Wall clock time and date at job start Tue Mar 31 2020 06:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.58387 * 2 1 4 4 C 1.53189 * 109.70438 * 120.36224 * 2 1 3 5 5 C 1.53042 * 109.30941 * 174.49004 * 4 2 1 6 6 H 1.09006 * 109.45328 * 178.62348 * 5 4 2 7 7 N 1.46495 * 109.46120 * 58.65643 * 5 4 2 8 8 C 1.34780 * 120.00275 * 154.99724 * 7 5 4 9 9 O 1.21279 * 119.99988 * 359.97438 * 8 7 5 10 10 C 1.50702 * 120.00189 * 179.97438 * 8 7 5 11 11 N 1.46501 * 109.46923 * 180.02562 * 10 8 7 12 12 C 1.46088 * 118.72552 * 269.72957 * 11 10 8 13 13 C 1.53213 * 109.82156 * 161.47110 * 12 11 10 14 14 O 1.43247 * 108.51514 * 49.53826 * 13 12 11 15 15 C 1.42971 * 112.98688 * 291.45962 * 14 13 12 16 16 C 1.33867 * 118.73031 * 89.99840 * 11 10 8 17 17 O 1.21287 * 118.83099 * 1.88320 * 16 11 10 18 18 C 1.53041 * 109.54001 * 298.62927 * 5 4 2 19 19 C 1.52766 * 109.37959 * 61.24408 * 18 5 4 20 20 N 1.46923 * 109.00771 * 305.58967 * 19 18 5 21 21 C 1.36943 * 120.62915 * 233.58702 * 20 19 18 22 22 H 1.07994 * 120.00013 * 149.94689 * 21 20 19 23 23 C 1.38812 * 119.99800 * 329.94202 * 21 20 19 24 24 N 1.31621 * 119.99722 * 344.64946 * 23 21 20 25 25 Si 1.86797 * 120.00136 * 164.64980 * 23 21 20 26 26 H 1.48497 * 109.47049 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47033 * 119.99925 * 25 23 21 28 28 H 1.48503 * 109.47061 * 240.00183 * 25 23 21 29 29 H 1.08996 * 109.47037 * 180.27931 * 1 2 3 30 30 H 1.09001 * 109.46810 * 300.27912 * 1 2 3 31 31 H 1.09000 * 109.47270 * 60.27862 * 1 2 3 32 32 H 1.08997 * 109.49676 * 294.43946 * 4 2 1 33 33 H 1.08992 * 109.49987 * 54.50698 * 4 2 1 34 34 H 0.97009 * 120.00019 * 334.99758 * 7 5 4 35 35 H 1.09003 * 109.46930 * 299.99844 * 10 8 7 36 36 H 1.09000 * 109.46972 * 60.00102 * 10 8 7 37 37 H 1.08997 * 109.40055 * 281.77598 * 12 11 10 38 38 H 1.08994 * 109.39598 * 41.50927 * 12 11 10 39 39 H 1.09005 * 109.82595 * 289.74309 * 13 12 11 40 40 H 1.09002 * 109.67076 * 169.23971 * 13 12 11 41 41 H 1.09002 * 109.41526 * 289.49464 * 15 14 13 42 42 H 1.09000 * 109.35632 * 169.66444 * 15 14 13 43 43 H 1.08993 * 109.49360 * 181.31878 * 18 5 4 44 44 H 1.08992 * 109.49668 * 301.41840 * 18 5 4 45 45 H 1.08998 * 109.50639 * 185.70385 * 19 18 5 46 46 H 1.09006 * 109.43076 * 65.41807 * 19 18 5 47 47 H 0.97006 * 119.99968 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0466 -0.7290 1.2444 5 6 3.5707 -0.8444 1.1671 6 1 3.9430 -1.3412 2.0632 7 7 4.1574 0.4945 1.0719 8 6 5.4216 0.7075 1.4878 9 8 6.0733 -0.2093 1.9414 10 6 6.0253 2.0848 1.3894 11 7 7.3977 2.0541 1.9012 12 6 7.6240 2.3186 3.3200 13 6 9.0046 1.7975 3.7319 14 8 9.9721 2.2807 2.7924 15 6 9.8295 1.6982 1.4946 16 6 8.3963 1.7901 1.0496 17 8 8.1357 1.6194 -0.1225 18 6 3.9602 -1.6609 -0.0673 19 6 3.4648 -0.9474 -1.3240 20 7 2.0226 -0.6979 -1.1955 21 6 1.1532 -1.1132 -2.1687 22 1 0.1400 -1.3818 -1.9088 23 6 1.5744 -1.1888 -3.4892 24 7 2.6853 -0.5887 -3.8610 25 14 0.5646 -2.1421 -4.7385 26 1 -0.6302 -2.7197 -4.0722 27 1 0.1320 -1.2283 -5.8262 28 1 1.3895 -3.2366 -5.3102 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3633 0.5182 0.8875 31 1 -0.3634 0.5095 -0.8925 32 1 1.7690 -0.1674 2.1364 33 1 1.6076 -1.7255 1.2907 34 1 3.6360 1.2279 0.7095 35 1 6.0337 2.4041 0.3472 36 1 5.4328 2.7842 1.9791 37 1 7.5697 3.3920 3.5013 38 1 6.8581 1.8142 3.9089 39 1 9.0044 0.7074 3.7287 40 1 9.2510 2.1602 4.7298 41 1 10.1307 0.6513 1.5322 42 1 10.4635 2.2325 0.7871 43 1 5.0446 -1.7625 -0.1088 44 1 3.5037 -2.6488 -0.0090 45 1 3.6509 -1.5745 -2.1959 46 1 3.9911 0.0008 -1.4340 47 1 2.9794 -0.6412 -4.7839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947395467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:43 Heat of formation + Delta-G solvation = -80.726822 kcal Electronic energy + Delta-G solvation = -29287.195791 eV Core-core repulsion = 25278.156141 eV Total energy + Delta-G solvation = -4009.039650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95582 -39.56593 -37.91864 -37.56741 -35.43016 -34.25056 -32.36138 -31.47662 -30.55916 -29.85493 -28.89267 -26.51317 -26.06755 -24.89399 -24.11585 -22.10222 -21.11439 -20.55436 -19.24665 -18.63972 -17.91324 -17.47947 -17.10133 -16.35932 -16.02999 -15.66494 -15.40250 -15.11647 -14.79270 -14.58891 -14.33370 -13.98538 -13.75217 -13.66902 -13.45151 -13.30539 -13.11261 -12.89738 -12.47633 -11.99657 -11.97912 -11.84227 -11.56595 -11.43243 -11.21942 -11.01310 -10.78363 -10.68997 -10.63496 -10.39947 -10.15019 -10.07583 -9.94235 -9.67840 -9.60206 -9.29951 -8.84444 -8.61637 -8.45217 -6.62093 -5.76617 -3.21838 2.31962 2.58333 2.84447 3.37317 3.40192 3.45444 3.46874 3.59517 4.09108 4.45541 4.49099 4.69099 4.83264 4.92252 4.96078 5.08536 5.13574 5.28218 5.31104 5.35163 5.36137 5.40295 5.44124 5.61423 5.65830 5.96138 5.98188 6.09355 6.22785 6.29237 6.35319 6.42657 6.45306 6.55348 6.63991 6.78189 6.94607 7.02295 7.03717 7.13808 7.39878 7.70816 7.79106 7.83345 7.93147 8.47234 8.47341 9.22636 9.86225 10.43018 11.31441 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.003158 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.628834 B = 8865.123463 C = 9695.111478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.019 0.981 4 C -0.138 4.138 5 C 0.156 3.844 6 H 0.070 0.930 7 N -0.710 5.710 8 C 0.499 3.501 9 O -0.545 6.545 10 C 0.088 3.912 11 N -0.587 5.587 12 C 0.084 3.916 13 C 0.044 3.956 14 O -0.373 6.373 15 C 0.053 3.947 16 C 0.491 3.509 17 O -0.530 6.530 18 C -0.153 4.153 19 C 0.177 3.823 20 N -0.587 5.587 21 C -0.253 4.253 22 H 0.069 0.931 23 C 0.004 3.996 24 N -0.900 5.900 25 Si 0.899 3.101 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.401 0.599 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.019 0.981 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.497 7.199 17.180 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.062 3.938 3 H 0.037 0.963 4 C -0.178 4.178 5 C 0.052 3.948 6 H 0.088 0.912 7 N -0.362 5.362 8 C 0.284 3.716 9 O -0.422 6.422 10 C -0.038 4.038 11 N -0.321 5.321 12 C -0.039 4.039 13 C -0.033 4.033 14 O -0.291 6.291 15 C -0.026 4.026 16 C 0.278 3.722 17 O -0.406 6.406 18 C -0.193 4.193 19 C 0.051 3.949 20 N -0.310 5.310 21 C -0.383 4.383 22 H 0.087 0.913 23 C -0.195 4.195 24 N -0.544 5.544 25 Si 0.729 3.271 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.216 1.216 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.237 0.763 35 H 0.137 0.863 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.133 0.867 41 H 0.110 0.890 42 H 0.149 0.851 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.037 0.963 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.048 6.592 16.761 20.156 hybrid contribution -0.990 -0.399 -0.953 1.431 sum 8.059 6.193 15.808 18.793 Atomic orbital electron populations 1.21801 0.95852 1.01496 1.00264 1.20373 0.93137 0.93085 0.87238 0.96327 1.22361 0.93912 1.02319 0.99194 1.20865 0.92983 0.82305 0.98646 0.91167 1.46113 1.13920 1.12734 1.63452 1.20917 0.82016 0.90925 0.77773 1.90646 1.60657 1.44765 1.46165 1.21394 0.83007 0.95541 1.03905 1.46993 1.05803 1.70150 1.09127 1.22185 0.98958 1.01496 0.81226 1.23039 0.86737 0.99769 0.93752 1.88164 1.54424 1.66735 1.19762 1.22829 0.92627 1.01517 0.85651 1.20976 0.88590 0.76362 0.86262 1.90810 1.84075 1.48727 1.17022 1.22472 0.99894 0.99387 0.97574 1.20589 0.83095 0.97194 0.93993 1.44127 1.02983 1.65010 1.18912 1.19178 0.95207 1.37801 0.86076 0.91307 1.25108 0.97826 0.99508 0.97034 1.70037 1.24001 1.43717 1.16602 0.86279 0.79616 0.79628 0.81560 1.20292 1.21781 1.21640 0.92720 0.94363 0.91889 0.92675 0.90720 0.76309 0.86331 0.87553 0.90529 0.89538 0.91354 0.86711 0.88985 0.85144 0.92882 0.91941 0.89862 0.96327 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.96 37.16 0.30 -2.12 16 2 C 0.17 3.22 3.20 -67.60 -0.22 3.01 16 3 H 0.02 0.36 6.64 -51.93 -0.34 0.02 16 4 C -0.14 -2.24 5.08 -26.61 -0.14 -2.38 16 5 C 0.16 2.69 2.78 -67.89 -0.19 2.50 16 6 H 0.07 1.22 7.58 -51.93 -0.39 0.82 16 7 N -0.71 -11.15 4.27 -53.76 -0.23 -11.38 16 8 C 0.50 7.89 7.85 -10.98 -0.09 7.80 16 9 O -0.54 -10.28 16.09 5.56 0.09 -10.19 16 10 C 0.09 1.09 5.80 -5.19 -0.03 1.06 16 11 N -0.59 -7.17 2.32 -175.67 -0.41 -7.57 16 12 C 0.08 0.70 6.63 -4.15 -0.03 0.67 16 13 C 0.04 0.33 6.91 37.27 0.26 0.59 16 14 O -0.37 -3.57 10.85 -35.23 -0.38 -3.96 16 15 C 0.05 0.55 6.98 35.83 0.25 0.80 16 16 C 0.49 6.95 7.58 -11.56 -0.09 6.86 16 17 O -0.53 -9.82 16.36 5.55 0.09 -9.73 16 18 C -0.15 -3.13 5.76 -26.83 -0.15 -3.28 16 19 C 0.18 4.25 5.00 -3.93 -0.02 4.23 16 20 N -0.59 -13.99 2.99 -165.03 -0.49 -14.48 16 21 C -0.25 -6.67 8.57 -15.06 -0.13 -6.80 16 22 H 0.07 1.77 6.24 -52.49 -0.33 1.45 16 23 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 24 N -0.90 -26.15 11.24 55.49 0.62 -25.53 16 25 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H 0.05 0.99 7.43 -51.93 -0.39 0.60 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.22 7.63 -51.93 -0.40 0.82 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.40 5.87 6.87 -40.82 -0.28 5.59 16 35 H 0.12 1.64 7.23 -51.93 -0.38 1.27 16 36 H 0.11 0.89 8.04 -51.93 -0.42 0.48 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.67 8.13 -51.93 -0.42 0.25 16 39 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 40 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.08 2.30 6.16 -51.93 -0.32 1.98 16 46 H 0.02 0.48 7.74 -51.93 -0.40 0.07 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -34.66 369.41 -7.95 -42.61 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.42 Total: 5.08 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -0.36 Total: 12.98 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.51 Total: -58.96 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.20 Total: -23.88 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.66 -7.95 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947395467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.115 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds