Wall clock time and date at job start Tue Mar 31 2020 06:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 110.57072 * 2 1 4 4 C 1.54483 * 110.51024 * 237.32091 * 2 1 3 5 5 O 1.44427 * 104.80343 * 265.33563 * 4 2 1 6 6 C 1.44421 * 105.27504 * 319.48465 * 5 4 2 7 7 C 1.54483 * 104.80476 * 40.51341 * 6 5 4 8 8 H 1.08997 * 110.62922 * 217.31814 * 7 6 5 9 9 N 1.46498 * 110.50788 * 94.66366 * 7 6 5 10 10 C 1.34775 * 120.00125 * 90.36229 * 9 7 6 11 11 O 1.21354 * 119.99975 * 359.97438 * 10 9 7 12 12 C 1.49450 * 120.00290 * 179.97438 * 10 9 7 13 13 O 1.21347 * 119.99816 * 353.42382 * 12 10 9 14 14 N 1.34776 * 120.00328 * 173.41485 * 12 10 9 15 15 C 1.47077 * 120.88456 * 173.06365 * 14 12 10 16 16 C 1.53238 * 108.52268 * 128.79217 * 15 14 12 17 17 N 1.46897 * 109.33775 * 53.83219 * 16 15 14 18 18 C 1.46902 * 110.99910 * 172.74592 * 17 16 15 19 19 C 1.50701 * 109.46977 * 74.49197 * 18 17 16 20 20 H 1.07993 * 120.00188 * 4.89382 * 19 18 17 21 21 C 1.37879 * 119.99550 * 184.89169 * 19 18 17 22 22 N 1.31514 * 120.00161 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99741 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47348 * 59.99964 * 23 21 19 25 25 H 1.48503 * 109.47188 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46971 * 299.99878 * 23 21 19 27 27 C 1.46903 * 111.27014 * 296.89239 * 17 16 15 28 28 C 1.47082 * 120.87798 * 353.03932 * 14 12 10 29 29 H 1.09007 * 109.46616 * 297.31673 * 1 2 3 30 30 H 1.08996 * 109.47060 * 57.31440 * 1 2 3 31 31 H 1.08997 * 109.47041 * 177.32030 * 1 2 3 32 32 H 1.08997 * 110.37053 * 24.16739 * 4 2 1 33 33 H 1.09007 * 110.37084 * 146.39290 * 4 2 1 34 34 H 1.09002 * 110.37326 * 281.68116 * 6 5 4 35 35 H 1.08996 * 110.37197 * 159.34219 * 6 5 4 36 36 H 0.97006 * 119.99923 * 270.35468 * 9 7 6 37 37 H 1.09003 * 109.62771 * 9.08077 * 15 14 12 38 38 H 1.09000 * 109.78918 * 248.60099 * 15 14 12 39 39 H 1.08997 * 109.48958 * 173.78835 * 16 15 14 40 40 H 1.08990 * 109.49357 * 293.87110 * 16 15 14 41 41 H 1.08997 * 109.46971 * 194.49328 * 18 17 16 42 42 H 1.09005 * 109.46884 * 314.49040 * 18 17 16 43 43 H 0.97001 * 119.99902 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.49052 * 303.14594 * 27 17 16 45 45 H 1.08999 * 109.49366 * 183.06646 * 27 17 16 46 46 H 1.08995 * 109.62957 * 350.91744 * 28 14 12 47 47 H 1.09002 * 109.62748 * 111.49743 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0204 0.0000 4 6 2.0712 -0.7812 -1.2179 5 8 2.3069 -2.1178 -0.7239 6 6 2.8757 -1.9423 0.5920 7 6 2.0714 -0.7814 1.2181 8 1 2.7201 -0.1465 1.8215 9 7 0.9662 -1.3006 2.0274 10 6 1.1521 -1.5552 3.3378 11 8 2.2352 -1.3547 3.8471 12 6 0.0245 -2.0843 4.1636 13 8 -1.0878 -2.1723 3.6864 14 7 0.2429 -2.4640 5.4382 15 6 -0.8753 -2.8437 6.3150 16 6 -0.5589 -4.2039 6.9459 17 7 0.7530 -4.1415 7.6040 18 6 1.0182 -5.3686 8.3667 19 6 1.3530 -6.4887 7.4157 20 1 1.4450 -6.2898 6.3582 21 6 1.5420 -7.7673 7.8958 22 7 1.4295 -8.0095 9.1835 23 14 1.9577 -9.1555 6.7170 24 1 3.2286 -8.8446 6.0146 25 1 2.1089 -10.4220 7.4775 26 1 0.8655 -9.3036 5.7219 27 6 1.8246 -3.8832 6.6330 28 6 1.6058 -2.5100 5.9891 29 1 -0.3633 0.4716 0.9132 30 1 -0.3633 0.5549 -0.8649 31 1 -0.3633 -1.0265 -0.0480 32 1 1.3310 -0.7974 -2.0178 33 1 3.0013 -0.3360 -1.5714 34 1 3.9301 -1.6764 0.5172 35 1 2.7534 -2.8503 1.1824 36 1 0.1005 -1.4611 1.6202 37 1 -1.7916 -2.9161 5.7292 38 1 -0.9999 -2.0966 7.0987 39 1 -1.3239 -4.4499 7.6823 40 1 -0.5406 -4.9693 6.1702 41 1 1.8574 -5.2024 9.0422 42 1 0.1336 -5.6353 8.9451 43 1 1.5628 -8.9090 9.5212 44 1 1.8097 -4.6531 5.8616 45 1 2.7881 -3.8968 7.1424 46 1 2.3298 -2.3617 5.1880 47 1 1.7232 -1.7300 6.7415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932091042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:47 Heat of formation + Delta-G solvation = -79.441414 kcal Electronic energy + Delta-G solvation = -28809.381129 eV Core-core repulsion = 24800.397218 eV Total energy + Delta-G solvation = -4008.983910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18089 -40.02973 -38.49853 -37.59504 -35.46606 -34.36055 -32.73212 -32.30518 -30.74027 -29.55950 -28.33023 -26.88890 -25.88452 -24.52355 -23.24901 -22.81740 -21.94255 -20.75380 -20.39075 -19.41558 -17.82717 -17.31822 -16.73038 -16.55568 -16.19223 -16.05390 -15.65195 -15.29234 -14.82094 -14.56099 -14.44583 -14.26479 -14.19850 -13.75703 -13.60866 -13.50553 -13.37351 -12.75939 -12.70540 -12.41700 -12.10717 -11.85799 -11.65881 -11.63715 -11.45600 -11.30330 -11.14597 -11.01349 -10.90832 -10.70743 -10.60430 -10.31882 -10.26875 -9.92187 -9.64822 -9.45052 -9.08671 -8.56891 -8.45847 -7.25629 -6.06796 -4.16251 1.37357 2.25507 3.15527 3.26977 3.31946 3.34691 3.45085 3.55829 3.92243 4.27581 4.33621 4.37888 4.39014 4.61422 4.86980 4.90852 4.95754 5.12014 5.19263 5.23823 5.24011 5.39157 5.40216 5.43715 5.51290 5.52800 5.62742 5.72406 5.78829 5.85287 5.92961 6.01696 6.27598 6.36428 6.46029 6.57375 6.60974 6.71404 6.91537 7.19542 7.36740 7.48568 7.65708 7.85454 7.94573 7.98746 8.15883 8.26785 8.93462 9.51344 10.98538 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.003087 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.301052 B = 9068.105469 C =10060.861150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 H 0.097 0.903 4 C 0.046 3.954 5 O -0.370 6.370 6 C 0.033 3.967 7 C 0.112 3.888 8 H 0.111 0.889 9 N -0.694 5.694 10 C 0.511 3.489 11 O -0.508 6.508 12 C 0.503 3.497 13 O -0.535 6.535 14 N -0.568 5.568 15 C 0.111 3.889 16 C 0.049 3.951 17 N -0.542 5.542 18 C 0.188 3.812 19 C -0.554 4.554 20 H 0.058 0.942 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.889 3.111 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.050 3.950 28 C 0.073 3.927 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.416 0.584 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.263 0.737 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.131 0.869 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 18.180 -17.476 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 H 0.115 0.885 4 C -0.031 4.031 5 O -0.288 6.288 6 C -0.044 4.044 7 C 0.007 3.993 8 H 0.129 0.871 9 N -0.351 5.351 10 C 0.293 3.707 11 O -0.384 6.384 12 C 0.285 3.715 13 O -0.413 6.413 14 N -0.300 5.300 15 C -0.011 4.011 16 C -0.080 4.080 17 N -0.266 5.266 18 C 0.062 3.938 19 C -0.593 4.593 20 H 0.076 0.924 21 C -0.136 4.136 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.203 1.203 27 C -0.080 4.080 28 C -0.048 4.048 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.256 0.744 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.148 0.852 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.046 18.310 -16.965 24.961 hybrid contribution -0.028 -1.557 -1.067 1.888 sum 0.018 16.752 -18.033 24.613 Atomic orbital electron populations 1.21812 0.93529 1.02669 1.02934 1.22838 0.97872 1.00462 0.94061 0.88457 1.23553 1.00384 0.83013 0.96155 1.89195 1.83101 1.25610 1.30921 1.23934 0.96979 0.99483 0.84048 1.22473 0.88886 0.95525 0.92404 0.87079 1.46047 1.15954 1.64738 1.08322 1.20403 0.88649 0.78697 0.82971 1.90536 1.26561 1.50532 1.70818 1.19868 0.88436 0.80204 0.83008 1.90726 1.24434 1.55067 1.71102 1.48106 1.10244 1.61762 1.09905 1.22010 0.88885 0.97650 0.92521 1.22253 0.93724 0.94020 0.98002 1.62529 1.00451 1.39428 1.24221 1.19765 0.97464 0.83648 0.92893 1.21748 1.49170 0.94035 0.94382 0.92415 1.24955 0.94987 0.98699 0.95000 1.69929 1.49115 1.21448 1.12352 0.86709 0.79041 0.81529 0.81083 1.20174 1.21120 1.20294 1.22315 0.96310 0.94016 0.95319 1.23102 0.82196 0.98757 1.00741 0.91499 0.91457 0.91675 0.88601 0.91787 0.90744 0.88327 0.74380 0.89233 0.90580 0.90140 0.94073 0.95072 0.94836 0.92690 0.93795 0.90029 0.85178 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 7.79 37.16 0.29 -0.63 16 2 C -0.13 -0.81 3.72 -89.05 -0.33 -1.14 16 3 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 4 C 0.05 0.30 7.18 37.94 0.27 0.57 16 5 O -0.37 -3.72 11.65 -35.23 -0.41 -4.13 16 6 C 0.03 0.31 7.35 37.94 0.28 0.59 16 7 C 0.11 0.95 3.46 -66.36 -0.23 0.72 16 8 H 0.11 0.93 7.55 -51.93 -0.39 0.54 16 9 N -0.69 -7.31 4.54 -52.71 -0.24 -7.55 16 10 C 0.51 6.85 7.75 -11.59 -0.09 6.76 16 11 O -0.51 -7.35 12.82 5.49 0.07 -7.28 16 12 C 0.50 7.82 7.75 -11.59 -0.09 7.73 16 13 O -0.54 -9.00 15.95 5.50 0.09 -8.91 16 14 N -0.57 -9.18 3.01 -172.97 -0.52 -9.70 16 15 C 0.11 1.77 6.61 -3.60 -0.02 1.75 16 16 C 0.05 0.94 5.37 -3.70 -0.02 0.92 16 17 N -0.54 -11.34 4.83 -235.77 -1.14 -12.48 16 18 C 0.19 4.74 5.21 -4.97 -0.03 4.71 16 19 C -0.55 -15.09 7.94 -34.44 -0.27 -15.37 16 20 H 0.06 1.57 5.86 -52.49 -0.31 1.26 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 23 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C 0.05 0.96 4.97 -3.70 -0.02 0.94 16 28 C 0.07 1.18 6.14 -3.60 -0.02 1.16 16 29 H 0.07 0.44 7.78 -51.92 -0.40 0.04 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.46 7.00 -51.93 -0.36 0.09 16 32 H 0.10 0.52 7.87 -51.93 -0.41 0.11 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 1.06 8.06 -51.93 -0.42 0.64 16 36 H 0.42 4.22 5.46 -40.82 -0.22 4.00 16 37 H 0.09 1.38 7.04 -51.93 -0.37 1.02 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.48 7.94 -51.93 -0.41 1.07 16 40 H 0.04 0.88 7.78 -51.93 -0.40 0.47 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.03 0.90 7.88 -51.93 -0.41 0.49 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 45 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 46 H 0.13 2.06 4.37 -54.58 -0.24 1.82 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 367.87 15.07 5.54 5.54 Total: -1.00 -31.24 367.87 -8.46 -39.70 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.18 Total: 3.14 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -0.38 Total: 10.47 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -1.16 Total: -54.98 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.25 Total: -20.32 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.24 -8.46 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932091042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.745 kcal (2) G-P(sol) polarization free energy of solvation -31.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds