Wall clock time and date at job start Tue Mar 31 2020 06:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.50043 * 2 1 4 4 C 1.53194 * 109.49603 * 120.09703 * 2 1 3 5 5 N 1.46917 * 108.77776 * 174.58670 * 4 2 1 6 6 C 1.36941 * 120.63395 * 126.41359 * 5 4 2 7 7 H 1.07998 * 119.99975 * 207.67486 * 6 5 4 8 8 C 1.38809 * 119.99704 * 27.67382 * 6 5 4 9 9 N 1.31621 * 120.00101 * 17.35954 * 8 6 5 10 10 Si 1.86803 * 119.99782 * 197.35810 * 8 6 5 11 11 H 1.48498 * 109.47254 * 60.00044 * 10 8 6 12 12 H 1.48497 * 109.47206 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47223 * 299.99958 * 10 8 6 14 14 C 1.46931 * 118.73668 * 306.38912 * 5 4 2 15 15 C 1.53166 * 108.76581 * 53.61292 * 14 5 4 16 16 C 1.53038 * 109.32644 * 305.34861 * 15 14 5 17 17 H 1.08996 * 109.46225 * 181.38594 * 16 15 14 18 18 N 1.46500 * 109.46319 * 301.36403 * 16 15 14 19 19 C 1.34773 * 120.00058 * 275.02388 * 18 16 15 20 20 O 1.21282 * 119.99695 * 0.02562 * 19 18 16 21 21 C 1.50696 * 120.00093 * 179.97438 * 19 18 16 22 22 N 1.46500 * 109.47174 * 179.97438 * 21 19 18 23 23 C 1.46097 * 118.72625 * 90.00077 * 22 21 19 24 24 C 1.53020 * 109.92410 * 161.62231 * 23 22 21 25 25 O 1.43253 * 108.67074 * 49.15660 * 24 23 22 26 26 C 1.42960 * 112.98818 * 291.64051 * 25 24 23 27 27 C 1.33864 * 118.73350 * 269.73439 * 22 21 19 28 28 O 1.21288 * 118.83298 * 1.89935 * 27 22 21 29 29 H 1.09001 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46931 * 300.06763 * 1 2 3 31 31 H 1.09000 * 109.46549 * 60.06495 * 1 2 3 32 32 H 1.09000 * 109.58786 * 294.37253 * 4 2 1 33 33 H 1.09003 * 109.58754 * 54.79516 * 4 2 1 34 34 H 0.96997 * 119.99554 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.58375 * 173.39281 * 14 5 4 36 36 H 1.08996 * 109.59006 * 293.67500 * 14 5 4 37 37 H 1.09006 * 109.47582 * 185.40406 * 15 14 5 38 38 H 1.08993 * 109.50410 * 65.31469 * 15 14 5 39 39 H 0.96999 * 119.99624 * 95.02564 * 18 16 15 40 40 H 1.08997 * 109.47423 * 299.99971 * 21 19 18 41 41 H 1.09003 * 109.47352 * 60.00086 * 21 19 18 42 42 H 1.09005 * 109.39630 * 281.75518 * 23 22 21 43 43 H 1.08993 * 109.39802 * 41.48041 * 23 22 21 44 44 H 1.08997 * 109.60583 * 168.91754 * 24 23 22 45 45 H 1.09009 * 109.60339 * 289.40923 * 24 23 22 46 46 H 1.09000 * 109.41350 * 169.70271 * 26 25 24 47 47 H 1.08993 * 109.41658 * 289.49152 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7242 1.2494 5 7 3.5045 -0.8295 1.1695 6 6 4.2935 -0.3800 2.1945 7 1 5.2988 -0.0406 1.9933 8 6 3.8011 -0.3606 3.4922 9 7 2.7374 -1.0708 3.8031 10 14 4.6480 0.6734 4.7972 11 1 4.6316 2.1002 4.3859 12 1 3.9329 0.5221 6.0898 13 1 6.0533 0.2194 4.9535 14 6 4.1052 -1.4268 -0.0310 15 6 3.5709 -0.6947 -1.2657 16 6 2.0409 -0.7228 -1.2485 17 1 1.6584 -0.2238 -2.1389 18 7 1.5783 -2.1128 -1.2314 19 6 1.4497 -2.7945 -2.3868 20 8 1.7172 -2.2574 -3.4408 21 6 0.9744 -4.2245 -2.3691 22 7 0.9191 -4.7377 -3.7402 23 6 2.1049 -5.3854 -4.2959 24 6 1.7163 -6.2305 -5.5109 25 8 0.9068 -5.4337 -6.3838 26 6 -0.3761 -5.1285 -5.8318 27 6 -0.2177 -4.6000 -4.4334 28 8 -1.1520 -4.0245 -3.9166 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3632 0.5128 -0.8906 32 1 1.7638 -0.1585 2.1389 33 1 1.6052 -1.7220 1.2976 34 1 2.3932 -1.0569 4.7099 35 1 5.1896 -1.3247 0.0135 36 1 3.8396 -2.4825 -0.0860 37 1 3.9337 -1.1893 -2.1669 38 1 3.9159 0.3391 -1.2535 39 1 1.3647 -2.5424 -0.3884 40 1 1.6650 -4.8297 -1.7819 41 1 -0.0192 -4.2717 -1.9235 42 1 2.8242 -4.6246 -4.5993 43 1 2.5558 -6.0263 -3.5384 44 1 2.6159 -6.5504 -6.0367 45 1 1.1512 -7.1034 -5.1836 46 1 -0.8682 -4.3790 -6.4516 47 1 -0.9843 -6.0327 -5.8072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942129722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:55 Heat of formation + Delta-G solvation = -107.027530 kcal Electronic energy + Delta-G solvation = -29265.530176 eV Core-core repulsion = 25255.350042 eV Total energy + Delta-G solvation = -4010.180134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95548 -40.95287 -39.14051 -38.68526 -36.40870 -35.86734 -33.77498 -33.54588 -31.70957 -31.14941 -30.01568 -27.57431 -27.41889 -26.55329 -24.84465 -23.88112 -22.66012 -22.01427 -20.18629 -20.04998 -18.80432 -18.76712 -18.48090 -18.06355 -17.00200 -16.78261 -16.61112 -16.36801 -16.16501 -15.83400 -15.57532 -15.38008 -15.19017 -14.86652 -14.69571 -14.52778 -14.45609 -14.25079 -13.86242 -13.61466 -13.19359 -13.03946 -12.93179 -12.78537 -12.75287 -12.55326 -12.48530 -12.27238 -12.20467 -11.79763 -11.72930 -11.61881 -11.48042 -11.16907 -11.11375 -10.53141 -10.51132 -9.98471 -9.86274 -8.65900 -7.86808 -5.30409 1.29312 1.47794 1.50312 1.56275 1.62662 1.67252 2.36322 2.52076 2.81198 3.27914 3.29212 3.64244 3.72845 3.81651 3.88066 3.99194 4.05735 4.15604 4.19610 4.21614 4.31754 4.32749 4.40650 4.47982 4.56822 4.65333 4.72323 4.74422 4.82680 4.86761 4.93576 5.01097 5.07370 5.10222 5.14976 5.26530 5.33106 5.50822 5.60419 5.65917 5.76141 5.79904 6.24308 6.40301 6.55583 6.89693 7.16582 7.23815 7.86756 8.37943 9.18690 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.025245 B = 0.002906 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.849658 B = 9633.754126 C = 9962.356245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.068 0.932 4 C 0.190 3.810 5 N -0.608 5.608 6 C -0.265 4.265 7 H 0.062 0.938 8 C -0.043 4.043 9 N -0.927 5.927 10 Si 0.961 3.039 11 H -0.282 1.282 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.152 3.848 15 C -0.131 4.131 16 C 0.169 3.831 17 H 0.066 0.934 18 N -0.705 5.705 19 C 0.497 3.503 20 O -0.578 6.578 21 C 0.090 3.910 22 N -0.585 5.585 23 C 0.072 3.928 24 C 0.044 3.956 25 O -0.386 6.386 26 C 0.059 3.941 27 C 0.481 3.519 28 O -0.585 6.585 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.011 0.989 34 H 0.250 0.750 35 H 0.048 0.952 36 H 0.022 0.978 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.407 0.593 40 H 0.145 0.855 41 H 0.114 0.886 42 H 0.062 0.938 43 H 0.119 0.881 44 H 0.142 0.858 45 H 0.087 0.913 46 H 0.131 0.869 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 -12.461 -16.178 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.086 0.914 4 C 0.064 3.936 5 N -0.331 5.331 6 C -0.395 4.395 7 H 0.079 0.921 8 C -0.239 4.239 9 N -0.572 5.572 10 Si 0.789 3.211 11 H -0.209 1.209 12 H -0.220 1.220 13 H -0.204 1.204 14 C 0.026 3.974 15 C -0.172 4.172 16 C 0.064 3.936 17 H 0.084 0.916 18 N -0.357 5.357 19 C 0.283 3.717 20 O -0.457 6.457 21 C -0.036 4.036 22 N -0.317 5.317 23 C -0.050 4.050 24 C -0.032 4.032 25 O -0.304 6.304 26 C -0.020 4.020 27 C 0.270 3.730 28 O -0.466 6.466 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.244 0.756 40 H 0.163 0.837 41 H 0.132 0.868 42 H 0.080 0.920 43 H 0.137 0.863 44 H 0.159 0.841 45 H 0.105 0.895 46 H 0.149 0.851 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.982 -11.768 -16.706 20.819 hybrid contribution 0.327 0.693 1.740 1.901 sum -3.655 -11.075 -14.966 18.974 Atomic orbital electron populations 1.21648 0.93949 1.01859 1.01489 1.21941 0.96247 0.99724 0.95726 0.91368 1.20580 0.82458 0.96067 0.94461 1.44270 1.02208 1.70059 1.16541 1.19407 0.98003 1.35357 0.86745 0.92063 1.25649 0.99417 1.00152 0.98652 1.70127 1.26817 1.41361 1.18945 0.85451 0.78078 0.79122 0.78423 1.20853 1.21966 1.20358 1.20884 0.96192 0.94353 0.85939 1.22212 0.95499 1.01182 0.98260 1.20671 0.93675 0.81750 0.97550 0.91631 1.46067 1.66813 1.13694 1.09147 1.21550 0.76849 0.89846 0.83453 1.90654 1.52089 1.71073 1.31922 1.21503 1.05650 0.91160 0.85327 1.47214 1.13467 1.57078 1.13929 1.22512 0.86571 0.97452 0.98436 1.23287 0.97635 0.92448 0.89834 1.88196 1.26764 1.72571 1.42888 1.22826 0.87359 1.03330 0.88472 1.21726 0.82066 0.79036 0.90192 1.90726 1.40755 1.44110 1.71019 0.92632 0.92503 0.92526 0.92547 0.97072 0.94050 0.93368 0.95987 0.92039 0.91860 0.75645 0.83749 0.86796 0.91971 0.86257 0.84062 0.89515 0.85125 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.05 71.98 0.65 -3.49 16 2 C -0.12 -4.20 2.67 -10.71 -0.03 -4.23 16 3 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 4 C 0.19 8.41 4.30 86.37 0.37 8.79 16 5 N -0.61 -28.89 2.99 -699.15 -2.09 -30.98 16 6 C -0.26 -14.10 9.59 84.03 0.81 -13.30 16 7 H 0.06 3.23 7.89 -2.91 -0.02 3.21 16 8 C -0.04 -2.29 4.91 84.86 0.42 -1.88 16 9 N -0.93 -51.99 11.19 21.65 0.24 -51.75 16 10 Si 0.96 43.75 29.59 68.60 2.03 45.78 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 C 0.15 6.07 6.25 86.35 0.54 6.61 16 15 C -0.13 -4.65 5.77 30.66 0.18 -4.48 16 16 C 0.17 5.78 2.21 45.02 0.10 5.88 16 17 H 0.07 2.38 7.58 -2.39 -0.02 2.36 16 18 N -0.70 -21.68 3.60 -442.41 -1.59 -23.27 16 19 C 0.50 15.19 7.86 87.66 0.69 15.87 16 20 O -0.58 -21.90 16.09 -3.04 -0.05 -21.95 16 21 C 0.09 2.02 5.78 85.63 0.49 2.52 16 22 N -0.59 -12.74 2.32 -828.98 -1.92 -14.67 16 23 C 0.07 1.04 6.68 86.46 0.58 1.61 16 24 C 0.04 0.44 6.89 71.99 0.50 0.94 16 25 O -0.39 -6.59 10.86 -148.98 -1.62 -8.21 16 26 C 0.06 1.02 6.98 71.12 0.50 1.51 16 27 C 0.48 12.06 7.58 87.68 0.66 12.72 16 28 O -0.59 -19.52 16.38 -3.05 -0.05 -19.57 16 29 H 0.05 1.68 7.53 -2.39 -0.02 1.66 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 2.91 6.04 -2.39 -0.01 2.89 16 33 H 0.01 0.51 6.64 -2.39 -0.02 0.49 16 34 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 35 H 0.05 1.94 7.93 -2.38 -0.02 1.92 16 36 H 0.02 0.86 7.74 -2.39 -0.02 0.84 16 37 H 0.06 2.10 8.14 -2.38 -0.02 2.09 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.41 12.05 6.73 -92.71 -0.62 11.43 16 40 H 0.14 2.17 7.93 -2.39 -0.02 2.15 16 41 H 0.11 2.64 7.28 -2.39 -0.02 2.62 16 42 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.12 0.95 7.99 -2.39 -0.02 0.93 16 44 H 0.14 0.70 8.14 -2.39 -0.02 0.69 16 45 H 0.09 0.51 8.10 -2.38 -0.02 0.49 16 46 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -73.99 371.83 1.75 -72.24 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.35 Total: 23.27 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 6.45 Total: 29.10 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -5.37 Total: -120.67 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -1.72 Total: -49.73 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -73.99 1.75 -72.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942129722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.783 kcal (2) G-P(sol) polarization free energy of solvation -73.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds