Wall clock time and date at job start Tue Mar 31 2020 04:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 110.43556 * 2 1 4 4 O 1.21283 * 120.00214 * 241.08893 * 3 2 1 5 5 N 1.34773 * 119.99815 * 61.09465 * 3 2 1 6 6 C 1.46504 * 120.00189 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47352 * 179.97438 * 6 5 3 8 8 H 1.08992 * 108.56700 * 57.94286 * 7 6 5 9 9 C 1.46922 * 108.61839 * 175.75455 * 7 6 5 10 10 N 1.50119 * 106.77410 * 177.92382 * 9 7 6 11 11 C 1.36932 * 120.63177 * 111.32977 * 10 9 7 12 12 H 1.08003 * 119.99740 * 155.72061 * 11 10 9 13 13 C 1.38807 * 120.00512 * 335.71814 * 11 10 9 14 14 N 1.31619 * 120.00001 * 340.61435 * 13 11 10 15 15 Si 1.86805 * 120.00108 * 160.61099 * 13 11 10 16 16 H 1.48494 * 109.47203 * 60.00088 * 15 13 11 17 17 H 1.48500 * 109.47102 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46877 * 299.99874 * 15 13 11 19 19 C 1.43422 * 118.72831 * 291.35143 * 10 9 7 20 20 C 1.55334 * 116.23946 * 89.34909 * 19 10 9 21 21 C 1.55184 * 108.87322 * 319.46332 * 20 19 10 22 22 O 1.39639 * 110.56979 * 322.14391 * 21 20 19 23 23 C 1.54633 * 110.59565 * 237.38562 * 2 1 3 24 24 C 1.54475 * 101.76591 * 216.46618 * 23 2 1 25 25 N 1.46768 * 105.47241 * 25.41662 * 24 23 2 26 26 C 1.34413 * 111.30325 * 342.98147 * 25 24 23 27 27 O 1.21279 * 124.94888 * 180.44014 * 26 25 24 28 28 H 1.08994 * 109.47376 * 60.69443 * 1 2 3 29 29 H 1.09000 * 109.47299 * 180.69937 * 1 2 3 30 30 H 1.09005 * 109.46973 * 300.69564 * 1 2 3 31 31 H 0.96998 * 120.00616 * 359.97438 * 5 3 2 32 32 H 1.08996 * 109.47206 * 59.99356 * 6 5 3 33 33 H 1.09007 * 109.46868 * 299.99493 * 6 5 3 34 34 H 1.09001 * 109.98698 * 297.23739 * 9 7 6 35 35 H 1.09000 * 109.99099 * 58.51381 * 9 7 6 36 36 H 0.96999 * 119.99811 * 179.97438 * 14 13 11 37 37 H 1.08999 * 108.12683 * 327.59682 * 19 10 9 38 38 H 1.09000 * 108.12588 * 211.10812 * 19 10 9 39 39 H 1.09000 * 109.56608 * 79.28027 * 20 19 10 40 40 H 1.08996 * 109.56927 * 199.64135 * 20 19 10 41 41 H 1.09006 * 109.25692 * 82.42659 * 21 20 19 42 42 H 1.09001 * 109.25358 * 201.85969 * 21 20 19 43 43 H 1.08997 * 110.97203 * 334.58771 * 23 2 1 44 44 H 1.09004 * 110.96943 * 98.34682 * 23 2 1 45 45 H 1.09002 * 110.25074 * 266.41718 * 24 23 2 46 46 H 1.09004 * 110.24873 * 144.41734 * 24 23 2 47 47 H 0.96995 * 124.34619 * 163.00600 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0561 1.4121 0.0000 4 8 2.7437 1.8031 -0.9194 5 7 1.7627 2.2405 1.0218 6 6 2.2737 3.6135 1.0216 7 6 1.7980 4.3350 2.2842 8 1 2.1452 3.7777 3.1541 9 6 2.4030 5.6735 2.3157 10 7 1.8701 6.3611 3.5391 11 6 2.6924 6.6358 4.5990 12 1 2.4471 7.4383 5.2790 13 6 3.8412 5.8830 4.7997 14 7 3.9580 4.6982 4.2384 15 14 5.2215 6.5513 5.8664 16 1 4.7110 6.7993 7.2385 17 1 6.3282 5.5626 5.9206 18 1 5.7229 7.8234 5.2872 19 6 0.4832 6.7244 3.5767 20 6 -0.4918 5.6549 4.1411 21 6 -0.0661 4.2591 3.6132 22 8 0.3744 4.3480 2.2911 23 6 2.0739 -0.7802 -1.2193 24 6 3.3232 -1.4656 -0.6228 25 7 3.0582 -1.5787 0.8163 26 6 2.0595 -0.7624 1.1946 27 8 1.6438 -0.6525 2.3286 28 1 -0.3634 0.5030 -0.8961 29 1 -0.3634 -1.0276 0.0125 30 1 -0.3633 0.5246 0.8837 31 1 1.2126 1.9280 1.7570 32 1 1.9029 4.1391 0.1416 33 1 3.3635 3.5956 1.0018 34 1 3.4881 5.5905 2.3778 35 1 2.1227 6.2304 1.4216 36 1 4.7609 4.1723 4.3783 37 1 0.1688 6.9678 2.5619 38 1 0.3850 7.6257 4.1817 39 1 -0.4502 5.6616 5.2303 40 1 -1.5069 5.8760 3.8114 41 1 0.7400 3.8700 4.2353 42 1 -0.9177 3.5806 3.6637 43 1 1.3506 -1.5192 -1.5638 44 1 2.3494 -0.1007 -2.0258 45 1 4.2083 -0.8537 -0.7964 46 1 3.4559 -2.4549 -1.0608 47 1 3.5419 -2.1666 1.4173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150318311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:37 Heat of formation + Delta-G solvation = -107.583615 kcal Electronic energy + Delta-G solvation = -29791.643764 eV Core-core repulsion = 25781.439516 eV Total energy + Delta-G solvation = -4010.204248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.28863 -40.79295 -39.78532 -37.50473 -36.80691 -35.99077 -34.39120 -33.76058 -32.86775 -30.39252 -29.66874 -27.39746 -27.09473 -26.36384 -24.55774 -23.14335 -22.58761 -22.43859 -21.33405 -20.42289 -18.99291 -18.64346 -18.35973 -17.73513 -17.11308 -16.70450 -16.57638 -16.46309 -16.07468 -15.61906 -15.56067 -15.46460 -15.00047 -14.81782 -14.71083 -14.50781 -14.22721 -13.97142 -13.60005 -13.54351 -13.39538 -13.29461 -13.21557 -12.96735 -12.62694 -12.54776 -12.33485 -12.30079 -12.14515 -11.95180 -11.80435 -11.41131 -11.24415 -11.15206 -10.84388 -10.57786 -10.30549 -10.15986 -10.14241 -8.73668 -7.91050 -5.32232 1.15419 1.46607 1.49546 1.53845 1.55212 2.13998 2.35604 2.50912 3.06593 3.15770 3.26011 3.35871 3.48540 3.60701 3.88458 4.08556 4.11618 4.24831 4.34162 4.37947 4.39326 4.52423 4.66271 4.69379 4.72457 4.73582 4.74805 4.76810 4.91567 5.01352 5.05368 5.10157 5.14266 5.15949 5.16740 5.31624 5.35105 5.39255 5.47304 5.65978 5.70093 5.89596 6.33703 6.41366 6.47559 7.03279 7.08855 7.11219 7.81703 8.34488 9.14455 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015090 B = 0.003878 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.147905 B = 7217.877902 C = 8029.474994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 C 0.527 3.473 4 O -0.563 6.563 5 N -0.705 5.705 6 C 0.132 3.868 7 C 0.078 3.922 8 H 0.077 0.923 9 C 0.147 3.853 10 N -0.601 5.601 11 C -0.265 4.265 12 H 0.065 0.935 13 C -0.038 4.038 14 N -0.919 5.919 15 Si 0.961 3.039 16 H -0.280 1.280 17 H -0.296 1.296 18 H -0.282 1.282 19 C 0.154 3.846 20 C -0.163 4.163 21 C 0.068 3.932 22 O -0.365 6.365 23 C -0.111 4.111 24 C 0.096 3.904 25 N -0.718 5.718 26 C 0.521 3.479 27 O -0.559 6.559 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.406 0.594 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.029 0.971 36 H 0.249 0.751 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.030 0.970 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.125 0.875 47 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 -13.902 -11.384 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.124 4.124 3 C 0.312 3.688 4 O -0.443 6.443 5 N -0.354 5.354 6 C 0.008 3.992 7 C 0.019 3.981 8 H 0.095 0.905 9 C 0.022 3.978 10 N -0.323 5.323 11 C -0.395 4.395 12 H 0.083 0.917 13 C -0.234 4.234 14 N -0.565 5.565 15 Si 0.790 3.210 16 H -0.206 1.206 17 H -0.222 1.222 18 H -0.209 1.209 19 C 0.026 3.974 20 C -0.204 4.204 21 C -0.009 4.009 22 O -0.283 6.283 23 C -0.149 4.149 24 C -0.027 4.027 25 N -0.373 5.373 26 C 0.305 3.695 27 O -0.437 6.437 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.242 0.758 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.049 0.951 42 H 0.101 0.899 43 H 0.142 0.858 44 H 0.121 0.879 45 H 0.086 0.914 46 H 0.143 0.857 47 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.665 -13.533 -11.671 18.747 hybrid contribution 1.154 0.158 1.837 2.175 sum -4.511 -13.374 -9.833 17.202 Atomic orbital electron populations 1.21707 0.88152 1.04808 1.03682 1.21698 1.00809 0.91896 0.98000 1.20258 0.79768 0.87101 0.81651 1.90652 1.39654 1.77511 1.36481 1.45937 1.52851 1.12723 1.23928 1.21442 0.98072 0.81342 0.98380 1.21750 0.80722 0.98222 0.97378 0.90528 1.20652 0.99537 0.90792 0.86840 1.44238 1.04164 1.69599 1.14277 1.19407 1.03612 1.10863 1.05633 0.91706 1.25513 1.01936 0.95135 1.00786 1.70026 1.27742 1.09848 1.48868 0.85450 0.79371 0.77306 0.78905 1.20617 1.22192 1.20864 1.20499 0.83747 0.95008 0.98146 1.23493 0.99983 0.96970 0.99972 1.22376 0.98503 0.96819 0.83247 1.87486 1.20354 1.94329 1.26167 1.22804 0.97467 0.99411 0.95190 1.22372 0.98230 1.03705 0.78403 1.46201 1.35741 1.42971 1.12351 1.20659 0.80266 0.79972 0.88573 1.90767 1.62730 1.67406 1.22832 0.89529 0.88874 0.92493 0.75836 0.91314 0.91990 0.90411 0.95289 0.94153 0.94431 0.94874 0.92868 0.90062 0.95148 0.89932 0.85766 0.87873 0.91393 0.85696 0.73934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.33 71.98 0.60 -1.80 16 2 C -0.12 -2.72 0.74 -52.93 -0.04 -2.76 16 3 C 0.53 16.71 6.55 87.66 0.57 17.28 16 4 O -0.56 -20.24 15.46 -3.04 -0.05 -20.28 16 5 N -0.70 -24.67 5.29 -463.05 -2.45 -27.12 16 6 C 0.13 5.16 5.24 86.38 0.45 5.61 16 7 C 0.08 3.37 1.95 28.71 0.06 3.43 16 8 H 0.08 3.85 5.23 -2.39 -0.01 3.84 16 9 C 0.15 6.90 4.71 83.79 0.39 7.29 16 10 N -0.60 -29.66 2.61 -705.99 -1.84 -31.51 16 11 C -0.27 -14.25 9.62 84.03 0.81 -13.44 16 12 H 0.07 3.46 7.88 -2.91 -0.02 3.43 16 13 C -0.04 -2.01 4.92 84.86 0.42 -1.60 16 14 N -0.92 -50.73 9.57 21.65 0.21 -50.53 16 15 Si 0.96 44.23 29.60 68.60 2.03 46.26 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 C 0.15 6.51 5.32 87.75 0.47 6.98 16 20 C -0.16 -6.04 6.75 32.15 0.22 -5.82 16 21 C 0.07 2.63 6.38 72.73 0.46 3.10 16 22 O -0.36 -14.60 9.54 -137.18 -1.31 -15.91 16 23 C -0.11 -1.68 6.05 31.65 0.19 -1.49 16 24 C 0.10 1.31 7.78 86.83 0.68 1.99 16 25 N -0.72 -13.70 6.24 -459.80 -2.87 -16.57 16 26 C 0.52 13.90 7.08 87.90 0.62 14.52 16 27 O -0.56 -19.50 17.69 -3.03 -0.05 -19.55 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.29 7.70 -2.38 -0.02 1.27 16 31 H 0.41 14.39 7.66 -92.71 -0.71 13.68 16 32 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.08 4.06 6.03 -2.39 -0.01 4.05 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 37 H 0.04 1.52 7.99 -2.39 -0.02 1.51 16 38 H 0.03 1.38 7.96 -2.39 -0.02 1.36 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 41 H 0.03 1.38 6.66 -2.38 -0.02 1.36 16 42 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.12 1.04 7.92 -2.39 -0.02 1.02 16 44 H 0.10 1.79 6.91 -2.38 -0.02 1.78 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.42 6.66 8.96 -92.71 -0.83 5.83 16 Total: -1.00 -67.91 369.35 -0.98 -68.89 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.54 Total: 33.02 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 5.90 Total: 33.29 kcal Atomic # 7 Polarization: -118.77 SS G_CDS: -6.95 Total: -125.72 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -1.41 Total: -55.74 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -67.91 -0.98 -68.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150318311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.693 kcal (2) G-P(sol) polarization free energy of solvation -67.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds