Wall clock time and date at job start Tue Mar 31 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.80888 * 2 1 4 4 C 1.55005 * 110.90469 * 236.37511 * 2 1 3 5 5 O 1.44380 * 103.49264 * 204.74430 * 4 2 1 6 6 C 1.43750 * 106.97116 * 40.06090 * 5 4 2 7 7 C 1.54186 * 107.30362 * 333.48934 * 6 5 4 8 8 H 1.09010 * 110.50198 * 120.68480 * 7 6 5 9 9 N 1.46500 * 110.51937 * 243.35687 * 7 6 5 10 10 C 1.34774 * 119.99967 * 269.73634 * 9 7 6 11 11 O 1.21351 * 120.00306 * 359.97438 * 10 9 7 12 12 C 1.49450 * 120.00260 * 179.97438 * 10 9 7 13 13 O 1.21355 * 119.99785 * 353.35193 * 12 10 9 14 14 N 1.34776 * 120.00512 * 173.35407 * 12 10 9 15 15 C 1.47086 * 120.88154 * 181.21982 * 14 12 10 16 16 C 1.53695 * 108.27368 * 128.75673 * 15 14 12 17 17 N 1.46894 * 109.25766 * 54.08423 * 16 15 14 18 18 C 1.46900 * 110.99855 * 172.60690 * 17 16 15 19 19 C 1.50709 * 109.47119 * 59.76781 * 18 17 16 20 20 H 1.07997 * 120.00050 * 355.26013 * 19 18 17 21 21 C 1.37878 * 119.99706 * 175.26158 * 19 18 17 22 22 N 1.31513 * 120.00200 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99557 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47596 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46872 * 120.00400 * 23 21 19 26 26 H 1.48503 * 109.47153 * 240.00059 * 23 21 19 27 27 C 1.46898 * 111.26844 * 296.75142 * 17 16 15 28 28 C 1.47078 * 120.88038 * 1.49697 * 14 12 10 29 29 H 1.08998 * 109.47182 * 179.29459 * 1 2 3 30 30 H 1.09004 * 109.46558 * 299.29384 * 1 2 3 31 31 H 1.08996 * 109.46708 * 59.29143 * 1 2 3 32 32 H 1.08996 * 110.61861 * 323.25040 * 4 2 1 33 33 H 1.09001 * 110.61599 * 86.08563 * 4 2 1 34 34 H 1.09002 * 109.87500 * 92.91688 * 6 5 4 35 35 H 1.09003 * 109.87302 * 213.90972 * 6 5 4 36 36 H 0.96994 * 120.00065 * 89.73038 * 9 7 6 37 37 H 1.08999 * 109.62200 * 248.52474 * 15 14 12 38 38 H 1.08999 * 109.62836 * 9.10321 * 15 14 12 39 39 H 1.08993 * 109.64617 * 294.07452 * 16 15 14 40 40 H 1.09005 * 109.43739 * 173.96109 * 16 15 14 41 41 H 1.08998 * 109.47424 * 179.76499 * 18 17 16 42 42 H 1.08997 * 109.47340 * 299.76840 * 18 17 16 43 43 H 0.97005 * 119.99964 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.49619 * 303.14937 * 27 17 16 45 45 H 1.09000 * 109.49509 * 183.07139 * 27 17 16 46 46 H 1.09000 * 109.62886 * 350.90057 * 28 14 12 47 47 H 1.09002 * 109.62666 * 111.47500 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0831 -0.8018 -1.2057 5 8 3.3944 -1.2135 -0.7635 6 6 3.2727 -1.5877 0.6191 7 6 2.0826 -0.8011 1.2040 8 1 1.3248 -1.4844 1.5876 9 7 2.5367 0.1077 2.2595 10 6 2.5758 -0.3122 3.5395 11 8 2.2343 -1.4429 3.8179 12 6 3.0396 0.6147 4.6163 13 8 3.4943 1.7019 4.3266 14 7 2.9529 0.2432 5.9089 15 6 3.3789 1.1505 6.9854 16 6 2.2397 1.2480 8.0125 17 7 1.8660 -0.1031 8.4513 18 6 0.9036 -0.0492 9.5598 19 6 -0.3377 0.6793 9.1125 20 1 -0.3753 1.1301 8.1318 21 6 -1.4251 0.7700 9.9552 22 7 -1.3791 0.2214 11.1496 23 14 -2.9632 1.6735 9.4010 24 1 -2.7616 2.1969 8.0261 25 1 -4.1169 0.7384 9.4101 26 1 -3.2343 2.8030 10.3263 27 6 1.3390 -0.8992 7.3349 28 6 2.4355 -1.0825 6.2802 29 1 -0.3633 -1.0276 -0.0127 30 1 -0.3632 0.5029 0.8963 31 1 -0.3632 0.5248 -0.8835 32 1 1.4565 -1.6701 -1.4092 33 1 2.1550 -0.1666 -2.0886 34 1 3.0840 -2.6583 0.6980 35 1 4.1875 -1.3323 1.1540 36 1 2.8094 1.0116 2.0371 37 1 4.2748 0.7553 7.4641 38 1 3.5863 2.1374 6.5718 39 1 1.3769 1.7345 7.5576 40 1 2.5744 1.8299 8.8713 41 1 0.6407 -1.0628 9.8624 42 1 1.3499 0.4776 10.4032 43 1 -2.1443 0.2850 11.7424 44 1 0.4886 -0.3830 6.8894 45 1 1.0208 -1.8749 7.7022 46 1 2.0190 -1.5727 5.4003 47 1 3.2425 -1.6882 6.6926 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932091045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:00 Heat of formation + Delta-G solvation = -84.959883 kcal Electronic energy + Delta-G solvation = -28605.716555 eV Core-core repulsion = 24596.493346 eV Total energy + Delta-G solvation = -4009.223209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.14799 -39.99850 -38.54997 -37.61143 -35.43537 -34.35492 -33.16856 -32.32667 -30.69403 -29.42360 -28.34011 -26.73377 -25.82094 -24.56549 -23.28944 -22.69678 -21.86308 -21.25979 -20.52890 -19.29519 -17.68114 -17.47272 -16.80437 -16.37695 -16.28907 -15.91127 -15.73312 -15.46018 -14.83744 -14.65102 -14.42348 -14.36688 -14.07779 -13.70413 -13.67292 -13.52795 -13.44024 -12.85855 -12.70028 -12.46351 -12.31197 -11.87725 -11.84359 -11.51440 -11.41218 -11.33007 -11.17128 -11.05335 -10.85948 -10.71206 -10.60878 -10.29921 -10.24982 -9.95340 -9.70026 -9.52067 -9.00590 -8.57452 -8.48472 -7.27461 -6.08492 -4.17932 1.33738 2.19892 3.13353 3.22291 3.30729 3.34006 3.37624 3.51137 3.89106 4.23387 4.28929 4.35845 4.42034 4.57843 4.80374 4.91686 4.95353 5.11706 5.21544 5.23348 5.25024 5.32509 5.39023 5.45617 5.51055 5.52316 5.64314 5.72032 5.79193 5.84422 5.92383 6.00586 6.33260 6.36107 6.46901 6.55681 6.60128 6.71496 6.86012 7.19044 7.36434 7.46215 7.64605 7.83526 7.93516 7.97076 8.17429 8.22598 8.92125 9.49486 10.96649 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.002965 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.135660 B = 9441.996469 C =10385.626944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.051 3.949 5 O -0.374 6.374 6 C 0.036 3.964 7 C 0.112 3.888 8 H 0.113 0.887 9 N -0.693 5.693 10 C 0.515 3.485 11 O -0.504 6.504 12 C 0.502 3.498 13 O -0.536 6.536 14 N -0.566 5.566 15 C 0.110 3.890 16 C 0.051 3.949 17 N -0.543 5.543 18 C 0.187 3.813 19 C -0.551 4.551 20 H 0.056 0.944 21 C 0.066 3.934 22 N -0.889 5.889 23 Si 0.888 3.112 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.052 3.948 28 C 0.056 3.944 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.415 0.585 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.030 0.970 43 H 0.262 0.738 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.147 0.853 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.229 -2.036 -22.178 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 H 0.113 0.887 4 C -0.025 4.025 5 O -0.293 6.293 6 C -0.042 4.042 7 C 0.007 3.993 8 H 0.130 0.870 9 N -0.347 5.347 10 C 0.297 3.703 11 O -0.380 6.380 12 C 0.284 3.716 13 O -0.414 6.414 14 N -0.297 5.297 15 C -0.012 4.012 16 C -0.079 4.079 17 N -0.267 5.267 18 C 0.061 3.939 19 C -0.590 4.590 20 H 0.074 0.926 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.077 4.077 28 C -0.065 4.065 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.252 0.748 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.163 0.837 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.738 -2.552 -21.883 23.351 hybrid contribution -1.825 1.350 -0.182 2.277 sum 5.912 -1.202 -22.065 22.875 Atomic orbital electron populations 1.21742 0.92771 1.02769 1.02880 1.23036 0.97616 1.00663 0.93969 0.88705 1.23636 0.84281 0.97795 0.96837 1.88918 1.28928 1.86431 1.25026 1.23679 0.99048 0.99015 0.82470 1.22618 0.96929 0.92280 0.87489 0.86951 1.45821 1.65753 1.17497 1.05599 1.20435 0.78154 0.87748 0.83963 1.90391 1.47301 1.20244 1.80079 1.19807 0.80951 0.86858 0.83982 1.90733 1.46197 1.22218 1.82293 1.48147 1.59358 1.17953 1.04280 1.22149 0.98193 0.94016 0.86855 1.22319 0.96005 0.92530 0.96996 1.62526 1.43483 1.11882 1.08791 1.19775 0.88108 0.97715 0.88254 1.21774 1.00059 1.35777 1.01399 0.92590 1.24957 0.98582 0.95344 0.94831 1.69949 1.30895 1.44267 1.07677 0.86597 0.83341 0.79695 0.78740 1.19942 1.20877 1.20861 1.22242 0.94852 0.99125 0.91524 1.23457 0.98031 0.82424 1.02594 0.91874 0.91685 0.91670 0.91509 0.88415 0.90997 0.89138 0.74819 0.90585 0.89260 0.93827 0.90108 0.94602 0.95216 0.92795 0.94181 0.90244 0.83662 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.17 37.16 0.34 -0.49 16 2 C -0.13 -0.86 3.44 -88.61 -0.30 -1.16 16 3 H 0.09 0.58 7.77 -51.93 -0.40 0.18 16 4 C 0.05 0.32 7.17 38.22 0.27 0.60 16 5 O -0.37 -3.49 11.52 -35.23 -0.41 -3.90 16 6 C 0.04 0.31 7.50 37.78 0.28 0.60 16 7 C 0.11 0.94 2.99 -66.36 -0.20 0.74 16 8 H 0.11 1.02 7.27 -51.92 -0.38 0.64 16 9 N -0.69 -6.97 5.02 -52.71 -0.26 -7.24 16 10 C 0.51 6.74 7.81 -11.59 -0.09 6.65 16 11 O -0.50 -7.20 12.69 5.50 0.07 -7.13 16 12 C 0.50 7.67 7.77 -11.59 -0.09 7.58 16 13 O -0.54 -8.86 15.95 5.49 0.09 -8.77 16 14 N -0.57 -9.07 3.00 -172.69 -0.52 -9.59 16 15 C 0.11 1.75 6.62 -3.36 -0.02 1.73 16 16 C 0.05 0.97 5.18 -3.47 -0.02 0.95 16 17 N -0.54 -11.32 4.83 -235.47 -1.14 -12.45 16 18 C 0.19 4.70 5.11 -4.97 -0.03 4.67 16 19 C -0.55 -14.91 7.76 -34.44 -0.27 -15.18 16 20 H 0.06 1.53 5.88 -52.49 -0.31 1.22 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 22 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 23 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 C 0.05 0.99 5.24 -3.70 -0.02 0.97 16 28 C 0.06 0.89 6.35 -3.60 -0.02 0.87 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.36 8.04 -51.93 -0.42 -0.06 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.84 7.94 -51.93 -0.41 0.43 16 36 H 0.41 3.81 7.88 -40.82 -0.32 3.49 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.09 1.38 7.07 -51.93 -0.37 1.01 16 39 H 0.04 0.93 6.63 -51.93 -0.34 0.58 16 40 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 41 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.04 0.85 7.09 -51.93 -0.37 0.48 16 45 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 46 H 0.15 2.27 3.92 -56.52 -0.22 2.05 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -31.00 371.92 -8.42 -39.42 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.32 Total: 2.62 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -0.26 Total: 10.26 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -1.18 Total: -54.36 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.25 Total: -19.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.00 -8.42 -39.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932091045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.536 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds