1.23580 0.99129 0.98279 1.00294 1.22347 0.98621 0.95933 0.84182 1.87496 1.21176 1.94307 1.25799 1.22695 0.96547 0.99252 0.97008 1.22134 0.98979 1.01518 0.79855 1.46132 1.37140 1.44167 1.11053 1.20351 0.79720 0.79557 0.88885 1.90795 1.61076 1.65839 1.21155 0.90781 0.91230 0.90757 0.75800 0.91729 0.90358 0.87873 0.96255 0.93415 0.95043 0.94917 0.92500 0.93188 0.91878 0.93027 0.89307 0.87176 0.90440 0.89936 0.74854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.33 37.15 0.31 -1.03 16 2 C -0.12 -1.47 0.74 -155.67 -0.12 -1.59 16 3 C 0.53 8.47 6.55 -10.99 -0.07 8.39 16 4 O -0.54 -9.77 15.46 5.55 0.09 -9.68 16 5 N -0.70 -12.08 5.29 -60.29 -0.32 -12.40 16 6 C 0.12 2.29 5.24 -4.04 -0.02 2.26 16 7 C 0.06 1.25 1.95 -29.64 -0.06 1.19 16 8 H 0.11 2.58 5.23 -51.93 -0.27 2.31 16 9 C 0.14 3.31 4.71 -4.93 -0.02 3.29 16 10 N -0.59 -14.29 2.61 -174.50 -0.46 -14.75 16 11 C -0.25 -6.64 9.62 -15.06 -0.14 -6.78 16 12 H 0.07 1.81 7.88 -52.48 -0.41 1.40 16 13 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 14 N -0.91 -24.25 9.57 55.49 0.53 -23.72 16 15 Si 0.90 21.19 29.60 -169.99 -5.03 16.16 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.16 3.46 5.32 -4.43 -0.02 3.43 16 20 C -0.17 -3.30 6.75 -24.34 -0.16 -3.46 16 21 C 0.07 1.31 6.38 38.31 0.24 1.56 16 22 O -0.37 -7.46 9.54 -31.93 -0.30 -7.77 16 23 C -0.12 -1.06 6.05 -25.10 -0.15 -1.21 16 24 C 0.10 0.82 7.78 -3.12 -0.02 0.79 16 25 N -0.73 -7.58 6.24 -59.20 -0.37 -7.95 16 26 C 0.53 7.30 7.08 -10.86 -0.08 7.22 16 27 O -0.51 -8.87 17.69 5.56 0.10 -8.77 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 31 H 0.41 7.03 7.66 -40.82 -0.31 6.72 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 34 H 0.10 2.59 6.03 -51.93 -0.31 2.28 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.03 0.66 7.99 -51.93 -0.41 0.24 16 38 H 0.03 0.69 7.96 -51.93 -0.41 0.28 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.41 6.66 -51.93 -0.35 1.06 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 0.58 7.92 -51.93 -0.41 0.16 16 44 H 0.11 1.09 6.91 -51.93 -0.36 0.73 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.41 3.58 8.96 -40.82 -0.37 3.22 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -30.70 369.35 -7.99 -38.69 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -7.38 Total: 10.55 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -0.41 Total: 14.08 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.61 Total: -58.82 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.12 Total: -26.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.70 -7.99 -38.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150318311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.815 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.27 seconds