Wall clock time and date at job start Tue Mar 31 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.05710 * 2 1 4 4 N 1.47196 * 109.91437 * 238.80386 * 2 1 3 5 5 C 1.34778 * 125.65933 * 59.08124 * 4 2 1 6 6 O 1.21592 * 120.00079 * 359.97438 * 5 4 2 7 7 N 1.34782 * 120.00020 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00030 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46953 * 179.97438 * 8 7 5 10 10 O 1.21294 * 120.00190 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99762 * 179.97438 * 9 8 7 12 12 C 1.37102 * 120.00098 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00026 * 0.02562 * 12 11 9 14 14 C 1.38946 * 120.00372 * 179.97438 * 12 11 9 15 15 N 1.31412 * 120.00207 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00440 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47181 * 59.99628 * 16 14 12 18 18 H 1.48498 * 109.47520 * 179.97438 * 16 14 12 19 19 H 1.48508 * 109.46807 * 300.00166 * 16 14 12 20 20 C 1.47479 * 108.67882 * 239.09894 * 4 2 1 21 21 C 1.55033 * 104.90598 * 24.00498 * 20 4 2 22 22 C 1.53612 * 109.90857 * 121.18145 * 2 1 3 23 23 C 1.52348 * 110.76407 * 216.15114 * 22 2 1 24 24 C 1.53239 * 109.27009 * 178.53825 * 23 22 2 25 25 O 1.42926 * 109.30396 * 303.62290 * 24 23 22 26 26 C 1.42906 * 114.25368 * 61.76080 * 25 24 23 27 27 C 1.52449 * 110.84682 * 339.55861 * 22 2 1 28 28 H 1.09004 * 109.47418 * 298.82107 * 1 2 3 29 29 H 1.09004 * 109.46523 * 58.81821 * 1 2 3 30 30 H 1.08999 * 109.47357 * 178.81189 * 1 2 3 31 31 H 0.97002 * 119.99629 * 359.97438 * 7 5 4 32 32 H 1.09003 * 109.46764 * 299.99388 * 8 7 5 33 33 H 1.09001 * 109.47156 * 59.99356 * 8 7 5 34 34 H 0.96993 * 120.00660 * 0.02562 * 11 9 8 35 35 H 0.96994 * 120.00546 * 180.02562 * 15 14 12 36 36 H 1.09002 * 110.35767 * 142.86453 * 20 4 2 37 37 H 1.08997 * 110.35568 * 265.04173 * 20 4 2 38 38 H 1.09005 * 111.01521 * 205.62450 * 21 20 4 39 39 H 1.09001 * 111.01884 * 81.74596 * 21 20 4 40 40 H 1.09002 * 109.51200 * 58.58719 * 23 22 2 41 41 H 1.08997 * 109.51079 * 298.48921 * 23 22 2 42 42 H 1.09003 * 109.50070 * 63.56405 * 24 23 22 43 43 H 1.08997 * 109.50192 * 183.63344 * 24 23 22 44 44 H 1.09007 * 109.49864 * 58.19211 * 26 25 24 45 45 H 1.08995 * 109.50217 * 178.29654 * 26 25 24 46 46 H 1.08993 * 109.49766 * 61.59310 * 27 22 2 47 47 H 1.08997 * 109.53812 * 301.48094 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 7 2.0314 -0.7168 -1.1838 5 6 1.7700 -0.3951 -2.4663 6 8 1.0637 0.5612 -2.7214 7 7 2.2906 -1.1341 -3.4660 8 6 2.0060 -0.7848 -4.8600 9 6 2.7020 -1.7597 -5.7743 10 8 3.3705 -2.6578 -5.3075 11 7 2.5818 -1.6338 -7.1107 12 6 3.2154 -2.5205 -7.9426 13 1 3.8106 -3.3201 -7.5270 14 6 3.0910 -2.3910 -9.3204 15 7 2.3656 -1.4190 -9.8263 16 14 3.9537 -3.5995 -10.4539 17 1 3.4641 -4.9739 -10.1770 18 1 3.6638 -3.2465 -11.8668 19 1 5.4188 -3.5392 -10.2187 20 6 2.8668 -1.8457 -0.7337 21 6 2.3711 -2.1616 0.7009 22 6 2.0531 -0.7478 1.2357 23 6 3.3185 -0.0890 1.7701 24 6 3.7893 -0.8386 3.0210 25 8 2.7332 -0.8611 3.9838 26 6 1.5541 -1.5395 3.5460 27 6 0.9826 -0.8216 2.3186 28 1 -0.3634 0.4954 0.9004 29 1 -0.3632 0.5321 -0.8793 30 1 -0.3634 -1.0274 -0.0213 31 1 2.8537 -1.8973 -3.2625 32 1 0.9307 -0.8280 -5.0331 33 1 2.3664 0.2238 -5.0627 34 1 2.0475 -0.9155 -7.4841 35 1 2.2784 -1.3288 -10.7881 36 1 2.7208 -2.7084 -1.3838 37 1 3.9178 -1.5571 -0.7184 38 1 3.1563 -2.6351 1.2904 39 1 1.4748 -2.7814 0.6772 40 1 3.1082 0.9496 2.0257 41 1 4.0976 -0.1259 1.0087 42 1 4.0590 -1.8602 2.7530 43 1 4.6570 -0.3322 3.4436 44 1 1.8024 -2.5678 3.2832 45 1 0.8143 -1.5365 4.3464 46 1 0.1216 -1.3737 1.9420 47 1 0.6754 0.1865 2.5968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358312600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:41 Heat of formation + Delta-G solvation = -111.804369 kcal Electronic energy + Delta-G solvation = -28409.981852 eV Core-core repulsion = 24399.594579 eV Total energy + Delta-G solvation = -4010.387273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29305 -39.50808 -38.27821 -37.29023 -34.46677 -33.85359 -33.35090 -32.07579 -31.37988 -30.97209 -29.18252 -27.22654 -25.60757 -24.54198 -23.96270 -23.27714 -22.26462 -19.67592 -19.51105 -18.86880 -18.24916 -17.78515 -16.60490 -16.38409 -16.19597 -15.94938 -15.42446 -15.17170 -15.09472 -14.77561 -14.46524 -14.25561 -14.06721 -13.70653 -13.47950 -13.36000 -13.22053 -13.00240 -12.55369 -12.52405 -12.17769 -12.09890 -11.91963 -11.79062 -11.63098 -11.46897 -11.26527 -11.10854 -10.96695 -10.66559 -10.55009 -10.51278 -10.31787 -9.91338 -9.76536 -9.62954 -8.91207 -8.62817 -8.43979 -8.10222 -6.51454 -3.93659 2.65655 3.13233 3.21068 3.24839 3.38539 3.52869 3.74993 3.93131 4.06810 4.16625 4.22901 4.31265 4.62524 4.67593 4.77617 4.81459 4.89952 4.97065 5.05030 5.12104 5.17048 5.21733 5.28452 5.29660 5.33312 5.41413 5.48101 5.56724 5.61516 5.65998 5.70101 5.82392 5.88293 5.91719 6.00565 6.01831 6.07971 6.18974 6.39396 6.77445 6.84457 7.19456 7.45501 7.91999 8.19152 8.45090 8.80776 9.04307 9.39341 9.87261 10.65379 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.030749 B = 0.002257 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.367005 B =12404.147453 C =12929.070500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.169 3.831 3 H 0.073 0.927 4 N -0.634 5.634 5 C 0.723 3.277 6 O -0.593 6.593 7 N -0.723 5.723 8 C 0.129 3.871 9 C 0.429 3.571 10 O -0.599 6.599 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.098 3.902 21 C -0.125 4.125 22 C -0.068 4.068 23 C -0.142 4.142 24 C 0.061 3.939 25 O -0.384 6.384 26 C 0.060 3.940 27 C -0.139 4.139 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.406 0.594 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.396 0.604 35 H 0.275 0.725 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.333 1.132 24.729 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.091 0.909 4 N -0.374 5.374 5 C 0.425 3.575 6 O -0.472 6.472 7 N -0.381 5.381 8 C 0.000 4.000 9 C 0.215 3.785 10 O -0.485 6.485 11 N -0.184 5.184 12 C -0.435 4.435 13 H 0.122 0.878 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.025 4.025 21 C -0.163 4.163 22 C -0.068 4.068 23 C -0.180 4.180 24 C -0.015 4.015 25 O -0.303 6.303 26 C -0.016 4.016 27 C -0.177 4.177 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.244 0.756 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.448 1.398 24.660 24.742 hybrid contribution 0.345 -0.613 -1.237 1.422 sum -1.103 0.785 23.423 23.463 Atomic orbital electron populations 1.22249 0.94818 1.02234 1.03003 1.21217 0.94500 0.95428 0.82380 0.90862 1.47619 1.53734 1.32322 1.03682 1.15344 0.80431 0.82512 0.79195 1.90890 1.43212 1.30524 1.82539 1.44812 1.54886 1.33844 1.04550 1.20784 1.00609 0.98648 0.79939 1.19754 0.86955 0.88237 0.83598 1.90484 1.45730 1.36916 1.75414 1.41780 1.44262 1.28465 1.03854 1.19672 1.27509 1.09319 0.86981 0.87760 1.25325 0.97180 0.97662 0.97551 1.69604 1.38923 1.31112 1.13839 0.85871 0.79603 0.80090 0.78384 1.19792 1.20848 1.19780 1.22304 0.94950 0.89745 0.95505 1.22885 1.02166 0.96060 0.95208 1.21102 0.95787 0.95701 0.94239 1.22111 0.97208 1.00520 0.98159 1.22650 0.90062 0.99714 0.89123 1.87920 1.24161 1.77597 1.40591 1.22652 0.87337 0.94965 0.96684 1.22212 0.98034 1.02488 0.94988 0.91709 0.90715 0.92595 0.75625 0.90051 0.90038 0.77004 0.91527 0.90481 0.91398 0.89778 0.90198 0.90583 0.90362 0.92899 0.88783 0.93041 0.88853 0.90003 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 7.93 37.16 0.29 -1.48 16 2 C 0.17 1.83 3.04 -67.23 -0.20 1.63 16 3 H 0.07 0.87 7.82 -51.93 -0.41 0.46 16 4 N -0.63 -8.24 3.09 -168.86 -0.52 -8.76 16 5 C 0.72 12.29 8.27 -86.91 -0.72 11.57 16 6 O -0.59 -11.79 15.23 5.28 0.08 -11.71 16 7 N -0.72 -12.67 5.49 -66.41 -0.36 -13.04 16 8 C 0.13 2.45 6.15 -5.20 -0.03 2.41 16 9 C 0.43 9.93 7.85 -10.99 -0.09 9.84 16 10 O -0.60 -15.35 15.24 5.55 0.08 -15.27 16 11 N -0.55 -13.69 5.29 -10.97 -0.06 -13.75 16 12 C -0.31 -8.31 9.68 -14.93 -0.14 -8.45 16 13 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 15 N -0.89 -23.94 13.05 55.50 0.72 -23.22 16 16 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 20 C 0.10 0.99 6.25 -2.43 -0.02 0.97 16 21 C -0.13 -0.94 5.09 -24.89 -0.13 -1.07 16 22 C -0.07 -0.53 0.49 -154.04 -0.08 -0.60 16 23 C -0.14 -1.04 4.77 -26.94 -0.13 -1.17 16 24 C 0.06 0.41 6.65 37.28 0.25 0.66 16 25 O -0.38 -3.26 10.75 -35.23 -0.38 -3.63 16 26 C 0.06 0.39 6.66 37.29 0.25 0.64 16 27 C -0.14 -0.94 3.62 -26.88 -0.10 -1.03 16 28 H 0.06 0.55 6.61 -51.93 -0.34 0.21 16 29 H 0.07 1.04 6.75 -51.93 -0.35 0.69 16 30 H 0.05 0.59 7.55 -51.93 -0.39 0.19 16 31 H 0.41 6.98 5.92 -40.82 -0.24 6.74 16 32 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.40 9.52 7.90 -40.82 -0.32 9.19 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.08 0.81 7.30 -51.93 -0.38 0.43 16 37 H 0.07 0.64 7.71 -51.93 -0.40 0.24 16 38 H 0.08 0.51 6.30 -51.93 -0.33 0.18 16 39 H 0.08 0.59 7.95 -51.93 -0.41 0.18 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.58 7.41 -51.93 -0.38 0.20 16 42 H 0.05 0.32 6.54 -51.93 -0.34 -0.02 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.30 7.59 -51.92 -0.39 -0.09 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.52 6.66 -51.93 -0.35 0.17 16 47 H 0.08 0.54 7.47 -51.93 -0.39 0.15 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -32.09 364.64 -7.95 -40.04 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -7.05 Total: 13.85 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: -0.93 Total: 14.49 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.22 Total: -58.77 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.21 Total: -30.61 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.09 -7.95 -40.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358312600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.769 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds