Wall clock time and date at job start Tue Mar 31 2020 06:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.83412 * 2 1 4 4 C 1.54992 * 110.90837 * 123.65369 * 2 1 3 5 5 O 1.44387 * 103.49126 * 155.21723 * 4 2 1 6 6 C 1.43742 * 106.97340 * 319.94008 * 5 4 2 7 7 C 1.54095 * 107.29666 * 26.51353 * 6 5 4 8 8 H 1.09003 * 110.48646 * 239.16187 * 7 6 5 9 9 N 1.46494 * 110.48980 * 116.64976 * 7 6 5 10 10 C 1.34777 * 120.00472 * 86.45379 * 9 7 6 11 11 O 1.21346 * 119.99720 * 359.97438 * 10 9 7 12 12 C 1.49449 * 120.00048 * 180.02562 * 10 9 7 13 13 O 1.21349 * 120.00334 * 353.35585 * 12 10 9 14 14 N 1.34782 * 119.99689 * 173.35710 * 12 10 9 15 15 C 1.47077 * 120.87926 * 181.21752 * 14 12 10 16 16 C 1.53696 * 108.27465 * 128.75469 * 15 14 12 17 17 N 1.46896 * 109.25780 * 54.08222 * 16 15 14 18 18 C 1.46903 * 111.00299 * 172.60861 * 17 16 15 19 19 C 1.50694 * 109.47243 * 59.86289 * 18 17 16 20 20 H 1.08003 * 119.99901 * 355.57106 * 19 18 17 21 21 C 1.37875 * 120.00256 * 175.56522 * 19 18 17 22 22 N 1.31517 * 120.00137 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99922 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47087 * 89.99403 * 23 21 19 25 25 H 1.48493 * 109.47048 * 210.00031 * 23 21 19 26 26 H 1.48503 * 109.46764 * 329.99751 * 23 21 19 27 27 C 1.46904 * 111.27037 * 296.75658 * 17 16 15 28 28 C 1.47078 * 120.88010 * 1.49575 * 14 12 10 29 29 H 1.08999 * 109.47425 * 183.64490 * 1 2 3 30 30 H 1.09002 * 109.46820 * 303.64525 * 1 2 3 31 31 H 1.08999 * 109.47277 * 63.64062 * 1 2 3 32 32 H 1.09000 * 110.62136 * 36.71579 * 4 2 1 33 33 H 1.09004 * 110.75087 * 273.78145 * 4 2 1 34 34 H 1.08999 * 109.87659 * 267.08837 * 6 5 4 35 35 H 1.09001 * 110.00352 * 146.00526 * 6 5 4 36 36 H 0.97007 * 119.99539 * 266.45263 * 9 7 6 37 37 H 1.08994 * 109.63212 * 248.52257 * 15 14 12 38 38 H 1.09007 * 109.62638 * 9.10595 * 15 14 12 39 39 H 1.09004 * 109.64654 * 294.08130 * 16 15 14 40 40 H 1.09001 * 109.44307 * 173.96117 * 16 15 14 41 41 H 1.08996 * 109.47035 * 179.86968 * 18 17 16 42 42 H 1.09000 * 109.46542 * 299.86642 * 18 17 16 43 43 H 0.96999 * 119.99564 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.49240 * 303.14212 * 27 17 16 45 45 H 1.08997 * 109.51494 * 183.07484 * 27 17 16 46 46 H 1.08994 * 109.63094 * 350.90287 * 28 14 12 47 47 H 1.09003 * 109.62850 * 111.48204 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8024 1.2052 5 8 3.3941 -1.2145 0.7623 6 6 3.2717 -1.5883 -0.6203 7 6 2.0824 -0.8012 -1.2040 8 1 1.3255 -1.4842 -1.5899 9 7 2.5372 0.1073 -2.2594 10 6 2.6490 -0.3350 -3.5276 11 8 2.3732 -1.4861 -3.7951 12 6 3.1135 0.5918 -4.6040 13 8 3.2744 1.7700 -4.3626 14 7 3.3537 0.1188 -5.8431 15 6 3.8369 1.0084 -6.9101 16 6 5.0803 0.3669 -7.5462 17 7 4.7540 -0.9990 -7.9772 18 6 5.8591 -1.5864 -8.7464 19 6 7.0991 -1.6300 -7.8912 20 1 7.0892 -1.1939 -6.9031 21 6 8.2461 -2.2267 -8.3698 22 7 9.3284 -2.2643 -7.6235 23 14 8.2634 -2.9806 -10.0789 24 1 8.6815 -1.9550 -11.0680 25 1 9.2195 -4.1164 -10.1092 26 1 6.9029 -3.4696 -10.4179 27 6 4.3994 -1.8486 -6.8325 28 6 3.1339 -1.2992 -6.1656 29 1 -0.3634 -1.0256 0.0653 30 1 -0.3633 0.5694 0.8555 31 1 -0.3634 0.4563 -0.9208 32 1 1.4562 -1.6705 1.4087 33 1 2.1581 -0.1690 2.0891 34 1 3.0824 -2.6588 -0.6994 35 1 4.1848 -1.3327 -1.1579 36 1 2.7580 1.0273 -2.0454 37 1 3.0591 1.1325 -7.6635 38 1 4.0992 1.9783 -6.4873 39 1 5.8897 0.3345 -6.8168 40 1 5.3914 0.9560 -8.4089 41 1 5.5921 -2.5983 -9.0511 42 1 6.0492 -0.9788 -9.6312 43 1 10.1355 -2.6838 -7.9605 44 1 5.2182 -1.8502 -6.1132 45 1 4.2162 -2.8663 -7.1774 46 1 2.9311 -1.8557 -5.2506 47 1 2.2898 -1.3927 -6.8490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932091044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:55 Heat of formation + Delta-G solvation = -106.494804 kcal Electronic energy + Delta-G solvation = -28626.712535 eV Core-core repulsion = 24616.555502 eV Total energy + Delta-G solvation = -4010.157033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22278 -40.88370 -39.69335 -39.07449 -36.56528 -35.68346 -34.36152 -33.80832 -32.15321 -30.60436 -30.07610 -27.72495 -27.16926 -25.85443 -24.64728 -23.86727 -23.03090 -21.99344 -21.72005 -20.60192 -19.13082 -18.59919 -18.39497 -17.76745 -17.29031 -16.81998 -16.77447 -16.49528 -16.34056 -16.10093 -15.92727 -15.54286 -15.44930 -15.04611 -14.85401 -14.45404 -14.24142 -14.16529 -14.00180 -13.86591 -13.41340 -13.16166 -13.07957 -12.91881 -12.80135 -12.49237 -12.40293 -12.26617 -12.12359 -11.96533 -11.95182 -11.83946 -11.75352 -11.67535 -10.91546 -10.82146 -10.34245 -10.25463 -9.93109 -9.08040 -8.33745 -6.40317 0.20063 1.13278 1.35973 1.37482 1.49179 1.98976 2.29879 2.32600 2.88391 3.01357 3.11821 3.23795 3.30721 3.69004 3.83048 3.93885 3.98081 4.04636 4.20438 4.25425 4.32282 4.40012 4.46727 4.51174 4.59844 4.66780 4.69899 4.75119 4.80444 4.85664 4.94365 4.95871 5.02125 5.05461 5.09168 5.14781 5.20921 5.30015 5.39108 5.46302 5.73467 5.86932 6.00441 6.15280 6.27610 6.30153 6.56598 6.66332 6.79317 7.27068 8.82787 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.002842 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.762990 B = 9848.466046 C =10634.821662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 H 0.100 0.900 4 C 0.046 3.954 5 O -0.397 6.397 6 C 0.034 3.966 7 C 0.113 3.887 8 H 0.114 0.886 9 N -0.678 5.678 10 C 0.517 3.483 11 O -0.517 6.517 12 C 0.501 3.499 13 O -0.548 6.548 14 N -0.576 5.576 15 C 0.120 3.880 16 C 0.051 3.949 17 N -0.525 5.525 18 C 0.159 3.841 19 C -0.553 4.553 20 H 0.027 0.973 21 C 0.009 3.991 22 N -0.950 5.950 23 Si 0.954 3.046 24 H -0.266 1.266 25 H -0.287 1.287 26 H -0.240 1.240 27 C 0.051 3.949 28 C 0.071 3.929 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.420 0.580 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.007 0.993 40 H 0.089 0.911 41 H 0.038 0.962 42 H 0.035 0.965 43 H 0.266 0.734 44 H 0.005 0.995 45 H 0.086 0.914 46 H 0.153 0.847 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.659 4.322 13.592 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 H 0.118 0.882 4 C -0.030 4.030 5 O -0.316 6.316 6 C -0.044 4.044 7 C 0.009 3.991 8 H 0.132 0.868 9 N -0.331 5.331 10 C 0.298 3.702 11 O -0.395 6.395 12 C 0.283 3.717 13 O -0.428 6.428 14 N -0.308 5.308 15 C -0.002 4.002 16 C -0.078 4.078 17 N -0.248 5.248 18 C 0.031 3.969 19 C -0.591 4.591 20 H 0.046 0.954 21 C -0.189 4.189 22 N -0.590 5.590 23 Si 0.777 3.223 24 H -0.191 1.191 25 H -0.213 1.213 26 H -0.164 1.164 27 C -0.078 4.078 28 C -0.050 4.050 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.258 0.742 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.026 0.974 40 H 0.107 0.893 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.105 0.895 46 H 0.170 0.830 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.833 4.091 13.357 25.920 hybrid contribution 1.896 -0.031 -0.239 1.911 sum -19.938 4.060 13.118 24.209 Atomic orbital electron populations 1.21725 0.91397 1.03328 1.03210 1.23015 0.98515 1.00398 0.92350 0.88230 1.23892 0.83110 0.98632 0.97328 1.88914 1.31075 1.86664 1.24942 1.23613 0.98675 0.99504 0.82595 1.22752 0.96411 0.92325 0.87630 0.86828 1.45823 1.65169 1.16252 1.05828 1.20048 0.78498 0.87281 0.84338 1.90359 1.49510 1.18932 1.80672 1.20188 0.79609 0.88022 0.83851 1.90718 1.53213 1.17178 1.81646 1.48218 1.61539 1.11968 1.09046 1.22039 0.96207 0.93149 0.88758 1.22356 0.95159 0.91080 0.99178 1.62501 1.38276 1.02108 1.21960 1.20113 0.87275 0.95808 0.93674 1.21902 0.97410 1.37629 1.02190 0.95444 1.25993 0.94742 0.95934 1.02245 1.70099 1.03090 1.46052 1.39771 0.85616 0.79459 0.78373 0.78899 1.19080 1.21265 1.16362 1.22311 0.95807 0.97740 0.91948 1.23361 0.96927 0.79537 1.05150 0.91342 0.90134 0.92298 0.90171 0.86757 0.90595 0.91146 0.74191 0.88056 0.88774 0.97413 0.89258 0.94411 0.94678 0.92519 0.97618 0.89549 0.83045 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.19 71.98 0.66 -0.34 16 2 C -0.12 -1.31 3.44 -9.49 -0.03 -1.35 16 3 H 0.10 1.00 7.75 -2.39 -0.02 0.98 16 4 C 0.05 0.53 7.17 72.66 0.52 1.06 16 5 O -0.40 -8.03 11.52 -148.98 -1.72 -9.75 16 6 C 0.03 0.68 7.50 72.35 0.54 1.22 16 7 C 0.11 1.83 2.93 45.98 0.13 1.97 16 8 H 0.11 1.82 7.39 -2.39 -0.02 1.80 16 9 N -0.68 -13.43 5.04 -439.19 -2.21 -15.64 16 10 C 0.52 13.43 7.80 87.27 0.68 14.11 16 11 O -0.52 -14.52 12.74 -3.24 -0.04 -14.56 16 12 C 0.50 15.18 7.77 87.27 0.68 15.86 16 13 O -0.55 -17.98 15.95 -3.24 -0.05 -18.03 16 14 N -0.58 -18.05 3.00 -818.63 -2.46 -20.51 16 15 C 0.12 3.69 6.62 86.50 0.57 4.26 16 16 C 0.05 1.96 5.18 86.54 0.45 2.41 16 17 N -0.53 -21.04 4.83 -898.89 -4.34 -25.38 16 18 C 0.16 7.35 4.20 85.55 0.36 7.71 16 19 C -0.55 -31.34 8.32 25.60 0.21 -31.13 16 20 H 0.03 1.77 6.12 -2.91 -0.02 1.75 16 21 C 0.01 0.51 5.47 84.65 0.46 0.97 16 22 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 23 Si 0.95 43.41 27.56 68.60 1.89 45.30 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 26 H -0.24 -10.00 6.42 99.48 0.64 -9.36 16 27 C 0.05 1.95 5.24 86.38 0.45 2.40 16 28 C 0.07 2.17 6.35 86.35 0.55 2.72 16 29 H 0.07 0.43 8.09 -2.39 -0.02 0.41 16 30 H 0.08 0.36 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.71 8.01 -2.39 -0.02 0.69 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.69 7.93 -2.39 -0.02 1.67 16 36 H 0.42 7.54 7.84 -92.70 -0.73 6.81 16 37 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.09 2.84 7.07 -2.38 -0.02 2.82 16 39 H 0.01 0.35 6.65 -2.38 -0.02 0.34 16 40 H 0.09 3.21 8.11 -2.39 -0.02 3.19 16 41 H 0.04 1.72 6.82 -2.39 -0.02 1.71 16 42 H 0.04 1.58 7.79 -2.39 -0.02 1.56 16 43 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 44 H 0.01 0.25 7.07 -2.39 -0.02 0.24 16 45 H 0.09 3.14 8.06 -2.39 -0.02 3.12 16 46 H 0.15 4.63 3.92 -75.13 -0.29 4.33 16 47 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -71.72 368.18 -2.48 -74.20 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: -0.09 Total: 21.92 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 6.24 Total: 21.87 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -8.71 Total: -120.95 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.81 Total: -42.34 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.89 Total: 45.30 kcal Total: -71.72 -2.48 -74.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932091044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.298 kcal (2) G-P(sol) polarization free energy of solvation -71.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds