Wall clock time and date at job start Tue Mar 31 2020 06:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.75190 * 2 1 4 4 C 1.52989 * 109.72073 * 120.64016 * 2 1 3 5 5 N 1.45648 * 110.77629 * 166.39736 * 4 2 1 6 6 C 1.46499 * 117.70622 * 158.09528 * 5 4 2 7 7 C 1.33388 * 124.58534 * 338.07509 * 5 4 2 8 8 O 1.21281 * 118.48456 * 184.33897 * 7 5 4 9 9 C 1.50069 * 123.00933 * 4.16409 * 7 5 4 10 10 N 1.47042 * 109.08800 * 347.58943 * 9 7 5 11 11 C 1.34776 * 121.35463 * 222.68740 * 10 9 7 12 12 O 1.21355 * 120.00047 * 181.86364 * 11 10 9 13 13 C 1.49456 * 120.00059 * 1.86535 * 11 10 9 14 14 O 1.21346 * 119.99903 * 353.82546 * 13 11 10 15 15 N 1.34770 * 119.99813 * 173.82358 * 13 11 10 16 16 C 1.46509 * 119.99805 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46995 * 180.02562 * 16 15 13 18 18 C 1.52995 * 109.47201 * 299.99511 * 17 16 15 19 19 C 1.53001 * 109.47109 * 60.00099 * 17 16 15 20 20 C 1.50701 * 109.46758 * 179.97438 * 17 16 15 21 21 H 1.08005 * 120.00442 * 359.97438 * 20 17 16 22 22 C 1.37875 * 120.00332 * 179.97438 * 20 17 16 23 23 N 1.31520 * 119.99490 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 120.00461 * 179.97438 * 22 20 17 25 25 H 1.48499 * 109.47157 * 60.00229 * 24 22 20 26 26 H 1.48502 * 109.47041 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47127 * 299.99846 * 24 22 20 28 28 H 1.09000 * 109.47037 * 180.63374 * 1 2 3 29 29 H 1.08996 * 109.46658 * 300.63052 * 1 2 3 30 30 H 1.09001 * 109.47115 * 60.63171 * 1 2 3 31 31 H 1.08997 * 109.21328 * 286.73168 * 4 2 1 32 32 H 1.09000 * 109.21870 * 46.06007 * 4 2 1 33 33 H 1.09003 * 109.46650 * 90.00176 * 6 5 4 34 34 H 1.09005 * 109.46785 * 209.99908 * 6 5 4 35 35 H 1.08994 * 109.47207 * 329.99958 * 6 5 4 36 36 H 1.09004 * 109.52929 * 227.67203 * 9 7 5 37 37 H 1.09001 * 109.40942 * 107.43773 * 9 7 5 38 38 H 0.97003 * 120.00537 * 359.97438 * 15 13 11 39 39 H 1.08994 * 109.47138 * 59.99401 * 16 15 13 40 40 H 1.09004 * 109.46866 * 299.99918 * 16 15 13 41 41 H 1.09004 * 109.47033 * 180.02562 * 18 17 16 42 42 H 1.09004 * 109.47310 * 300.00380 * 18 17 16 43 43 H 1.09005 * 109.47012 * 60.00336 * 18 17 16 44 44 H 1.08992 * 109.47026 * 299.99255 * 19 17 16 45 45 H 1.08994 * 109.47041 * 60.00001 * 19 17 16 46 46 H 1.09004 * 109.46929 * 179.97438 * 19 17 16 47 47 H 0.97005 * 119.99851 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0463 -0.7340 1.2391 5 7 3.4666 -1.0298 1.1100 6 6 4.2270 -1.2686 2.3392 7 6 4.1233 -1.0988 -0.0489 8 8 5.2895 -1.4317 -0.0339 9 6 3.4844 -0.7870 -1.3705 10 7 2.0270 -0.7064 -1.1929 11 6 1.1803 -1.2613 -2.0827 12 8 -0.0185 -1.1510 -1.9299 13 6 1.7179 -2.0125 -3.2576 14 8 2.9120 -2.0286 -3.4728 15 7 0.8763 -2.6722 -4.0780 16 6 1.4033 -3.4091 -5.2294 17 6 0.2471 -4.0614 -5.9900 18 6 -0.4934 -5.0267 -5.0623 19 6 -0.7188 -2.9789 -6.4759 20 6 0.7892 -4.8188 -7.1747 21 1 1.8520 -4.8331 -7.3663 22 6 -0.0716 -5.4936 -8.0142 23 7 -1.3659 -5.4758 -7.7812 24 14 0.6002 -6.4319 -9.4831 25 1 1.5389 -7.4819 -9.0125 26 1 -0.5219 -7.0651 -10.2213 27 1 1.3176 -5.4940 -10.3835 28 1 -0.3633 -1.0276 0.0114 29 1 -0.3632 0.5236 0.8843 30 1 -0.3633 0.5040 -0.8956 31 1 1.8884 -0.1089 2.1180 32 1 1.4951 -1.6666 1.3593 33 1 4.2010 -2.3310 2.5818 34 1 5.2606 -0.9543 2.1939 35 1 3.7853 -0.6984 3.1563 36 1 3.7221 -1.5752 -2.0850 37 1 3.8607 0.1675 -1.7386 38 1 -0.0782 -2.6597 -3.9058 39 1 2.0919 -4.1798 -4.8833 40 1 1.9306 -2.7212 -5.8906 41 1 -1.3168 -5.4918 -5.6044 42 1 0.1948 -5.7979 -4.7162 43 1 -0.8855 -4.4785 -4.2057 44 1 -1.1109 -2.4308 -5.6194 45 1 -0.1912 -2.2913 -7.1369 46 1 -1.5423 -3.4436 -7.0182 47 1 -1.9715 -5.9508 -8.3716 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817848153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:35 Heat of formation + Delta-G solvation = -85.802322 kcal Electronic energy + Delta-G solvation = -28960.416482 eV Core-core repulsion = 24951.156742 eV Total energy + Delta-G solvation = -4009.259740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48462 -41.11697 -39.97132 -38.31435 -37.80102 -36.16845 -34.99258 -33.26731 -32.76779 -29.92768 -28.21148 -27.61627 -27.58478 -27.15180 -26.47036 -25.19849 -23.15430 -21.39460 -20.76270 -20.21167 -19.14527 -18.10219 -18.02506 -17.56145 -17.35797 -17.13896 -16.84199 -16.62237 -16.40102 -16.14196 -15.80103 -15.26501 -14.78162 -14.75412 -14.58395 -14.40832 -14.09048 -13.98296 -13.62434 -13.50209 -13.32769 -13.22780 -13.18125 -13.10339 -12.68845 -12.63967 -12.56287 -12.51217 -12.27466 -12.13129 -11.73761 -11.50966 -11.41913 -11.26062 -10.73699 -10.41131 -10.18377 -10.08669 -9.94813 -9.82322 -8.01883 -6.18253 0.26586 1.09579 1.38453 1.45748 1.47201 1.53413 1.85581 2.06480 2.30078 2.48269 3.22157 3.23081 3.26794 3.59098 3.94252 4.04545 4.17691 4.33215 4.33861 4.42959 4.46990 4.53836 4.56560 4.67814 4.70559 4.72330 4.91524 4.95279 5.00213 5.03837 5.05162 5.07789 5.17257 5.27873 5.31366 5.49385 5.53279 5.65043 5.67481 5.74141 6.12103 6.14649 6.19765 6.23461 6.41312 6.63386 6.85054 6.91674 6.92807 7.49855 8.97070 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.002821 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.190211 B = 9924.307901 C =10652.682453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.122 3.878 3 H 0.112 0.888 4 C 0.101 3.899 5 N -0.605 5.605 6 C 0.074 3.926 7 C 0.506 3.494 8 O -0.584 6.584 9 C 0.063 3.937 10 N -0.583 5.583 11 C 0.522 3.478 12 O -0.512 6.512 13 C 0.491 3.509 14 O -0.541 6.541 15 N -0.675 5.675 16 C 0.142 3.858 17 C 0.052 3.948 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.529 4.529 21 H 0.051 0.949 22 C 0.028 3.972 23 N -0.900 5.900 24 Si 0.946 3.054 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.276 1.276 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.155 0.845 37 H 0.122 0.878 38 H 0.415 0.585 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.031 0.969 44 H 0.032 0.968 45 H 0.023 0.977 46 H 0.063 0.937 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 13.038 21.071 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.020 3.980 3 H 0.130 0.870 4 C -0.022 4.022 5 N -0.337 5.337 6 C -0.068 4.068 7 C 0.294 3.706 8 O -0.464 6.464 9 C -0.061 4.061 10 N -0.319 5.319 11 C 0.305 3.695 12 O -0.388 6.388 13 C 0.273 3.727 14 O -0.422 6.422 15 N -0.326 5.326 16 C 0.019 3.981 17 C 0.051 3.949 18 C -0.182 4.182 19 C -0.182 4.182 20 C -0.567 4.567 21 H 0.069 0.931 22 C -0.172 4.172 23 N -0.539 5.539 24 Si 0.773 3.227 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.171 0.829 37 H 0.139 0.861 38 H 0.253 0.747 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.042 0.958 46 H 0.082 0.918 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.250 12.829 20.915 24.751 hybrid contribution 0.049 -0.815 -1.145 1.406 sum 3.299 12.015 19.770 23.368 Atomic orbital electron populations 1.22062 0.90400 1.03437 1.03012 1.22125 0.97543 0.96569 0.81714 0.86973 1.22183 0.78616 1.01785 0.99572 1.47340 1.10872 1.68731 1.06767 1.21905 0.97302 1.02048 0.85564 1.20459 0.86558 0.76991 0.86610 1.90733 1.18706 1.49487 1.87488 1.22932 0.78278 1.08797 0.96083 1.48096 1.06374 1.53641 1.23808 1.19826 0.86326 0.79982 0.83407 1.90837 1.14704 1.58777 1.74495 1.20585 0.86578 0.80866 0.84665 1.90442 1.15613 1.63297 1.72825 1.46063 1.11614 1.48408 1.26554 1.21572 0.97458 0.93962 0.85093 1.18357 0.91125 0.92631 0.92761 1.21707 1.00778 0.98719 0.96950 1.21706 1.00685 0.96959 0.98823 1.21238 0.93298 1.31683 1.10522 0.93122 1.25467 0.95135 0.96913 0.99658 1.69914 1.02455 1.42995 1.38516 0.85802 0.77832 0.78997 0.80087 1.20187 1.21067 1.20135 0.92247 0.89332 0.91940 0.84741 0.90989 0.92730 0.91834 0.87204 0.82853 0.86056 0.74720 0.92770 0.92568 0.91796 0.95930 0.94968 0.94927 0.95806 0.91826 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.57 71.98 0.55 -1.30 16 2 C 0.12 1.65 3.56 44.84 0.16 1.81 16 3 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 4 C 0.10 1.06 5.92 86.54 0.51 1.58 16 5 N -0.61 -10.27 3.20 -851.85 -2.73 -13.00 16 6 C 0.07 0.96 10.19 127.77 1.30 2.26 16 7 C 0.51 12.43 7.57 87.67 0.66 13.09 16 8 O -0.58 -18.98 16.25 -3.03 -0.05 -19.02 16 9 C 0.06 1.49 6.11 85.33 0.52 2.02 16 10 N -0.58 -12.53 2.98 -801.62 -2.39 -14.92 16 11 C 0.52 14.06 7.71 87.27 0.67 14.73 16 12 O -0.51 -14.29 12.03 -3.26 -0.04 -14.33 16 13 C 0.49 15.96 7.81 87.27 0.68 16.64 16 14 O -0.54 -19.40 13.09 -3.23 -0.04 -19.44 16 15 N -0.68 -23.31 4.95 -464.40 -2.30 -25.60 16 16 C 0.14 5.74 4.50 86.38 0.39 6.13 16 17 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 18 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 19 C -0.12 -5.50 8.08 71.98 0.58 -4.92 16 20 C -0.53 -27.32 8.01 25.60 0.21 -27.12 16 21 H 0.05 2.63 7.74 -2.91 -0.02 2.60 16 22 C 0.03 1.46 5.15 84.65 0.44 1.90 16 23 N -0.90 -47.84 9.35 21.45 0.20 -47.64 16 24 Si 0.95 42.10 29.54 68.60 2.03 44.13 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 28 H 0.06 1.09 6.77 -2.39 -0.02 1.07 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.06 1.16 6.81 -2.39 -0.02 1.14 16 31 H 0.13 0.35 7.84 -2.39 -0.02 0.33 16 32 H 0.07 0.85 8.06 -2.39 -0.02 0.83 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 1.07 7.23 -2.38 -0.02 1.06 16 35 H 0.11 0.56 7.80 -2.39 -0.02 0.54 16 36 H 0.16 4.61 4.36 -48.58 -0.21 4.40 16 37 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.41 13.74 5.65 -92.71 -0.52 13.22 16 39 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.06 2.34 8.14 -2.38 -0.02 2.33 16 41 H 0.06 3.17 6.07 -2.38 -0.01 3.16 16 42 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.03 1.23 6.86 -2.38 -0.02 1.22 16 44 H 0.03 1.25 6.86 -2.39 -0.02 1.23 16 45 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 3.15 6.07 -2.38 -0.01 3.14 16 47 H 0.26 13.38 8.31 -92.70 -0.77 12.61 16 Total: -1.00 -64.54 365.07 2.17 -62.37 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.27 Total: 23.22 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: 7.22 Total: 24.24 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -7.22 Total: -101.15 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -0.13 Total: -52.80 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -64.54 2.17 -62.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817848153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.433 kcal (2) G-P(sol) polarization free energy of solvation -64.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds