Wall clock time and date at job start Tue Mar 31 2020 06:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.53003 * 109.47243 * 119.99246 * 2 1 3 5 5 C 1.50700 * 109.47468 * 184.99917 * 4 2 1 6 6 O 1.21284 * 119.99704 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00024 * 180.02562 * 5 4 2 8 8 C 1.46502 * 119.99966 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47238 * 179.97438 * 8 7 5 10 10 O 1.21298 * 120.00096 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99843 * 179.97438 * 9 8 7 12 12 C 1.37103 * 119.99915 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99975 * 359.97438 * 12 11 9 14 14 C 1.38952 * 120.00056 * 180.02562 * 12 11 9 15 15 N 1.31406 * 119.99805 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99874 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47218 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46905 * 119.99984 * 16 14 12 19 19 H 1.48500 * 109.46901 * 239.99940 * 16 14 12 20 20 N 1.46494 * 109.47305 * 239.99352 * 2 1 3 21 21 C 1.34784 * 119.99635 * 85.00093 * 20 2 1 22 22 O 1.21279 * 119.99925 * 359.97438 * 21 20 2 23 23 C 1.50700 * 119.99961 * 180.02562 * 21 20 2 24 24 C 1.54274 * 110.03139 * 297.90611 * 23 21 20 25 25 C 1.54960 * 104.15934 * 217.13316 * 24 23 21 26 26 C 1.54890 * 102.77769 * 37.89262 * 25 24 23 27 27 C 1.53870 * 110.03530 * 180.69114 * 23 21 20 28 28 H 1.08996 * 109.46997 * 300.00209 * 1 2 3 29 29 H 1.08991 * 109.46933 * 60.00690 * 1 2 3 30 30 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47427 * 305.00598 * 4 2 1 32 32 H 1.09010 * 109.47093 * 65.00446 * 4 2 1 33 33 H 0.97001 * 120.00470 * 359.97438 * 7 5 4 34 34 H 1.08999 * 109.47053 * 300.00011 * 8 7 5 35 35 H 1.08998 * 109.47190 * 59.99761 * 8 7 5 36 36 H 0.96995 * 120.00507 * 0.02562 * 11 9 8 37 37 H 0.97006 * 119.99729 * 180.02562 * 15 14 12 38 38 H 0.96995 * 120.00292 * 265.27526 * 20 2 1 39 39 H 1.08997 * 110.01573 * 59.29300 * 23 21 20 40 40 H 1.08999 * 110.48561 * 335.78565 * 24 23 21 41 41 H 1.09004 * 110.48438 * 98.42226 * 24 23 21 42 42 H 1.08994 * 110.72279 * 279.57290 * 25 24 23 43 43 H 1.09007 * 110.91921 * 156.29317 * 25 24 23 44 44 H 1.09000 * 110.48895 * 203.40575 * 26 25 24 45 45 H 1.08995 * 110.60291 * 80.81173 * 26 25 24 46 46 H 1.08993 * 110.03088 * 238.57172 * 27 23 21 47 47 H 1.09007 * 110.02608 * 359.97438 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7211 1.2494 5 6 3.5420 -0.6148 1.3129 6 8 4.1450 -0.0203 0.4446 7 7 4.2149 -1.1803 2.3345 8 6 5.6750 -1.0764 2.3965 9 6 6.1773 -1.7868 3.6269 10 8 5.3928 -2.3263 4.3785 11 7 7.4982 -1.8226 3.8923 12 6 7.9551 -2.4684 5.0120 13 1 7.2566 -2.9481 5.6817 14 6 9.3169 -2.5049 5.2859 15 7 10.1668 -1.9208 4.4715 16 14 9.9396 -3.3854 6.8112 17 1 8.7896 -3.9568 7.5571 18 1 10.8621 -4.4778 6.4102 19 1 10.6619 -2.4211 7.6792 20 7 2.0184 -0.6907 -1.1960 21 6 2.1471 -0.0184 -2.3571 22 8 1.8582 1.1582 -2.4117 23 6 2.6489 -0.7290 -3.5876 24 6 4.0837 -1.2447 -3.3519 25 6 4.7877 -1.0443 -4.7178 26 6 4.1996 0.3006 -5.2123 27 6 2.7224 0.2527 -4.7702 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -0.2616 2.1370 32 1 1.7517 -1.7715 1.2058 33 1 3.7326 -1.6554 3.0291 34 1 6.1099 -1.5353 1.5086 35 1 5.9630 -0.0261 2.4407 36 1 8.1255 -1.3909 3.2916 37 1 11.1175 -1.9466 4.6625 38 1 2.2453 -1.6328 -1.1534 39 1 1.9889 -1.5609 -3.8333 40 1 4.5779 -0.6571 -2.5783 41 1 4.0698 -2.3002 -3.0801 42 1 4.5348 -1.8523 -5.4042 43 1 5.8679 -0.9704 -4.5917 44 1 4.2708 0.3720 -6.2976 45 1 4.7118 1.1395 -4.7412 46 1 2.0986 -0.1031 -5.5901 47 1 2.3946 1.2431 -4.4541 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343516607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:55 Heat of formation + Delta-G solvation = -138.685051 kcal Electronic energy + Delta-G solvation = -27614.359576 eV Core-core repulsion = 23602.806669 eV Total energy + Delta-G solvation = -4011.552907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43789 -39.53850 -38.23721 -37.30417 -35.70567 -34.46515 -33.69952 -31.97791 -31.42186 -29.34676 -28.85380 -28.65477 -26.94375 -24.50212 -22.94591 -21.20483 -20.80481 -20.21151 -19.72730 -19.50006 -18.16836 -17.55930 -17.16581 -16.50476 -15.88931 -15.64264 -15.43920 -15.26846 -14.97259 -14.61104 -14.37487 -14.14244 -13.88414 -13.81033 -13.52704 -13.42238 -13.12191 -12.54962 -12.41746 -12.24160 -12.09691 -11.81816 -11.78943 -11.67221 -11.48427 -11.26943 -11.25193 -11.17639 -11.15863 -10.90850 -10.66785 -10.44428 -10.36488 -9.75534 -9.70557 -9.68971 -9.10669 -8.83426 -8.68311 -8.14644 -6.55649 -3.97837 2.67021 2.77034 3.07080 3.12980 3.19067 3.24091 3.31888 3.69236 4.07666 4.30803 4.41755 4.50234 4.59480 4.76336 4.83653 4.98963 5.02556 5.12949 5.16122 5.23906 5.28313 5.29162 5.34392 5.39839 5.45900 5.50750 5.51779 5.69357 5.78130 5.83847 5.86941 5.91089 5.94075 6.01258 6.02425 6.04284 6.17132 6.19679 6.47130 6.62873 7.42181 7.46803 7.75489 7.87865 8.24606 8.38292 8.42354 9.00428 9.34793 9.82305 10.61225 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.002402 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.696636 B =11654.999879 C =13060.843159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.158 3.842 3 H 0.096 0.904 4 C -0.151 4.151 5 C 0.505 3.495 6 O -0.538 6.538 7 N -0.709 5.709 8 C 0.110 3.890 9 C 0.427 3.573 10 O -0.598 6.598 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.106 0.894 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.714 5.714 21 C 0.527 3.473 22 O -0.542 6.542 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.118 4.118 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.410 0.590 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.397 0.603 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.391 0.662 -15.359 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 H 0.114 0.886 4 C -0.192 4.192 5 C 0.291 3.709 6 O -0.415 6.415 7 N -0.363 5.363 8 C -0.018 4.018 9 C 0.213 3.787 10 O -0.485 6.485 11 N -0.183 5.183 12 C -0.435 4.435 13 H 0.124 0.876 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.364 5.364 21 C 0.314 3.686 22 O -0.420 6.420 23 C -0.134 4.134 24 C -0.154 4.154 25 C -0.161 4.161 26 C -0.162 4.162 27 C -0.156 4.156 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.230 0.770 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.444 1.597 -15.475 21.921 hybrid contribution 0.773 -0.958 0.892 1.520 sum -14.670 0.639 -14.583 20.695 Atomic orbital electron populations 1.22188 0.94898 1.02180 1.02837 1.20645 0.93229 0.98166 0.82664 0.88581 1.22040 0.93173 1.03622 1.00326 1.20512 0.89768 0.79027 0.81606 1.90734 1.70115 1.42127 1.38535 1.45752 1.07384 1.56297 1.26857 1.20926 0.81019 1.01453 0.98408 1.19754 0.83786 0.86798 0.88386 1.90495 1.55196 1.51467 1.51363 1.41815 1.05138 1.47705 1.23681 1.19777 0.91767 1.30770 1.01150 0.87620 1.25337 0.95732 0.97431 0.99230 1.69621 1.03451 1.43113 1.37208 0.85758 0.78874 0.78839 0.80623 1.19122 1.20577 1.20580 1.45843 1.67501 1.13553 1.09496 1.20452 0.76469 0.87158 0.84552 1.90640 1.50313 1.16087 1.84915 1.21941 0.98565 0.99135 0.93794 1.22384 0.93158 1.01210 0.98631 1.22500 0.99999 0.97438 0.96177 1.22358 0.95583 0.97839 1.00398 1.22149 0.97007 1.00781 0.95642 0.91428 0.91797 0.92385 0.87278 0.88349 0.75197 0.89989 0.89974 0.77047 0.91595 0.76968 0.88826 0.90232 0.91141 0.91494 0.91253 0.91704 0.91441 0.91734 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 2 C 0.16 1.65 2.13 -67.93 -0.15 1.50 16 3 H 0.10 1.31 7.39 -51.93 -0.38 0.93 16 4 C -0.15 -1.40 5.24 -27.88 -0.15 -1.55 16 5 C 0.51 6.97 7.69 -10.99 -0.08 6.89 16 6 O -0.54 -9.19 15.35 5.55 0.09 -9.10 16 7 N -0.71 -10.72 5.53 -61.47 -0.34 -11.06 16 8 C 0.11 1.93 6.15 -5.19 -0.03 1.90 16 9 C 0.43 9.51 7.85 -10.99 -0.09 9.42 16 10 O -0.60 -14.87 15.24 5.54 0.08 -14.78 16 11 N -0.55 -13.36 5.29 -10.96 -0.06 -13.42 16 12 C -0.31 -8.17 9.68 -14.93 -0.14 -8.31 16 13 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 15 N -0.89 -23.61 13.05 55.50 0.72 -22.89 16 16 Si 0.93 20.25 29.55 -169.99 -5.02 15.23 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 N -0.71 -7.44 4.15 -53.81 -0.22 -7.66 16 21 C 0.53 6.50 6.97 -10.98 -0.08 6.43 16 22 O -0.54 -8.66 14.87 5.56 0.08 -8.58 16 23 C -0.11 -1.08 3.29 -90.65 -0.30 -1.38 16 24 C -0.12 -1.11 6.30 -25.03 -0.16 -1.27 16 25 C -0.12 -1.07 6.91 -24.70 -0.17 -1.24 16 26 C -0.12 -1.13 6.83 -25.07 -0.17 -1.30 16 27 C -0.12 -1.15 6.40 -25.61 -0.16 -1.32 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.41 6.06 7.44 -40.82 -0.30 5.76 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 36 H 0.40 9.30 7.90 -40.82 -0.32 8.98 16 37 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.40 3.36 8.59 -40.82 -0.35 3.01 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 1.08 6.39 -51.92 -0.33 0.75 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -32.84 389.81 -7.74 -40.58 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -7.53 Total: 16.47 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -1.42 Total: 9.34 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.10 Total: -55.03 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: 0.25 Total: -32.46 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.84 -7.74 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343516607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.101 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds