Wall clock time and date at job start Tue Mar 31 2020 06:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.58387 * 2 1 4 4 C 1.53189 * 109.70438 * 120.36224 * 2 1 3 5 5 C 1.53042 * 109.30941 * 174.49004 * 4 2 1 6 6 H 1.09006 * 109.45328 * 178.62348 * 5 4 2 7 7 N 1.46495 * 109.46120 * 58.65643 * 5 4 2 8 8 C 1.34780 * 120.00275 * 154.99724 * 7 5 4 9 9 O 1.21279 * 119.99988 * 359.97438 * 8 7 5 10 10 C 1.50702 * 120.00189 * 179.97438 * 8 7 5 11 11 N 1.46501 * 109.46923 * 180.02562 * 10 8 7 12 12 C 1.46088 * 118.72552 * 269.72957 * 11 10 8 13 13 C 1.53213 * 109.82156 * 161.47110 * 12 11 10 14 14 O 1.43247 * 108.51514 * 49.53826 * 13 12 11 15 15 C 1.42971 * 112.98688 * 291.45962 * 14 13 12 16 16 C 1.33867 * 118.73031 * 89.99840 * 11 10 8 17 17 O 1.21287 * 118.83099 * 1.88320 * 16 11 10 18 18 C 1.53041 * 109.54001 * 298.62927 * 5 4 2 19 19 C 1.52766 * 109.37959 * 61.24408 * 18 5 4 20 20 N 1.46923 * 109.00771 * 305.58967 * 19 18 5 21 21 C 1.36943 * 120.62915 * 233.58702 * 20 19 18 22 22 H 1.07994 * 120.00013 * 149.94689 * 21 20 19 23 23 C 1.38812 * 119.99800 * 329.94202 * 21 20 19 24 24 N 1.31621 * 119.99722 * 344.64946 * 23 21 20 25 25 Si 1.86797 * 120.00136 * 164.64980 * 23 21 20 26 26 H 1.48497 * 109.47049 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47033 * 119.99925 * 25 23 21 28 28 H 1.48503 * 109.47061 * 240.00183 * 25 23 21 29 29 H 1.08996 * 109.47037 * 180.27931 * 1 2 3 30 30 H 1.09001 * 109.46810 * 300.27912 * 1 2 3 31 31 H 1.09000 * 109.47270 * 60.27862 * 1 2 3 32 32 H 1.08997 * 109.49676 * 294.43946 * 4 2 1 33 33 H 1.08992 * 109.49987 * 54.50698 * 4 2 1 34 34 H 0.97009 * 120.00019 * 334.99758 * 7 5 4 35 35 H 1.09003 * 109.46930 * 299.99844 * 10 8 7 36 36 H 1.09000 * 109.46972 * 60.00102 * 10 8 7 37 37 H 1.08997 * 109.40055 * 281.77598 * 12 11 10 38 38 H 1.08994 * 109.39598 * 41.50927 * 12 11 10 39 39 H 1.09005 * 109.82595 * 289.74309 * 13 12 11 40 40 H 1.09002 * 109.67076 * 169.23971 * 13 12 11 41 41 H 1.09002 * 109.41526 * 289.49464 * 15 14 13 42 42 H 1.09000 * 109.35632 * 169.66444 * 15 14 13 43 43 H 1.08993 * 109.49360 * 181.31878 * 18 5 4 44 44 H 1.08992 * 109.49668 * 301.41840 * 18 5 4 45 45 H 1.08998 * 109.50639 * 185.70385 * 19 18 5 46 46 H 1.09006 * 109.43076 * 65.41807 * 19 18 5 47 47 H 0.97006 * 119.99968 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0466 -0.7290 1.2444 5 6 3.5707 -0.8444 1.1671 6 1 3.9430 -1.3412 2.0632 7 7 4.1574 0.4945 1.0719 8 6 5.4216 0.7075 1.4878 9 8 6.0733 -0.2093 1.9414 10 6 6.0253 2.0848 1.3894 11 7 7.3977 2.0541 1.9012 12 6 7.6240 2.3186 3.3200 13 6 9.0046 1.7975 3.7319 14 8 9.9721 2.2807 2.7924 15 6 9.8295 1.6982 1.4946 16 6 8.3963 1.7901 1.0496 17 8 8.1357 1.6194 -0.1225 18 6 3.9602 -1.6609 -0.0673 19 6 3.4648 -0.9474 -1.3240 20 7 2.0226 -0.6979 -1.1955 21 6 1.1532 -1.1132 -2.1687 22 1 0.1400 -1.3818 -1.9088 23 6 1.5744 -1.1888 -3.4892 24 7 2.6853 -0.5887 -3.8610 25 14 0.5646 -2.1421 -4.7385 26 1 -0.6302 -2.7197 -4.0722 27 1 0.1320 -1.2283 -5.8262 28 1 1.3895 -3.2366 -5.3102 29 1 -0.3633 -1.0276 0.0050 30 1 -0.3633 0.5182 0.8875 31 1 -0.3634 0.5095 -0.8925 32 1 1.7690 -0.1674 2.1364 33 1 1.6076 -1.7255 1.2907 34 1 3.6360 1.2279 0.7095 35 1 6.0337 2.4041 0.3472 36 1 5.4328 2.7842 1.9791 37 1 7.5697 3.3920 3.5013 38 1 6.8581 1.8142 3.9089 39 1 9.0044 0.7074 3.7287 40 1 9.2510 2.1602 4.7298 41 1 10.1307 0.6513 1.5322 42 1 10.4635 2.2325 0.7871 43 1 5.0446 -1.7625 -0.1088 44 1 3.5037 -2.6488 -0.0090 45 1 3.6509 -1.5745 -2.1959 46 1 3.9911 0.0008 -1.4340 47 1 2.9794 -0.6412 -4.7839 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947395467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:42 Heat of formation + Delta-G solvation = -106.139433 kcal Electronic energy + Delta-G solvation = -29288.297764 eV Core-core repulsion = 25278.156141 eV Total energy + Delta-G solvation = -4010.141623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.96428 -40.88141 -39.20192 -38.72376 -36.44986 -35.83145 -34.10773 -33.01585 -31.72346 -31.17459 -29.99507 -28.04117 -27.13832 -26.66475 -24.89559 -23.82637 -22.51531 -22.05338 -20.27071 -20.13068 -18.77817 -18.62019 -18.31160 -17.98394 -17.14311 -16.93334 -16.61026 -16.46613 -16.02785 -15.79051 -15.66743 -15.50283 -15.25977 -14.91768 -14.65890 -14.53603 -14.38125 -14.13530 -13.99972 -13.37665 -13.19950 -13.05112 -12.88139 -12.80178 -12.67828 -12.48293 -12.35085 -12.30567 -12.15669 -11.98490 -11.71128 -11.63194 -11.42659 -11.17287 -11.00911 -10.55705 -10.53543 -10.03658 -9.86444 -8.60344 -7.83756 -5.30223 1.26975 1.44007 1.46975 1.56030 1.59590 1.66729 2.36214 2.51696 2.74954 3.27386 3.31858 3.59657 3.71321 3.79755 3.95802 4.01892 4.07303 4.13430 4.18832 4.19835 4.35286 4.40428 4.41282 4.48793 4.59639 4.64921 4.71523 4.77181 4.81525 4.93501 4.95605 5.01399 5.10953 5.11114 5.16375 5.39041 5.53556 5.55986 5.58961 5.72563 5.73227 5.74124 6.21314 6.43160 6.53900 6.89439 7.17653 7.21700 7.90721 8.42127 9.22515 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.003158 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.628834 B = 8865.123463 C = 9695.111478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.159 3.841 3 H 0.026 0.974 4 C -0.123 4.123 5 C 0.163 3.837 6 H 0.078 0.922 7 N -0.706 5.706 8 C 0.497 3.503 9 O -0.577 6.577 10 C 0.090 3.910 11 N -0.587 5.587 12 C 0.078 3.922 13 C 0.040 3.960 14 O -0.375 6.375 15 C 0.060 3.940 16 C 0.478 3.522 17 O -0.588 6.588 18 C -0.142 4.142 19 C 0.192 3.808 20 N -0.602 5.602 21 C -0.246 4.246 22 H 0.078 0.922 23 C -0.055 4.055 24 N -0.938 5.938 25 Si 0.959 3.041 26 H -0.262 1.262 27 H -0.295 1.295 28 H -0.299 1.299 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.408 0.592 35 H 0.101 0.899 36 H 0.155 0.845 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.151 0.849 41 H 0.099 0.901 42 H 0.144 0.856 43 H 0.035 0.965 44 H 0.061 0.939 45 H 0.039 0.961 46 H -0.005 1.005 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.432 8.202 20.525 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 H 0.044 0.956 4 C -0.162 4.162 5 C 0.058 3.942 6 H 0.096 0.904 7 N -0.359 5.359 8 C 0.283 3.717 9 O -0.457 6.457 10 C -0.036 4.036 11 N -0.319 5.319 12 C -0.043 4.043 13 C -0.036 4.036 14 O -0.293 6.293 15 C -0.019 4.019 16 C 0.267 3.733 17 O -0.469 6.469 18 C -0.182 4.182 19 C 0.066 3.934 20 N -0.326 5.326 21 C -0.377 4.377 22 H 0.095 0.905 23 C -0.250 4.250 24 N -0.584 5.584 25 Si 0.788 3.212 26 H -0.186 1.186 27 H -0.222 1.222 28 H -0.226 1.226 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.244 0.756 35 H 0.119 0.881 36 H 0.173 0.827 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.169 0.831 41 H 0.117 0.883 42 H 0.161 0.839 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.057 0.943 46 H 0.013 0.987 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.946 7.621 20.190 22.997 hybrid contribution -0.668 -0.690 -1.890 2.120 sum 7.278 6.931 18.299 20.878 Atomic orbital electron populations 1.21739 0.94379 1.01411 1.01225 1.20689 0.94426 0.93265 0.86249 0.95604 1.22225 0.92404 1.02514 0.99048 1.20724 0.94077 0.82640 0.96739 0.90356 1.46064 1.14209 1.12275 1.63304 1.21518 0.81593 0.91896 0.76679 1.90627 1.61285 1.46122 1.47710 1.21467 0.83860 0.94263 1.04051 1.47235 1.05239 1.68727 1.10681 1.22524 0.99677 1.03387 0.78755 1.23281 0.86057 0.99429 0.94824 1.88171 1.54967 1.66805 1.19360 1.22791 0.90344 1.02241 0.86538 1.21738 0.90396 0.75381 0.85780 1.90778 1.85129 1.51570 1.19456 1.22290 0.98522 0.99654 0.97715 1.20205 0.83799 0.95417 0.94023 1.44354 1.02368 1.65872 1.20003 1.19536 0.95599 1.36028 0.86489 0.90468 1.25828 0.99049 1.01092 0.99042 1.70202 1.26004 1.45942 1.16287 0.85327 0.78594 0.77966 0.79330 1.18599 1.22198 1.22598 0.93318 0.90184 0.94134 0.88594 0.90793 0.75564 0.88129 0.82728 0.87802 0.88509 0.92326 0.83104 0.88334 0.83862 0.94653 0.92012 0.94252 0.98741 0.94660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.96 71.98 0.57 -3.65 16 2 C 0.16 5.75 3.20 44.98 0.14 5.89 16 3 H 0.03 0.93 6.64 -2.39 -0.02 0.91 16 4 C -0.12 -3.59 5.08 30.67 0.16 -3.43 16 5 C 0.16 5.36 2.78 45.02 0.13 5.48 16 6 H 0.08 2.53 7.58 -2.38 -0.02 2.52 16 7 N -0.71 -21.24 4.27 -442.40 -1.89 -23.12 16 8 C 0.50 15.25 7.85 87.66 0.69 15.94 16 9 O -0.58 -21.53 16.09 -3.03 -0.05 -21.58 16 10 C 0.09 2.12 5.80 85.63 0.50 2.62 16 11 N -0.59 -13.57 2.32 -828.59 -1.92 -15.49 16 12 C 0.08 1.05 6.63 86.53 0.57 1.63 16 13 C 0.04 0.50 6.91 72.05 0.50 1.00 16 14 O -0.37 -6.42 10.85 -148.98 -1.62 -8.03 16 15 C 0.06 1.21 6.98 71.13 0.50 1.71 16 16 C 0.48 13.61 7.58 87.69 0.66 14.28 16 17 O -0.59 -22.85 16.36 -3.05 -0.05 -22.90 16 18 C -0.14 -5.88 5.76 30.53 0.18 -5.71 16 19 C 0.19 9.57 5.00 86.22 0.43 10.00 16 20 N -0.60 -28.79 2.99 -676.04 -2.02 -30.81 16 21 C -0.25 -13.03 8.57 84.03 0.72 -12.31 16 22 H 0.08 3.91 6.24 -2.91 -0.02 3.89 16 23 C -0.06 -3.10 4.94 84.86 0.42 -2.68 16 24 N -0.94 -56.92 11.24 21.65 0.24 -56.67 16 25 Si 0.96 45.45 29.58 68.60 2.03 47.48 16 26 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 29 H 0.05 1.63 7.43 -2.39 -0.02 1.61 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.48 7.63 -2.39 -0.02 1.47 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.41 11.25 6.87 -92.70 -0.64 10.62 16 35 H 0.10 2.82 7.23 -2.39 -0.02 2.80 16 36 H 0.16 2.07 8.04 -2.39 -0.02 2.05 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.10 1.16 8.13 -2.39 -0.02 1.14 16 39 H 0.06 0.86 8.10 -2.38 -0.02 0.84 16 40 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.04 2.30 6.16 -2.39 -0.01 2.28 16 46 H -0.01 -0.29 7.74 -2.38 -0.02 -0.31 16 47 H 0.24 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -79.73 369.41 1.23 -78.51 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.34 Total: 21.87 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: 6.16 Total: 30.76 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -5.59 Total: -126.10 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -1.72 Total: -52.51 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -79.73 1.23 -78.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947395467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.633 kcal (2) G-P(sol) polarization free energy of solvation -79.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds