Wall clock time and date at job start Tue Mar 31 2020 06:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.80888 * 2 1 4 4 C 1.55005 * 110.90469 * 236.37511 * 2 1 3 5 5 O 1.44380 * 103.49264 * 204.74430 * 4 2 1 6 6 C 1.43750 * 106.97116 * 40.06090 * 5 4 2 7 7 C 1.54186 * 107.30362 * 333.48934 * 6 5 4 8 8 H 1.09010 * 110.50198 * 120.68480 * 7 6 5 9 9 N 1.46500 * 110.51937 * 243.35687 * 7 6 5 10 10 C 1.34774 * 119.99967 * 269.73634 * 9 7 6 11 11 O 1.21351 * 120.00306 * 359.97438 * 10 9 7 12 12 C 1.49450 * 120.00260 * 179.97438 * 10 9 7 13 13 O 1.21355 * 119.99785 * 353.35193 * 12 10 9 14 14 N 1.34776 * 120.00512 * 173.35407 * 12 10 9 15 15 C 1.47086 * 120.88154 * 181.21982 * 14 12 10 16 16 C 1.53695 * 108.27368 * 128.75673 * 15 14 12 17 17 N 1.46894 * 109.25766 * 54.08423 * 16 15 14 18 18 C 1.46900 * 110.99855 * 172.60690 * 17 16 15 19 19 C 1.50709 * 109.47119 * 59.76781 * 18 17 16 20 20 H 1.07997 * 120.00050 * 355.26013 * 19 18 17 21 21 C 1.37878 * 119.99706 * 175.26158 * 19 18 17 22 22 N 1.31513 * 120.00200 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99557 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47596 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46872 * 120.00400 * 23 21 19 26 26 H 1.48503 * 109.47153 * 240.00059 * 23 21 19 27 27 C 1.46898 * 111.26844 * 296.75142 * 17 16 15 28 28 C 1.47078 * 120.88038 * 1.49697 * 14 12 10 29 29 H 1.08998 * 109.47182 * 179.29459 * 1 2 3 30 30 H 1.09004 * 109.46558 * 299.29384 * 1 2 3 31 31 H 1.08996 * 109.46708 * 59.29143 * 1 2 3 32 32 H 1.08996 * 110.61861 * 323.25040 * 4 2 1 33 33 H 1.09001 * 110.61599 * 86.08563 * 4 2 1 34 34 H 1.09002 * 109.87500 * 92.91688 * 6 5 4 35 35 H 1.09003 * 109.87302 * 213.90972 * 6 5 4 36 36 H 0.96994 * 120.00065 * 89.73038 * 9 7 6 37 37 H 1.08999 * 109.62200 * 248.52474 * 15 14 12 38 38 H 1.08999 * 109.62836 * 9.10321 * 15 14 12 39 39 H 1.08993 * 109.64617 * 294.07452 * 16 15 14 40 40 H 1.09005 * 109.43739 * 173.96109 * 16 15 14 41 41 H 1.08998 * 109.47424 * 179.76499 * 18 17 16 42 42 H 1.08997 * 109.47340 * 299.76840 * 18 17 16 43 43 H 0.97005 * 119.99964 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.49619 * 303.14937 * 27 17 16 45 45 H 1.09000 * 109.49509 * 183.07139 * 27 17 16 46 46 H 1.09000 * 109.62886 * 350.90057 * 28 14 12 47 47 H 1.09002 * 109.62666 * 111.47500 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0831 -0.8018 -1.2057 5 8 3.3944 -1.2135 -0.7635 6 6 3.2727 -1.5877 0.6191 7 6 2.0826 -0.8011 1.2040 8 1 1.3248 -1.4844 1.5876 9 7 2.5367 0.1077 2.2595 10 6 2.5758 -0.3122 3.5395 11 8 2.2343 -1.4429 3.8179 12 6 3.0396 0.6147 4.6163 13 8 3.4943 1.7019 4.3266 14 7 2.9529 0.2432 5.9089 15 6 3.3789 1.1505 6.9854 16 6 2.2397 1.2480 8.0125 17 7 1.8660 -0.1031 8.4513 18 6 0.9036 -0.0492 9.5598 19 6 -0.3377 0.6793 9.1125 20 1 -0.3753 1.1301 8.1318 21 6 -1.4251 0.7700 9.9552 22 7 -1.3791 0.2214 11.1496 23 14 -2.9632 1.6735 9.4010 24 1 -2.7616 2.1969 8.0261 25 1 -4.1169 0.7384 9.4101 26 1 -3.2343 2.8030 10.3263 27 6 1.3390 -0.8992 7.3349 28 6 2.4355 -1.0825 6.2802 29 1 -0.3633 -1.0276 -0.0127 30 1 -0.3632 0.5029 0.8963 31 1 -0.3632 0.5248 -0.8835 32 1 1.4565 -1.6701 -1.4092 33 1 2.1550 -0.1666 -2.0886 34 1 3.0840 -2.6583 0.6980 35 1 4.1875 -1.3323 1.1540 36 1 2.8094 1.0116 2.0371 37 1 4.2748 0.7553 7.4641 38 1 3.5863 2.1374 6.5718 39 1 1.3769 1.7345 7.5576 40 1 2.5744 1.8299 8.8713 41 1 0.6407 -1.0628 9.8624 42 1 1.3499 0.4776 10.4032 43 1 -2.1443 0.2850 11.7424 44 1 0.4886 -0.3830 6.8894 45 1 1.0208 -1.8749 7.7022 46 1 2.0190 -1.5727 5.4003 47 1 3.2425 -1.6882 6.6926 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932091045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:59 Heat of formation + Delta-G solvation = -108.711520 kcal Electronic energy + Delta-G solvation = -28606.746504 eV Core-core repulsion = 24596.493346 eV Total energy + Delta-G solvation = -4010.253157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20745 -40.86113 -39.67068 -39.04258 -36.54123 -35.68039 -34.33531 -33.80657 -32.12856 -30.31492 -29.89562 -27.57003 -27.17638 -25.91202 -24.62253 -24.05898 -23.10449 -21.99528 -21.74389 -20.60765 -18.93727 -18.42983 -18.30849 -17.75846 -17.20699 -16.89312 -16.73641 -16.63237 -16.31837 -16.04328 -15.75573 -15.47375 -15.44713 -15.05344 -14.98193 -14.38294 -14.24329 -14.18177 -13.84065 -13.60633 -13.40093 -13.10318 -12.97048 -12.91206 -12.79464 -12.52510 -12.47891 -12.45173 -12.15089 -11.97439 -11.94819 -11.82999 -11.81875 -11.67203 -10.90921 -10.64992 -10.36859 -10.18460 -9.92036 -9.08983 -8.19443 -6.38768 0.21262 1.14431 1.32587 1.34421 1.45269 1.99710 2.31060 2.33838 2.89245 3.05821 3.12434 3.30873 3.32729 3.71346 3.83002 3.96285 3.99136 4.06771 4.22250 4.27991 4.33206 4.40373 4.47476 4.52685 4.62404 4.68357 4.68710 4.77146 4.82853 4.87108 4.91999 5.00159 5.08093 5.12540 5.15578 5.25048 5.28260 5.29920 5.40585 5.69887 5.74618 5.89016 5.98153 6.10899 6.22891 6.42429 6.57862 6.80209 6.81714 7.32884 8.83336 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.002965 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.135660 B = 9441.996469 C =10385.626944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 H 0.100 0.900 4 C 0.049 3.951 5 O -0.393 6.393 6 C 0.038 3.962 7 C 0.109 3.891 8 H 0.109 0.891 9 N -0.677 5.677 10 C 0.517 3.483 11 O -0.517 6.517 12 C 0.502 3.498 13 O -0.548 6.548 14 N -0.574 5.574 15 C 0.120 3.880 16 C 0.054 3.946 17 N -0.539 5.539 18 C 0.200 3.800 19 C -0.558 4.558 20 H 0.051 0.949 21 C 0.015 3.985 22 N -0.923 5.923 23 Si 0.955 3.045 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.276 1.276 27 C 0.055 3.945 28 C 0.071 3.929 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.420 0.580 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.018 0.982 40 H 0.081 0.919 41 H 0.012 0.988 42 H 0.009 0.991 43 H 0.266 0.734 44 H 0.015 0.985 45 H 0.077 0.923 46 H 0.156 0.844 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 -1.684 -24.469 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.118 0.882 4 C -0.027 4.027 5 O -0.313 6.313 6 C -0.040 4.040 7 C 0.005 3.995 8 H 0.127 0.873 9 N -0.330 5.330 10 C 0.299 3.701 11 O -0.395 6.395 12 C 0.285 3.715 13 O -0.427 6.427 14 N -0.306 5.306 15 C -0.002 4.002 16 C -0.075 4.075 17 N -0.263 5.263 18 C 0.073 3.927 19 C -0.597 4.597 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.563 5.563 23 Si 0.780 3.220 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.075 4.075 28 C -0.050 4.050 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.258 0.742 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.037 0.963 40 H 0.100 0.900 41 H 0.030 0.970 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.095 0.905 46 H 0.172 0.828 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.682 -2.187 -24.220 25.503 hybrid contribution -1.771 1.251 0.468 2.219 sum 5.911 -0.935 -23.752 24.494 Atomic orbital electron populations 1.21734 0.92132 1.03115 1.02973 1.23022 0.98004 1.00620 0.92875 0.88188 1.23830 0.83211 0.98521 0.97128 1.88901 1.30665 1.86632 1.25060 1.23620 0.98592 0.99303 0.82460 1.22775 0.96885 0.92340 0.87518 0.87330 1.45795 1.64371 1.17943 1.04876 1.20042 0.78500 0.87156 0.84397 1.90364 1.48376 1.20519 1.80265 1.20169 0.80307 0.86955 0.84108 1.90723 1.46602 1.22851 1.82510 1.48208 1.59754 1.17906 1.04774 1.22032 0.97158 0.94841 0.86164 1.22320 0.96265 0.91124 0.97815 1.62466 1.41901 1.13234 1.08658 1.19442 0.88411 0.95605 0.89196 1.21970 1.00911 1.35665 1.01115 0.93112 1.25767 1.01733 0.96154 0.94874 1.70055 1.31998 1.45463 1.08741 0.85559 0.79524 0.78577 0.78320 1.19652 1.20164 1.20178 1.22261 0.95422 0.98232 0.91542 1.23357 0.97247 0.82674 1.01685 0.91495 0.92962 0.90145 0.90367 0.86726 0.90486 0.89979 0.74156 0.88825 0.88409 0.96344 0.90020 0.97017 0.97319 0.92496 0.96617 0.90494 0.82769 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.17 71.98 0.66 -0.68 16 2 C -0.13 -1.34 3.44 -9.49 -0.03 -1.37 16 3 H 0.10 0.99 7.77 -2.39 -0.02 0.97 16 4 C 0.05 0.50 7.17 72.67 0.52 1.02 16 5 O -0.39 -6.64 11.52 -148.98 -1.72 -8.35 16 6 C 0.04 0.61 7.50 72.38 0.54 1.15 16 7 C 0.11 1.66 2.99 46.01 0.14 1.80 16 8 H 0.11 1.80 7.27 -2.38 -0.02 1.78 16 9 N -0.68 -12.59 5.02 -439.03 -2.21 -14.79 16 10 C 0.52 12.86 7.81 87.27 0.68 13.54 16 11 O -0.52 -14.10 12.69 -3.25 -0.04 -14.14 16 12 C 0.50 14.66 7.77 87.27 0.68 15.34 16 13 O -0.55 -17.29 15.95 -3.26 -0.05 -17.35 16 14 N -0.57 -17.75 3.00 -818.61 -2.46 -20.21 16 15 C 0.12 3.69 6.62 86.50 0.57 4.26 16 16 C 0.05 2.06 5.18 86.54 0.45 2.51 16 17 N -0.54 -22.79 4.83 -898.90 -4.34 -27.13 16 18 C 0.20 10.38 5.11 85.56 0.44 10.82 16 19 C -0.56 -30.80 7.76 25.60 0.20 -30.60 16 20 H 0.05 2.82 5.88 -2.91 -0.02 2.80 16 21 C 0.01 0.81 5.46 84.66 0.46 1.28 16 22 N -0.92 -54.40 13.29 21.45 0.28 -54.12 16 23 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 27 C 0.05 2.11 5.24 86.38 0.45 2.56 16 28 C 0.07 2.20 6.35 86.35 0.55 2.75 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.63 8.04 -2.39 -0.02 0.61 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.44 7.94 -2.39 -0.02 1.42 16 36 H 0.42 7.02 7.88 -92.71 -0.73 6.28 16 37 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.10 2.88 7.07 -2.39 -0.02 2.86 16 39 H 0.02 0.79 6.63 -2.39 -0.02 0.78 16 40 H 0.08 3.06 8.11 -2.38 -0.02 3.04 16 41 H 0.01 0.66 8.07 -2.39 -0.02 0.64 16 42 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 44 H 0.02 0.68 7.09 -2.39 -0.02 0.66 16 45 H 0.08 2.97 8.06 -2.39 -0.02 2.95 16 46 H 0.16 4.65 3.92 -75.03 -0.29 4.35 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -66.34 371.92 -2.22 -68.56 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.03 Total: 17.25 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 6.31 Total: 24.38 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -8.72 Total: -116.25 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.81 Total: -39.84 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.34 -2.22 -68.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932091045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.153 kcal (2) G-P(sol) polarization free energy of solvation -66.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds