Wall clock time and date at job start Tue Mar 31 2020 06:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21286 * 120.00462 * 2 1 4 4 N 1.34783 * 120.00174 * 179.97438 * 2 1 3 5 5 C 1.47155 * 120.98022 * 174.64582 * 4 2 1 6 6 C 1.53296 * 108.38006 * 129.44482 * 5 4 2 7 7 O 1.42967 * 109.22393 * 52.30275 * 6 5 4 8 8 C 1.42964 * 114.16551 * 297.41672 * 7 6 5 9 9 H 1.08996 * 109.51377 * 302.65886 * 8 7 6 10 10 C 1.50696 * 109.51315 * 182.50481 * 8 7 6 11 11 O 1.21278 * 119.99917 * 355.25223 * 10 8 7 12 12 N 1.34779 * 120.00219 * 175.25828 * 10 8 7 13 13 C 1.46501 * 120.00346 * 180.02562 * 12 10 8 14 14 H 1.09000 * 109.46630 * 34.99199 * 13 12 10 15 15 C 1.52993 * 109.46833 * 274.99782 * 13 12 10 16 16 C 1.52994 * 109.47195 * 154.99393 * 13 12 10 17 17 C 1.53947 * 113.74191 * 276.67548 * 16 13 12 18 18 N 1.47584 * 86.11646 * 222.04866 * 17 16 13 19 19 C 1.36936 * 134.49063 * 204.64444 * 18 17 16 20 20 H 1.08009 * 119.99778 * 184.95527 * 19 18 17 21 21 C 1.38807 * 120.00495 * 4.95804 * 19 18 17 22 22 N 1.31625 * 119.99812 * 354.94759 * 21 19 18 23 23 Si 1.86802 * 120.00249 * 174.94683 * 21 19 18 24 24 H 1.48499 * 109.46863 * 95.00036 * 23 21 19 25 25 H 1.48502 * 109.47200 * 214.99531 * 23 21 19 26 26 H 1.48499 * 109.47082 * 334.99991 * 23 21 19 27 27 C 1.47577 * 91.01502 * 24.63778 * 18 17 16 28 28 C 1.47150 * 120.97876 * 354.62807 * 4 2 1 29 29 H 1.08993 * 109.47245 * 274.73219 * 1 2 3 30 30 H 1.09005 * 109.47004 * 34.73413 * 1 2 3 31 31 H 1.09002 * 109.46921 * 154.72804 * 1 2 3 32 32 H 1.08997 * 109.68025 * 249.16463 * 5 4 2 33 33 H 1.09000 * 109.68418 * 9.72453 * 5 4 2 34 34 H 1.09005 * 109.50893 * 172.22231 * 6 5 4 35 35 H 1.08997 * 109.51750 * 292.37560 * 6 5 4 36 36 H 0.97003 * 119.99538 * 359.97438 * 12 10 8 37 37 H 1.09000 * 109.47741 * 59.99813 * 15 13 12 38 38 H 1.09002 * 109.47078 * 179.97438 * 15 13 12 39 39 H 1.08997 * 109.47220 * 299.99918 * 15 13 12 40 40 H 1.08996 * 112.94630 * 48.40921 * 16 13 12 41 41 H 1.09000 * 113.77097 * 336.34869 * 17 16 13 42 42 H 1.09001 * 113.77080 * 107.74660 * 17 16 13 43 43 H 0.96997 * 120.00227 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.77536 * 221.05596 * 27 18 17 45 45 H 1.09002 * 113.86740 * 89.67640 * 27 18 17 46 46 H 1.09000 * 109.68111 * 350.27737 * 28 4 2 47 47 H 1.08998 * 109.68231 * 110.83475 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6475 -1.1952 -0.1172 6 6 4.2060 -2.0745 1.0074 7 8 3.5432 -3.3411 0.9879 8 6 2.1365 -3.2693 1.2323 9 1 1.9581 -2.7881 2.1939 10 6 1.5569 -4.6603 1.2492 11 8 2.2591 -5.6130 0.9847 12 7 0.2581 -4.8455 1.5580 13 6 -0.3052 -6.1978 1.5750 14 1 0.4479 -6.9006 1.9314 15 6 -0.7377 -6.5878 0.1602 16 6 -1.5179 -6.2335 2.5071 17 6 -1.1538 -6.4231 3.9909 18 7 -2.2946 -7.3576 4.0477 19 6 -3.1197 -7.8052 5.0446 20 1 -3.8525 -8.5709 4.8362 21 6 -3.0146 -7.2750 6.3231 22 7 -2.0578 -6.4153 6.6024 23 14 -4.2309 -7.7814 7.6474 24 1 -3.6583 -8.8951 8.4456 25 1 -4.5043 -6.6243 8.5371 26 1 -5.4969 -8.2275 7.0122 27 6 -2.1890 -7.6159 2.5985 28 6 1.4719 -2.4512 0.1192 29 1 -0.3633 0.0848 1.0241 30 1 -0.3633 0.8446 -0.5856 31 1 -0.3633 -0.9293 -0.4387 32 1 3.9303 -1.6119 -1.0838 33 1 4.0427 -0.1837 -0.0230 34 1 5.2757 -2.2210 0.8578 35 1 4.0352 -1.5890 1.9682 36 1 -0.3035 -4.0835 1.7698 37 1 0.1262 -6.5624 -0.5039 38 1 -1.1564 -7.5941 0.1727 39 1 -1.4907 -5.8850 -0.1962 40 1 -2.2172 -5.4173 2.3260 41 1 -0.1866 -6.9004 4.1484 42 1 -1.2902 -5.5260 4.5948 43 1 -1.9841 -6.0450 7.4959 44 1 -3.1519 -7.6713 2.0907 45 1 -1.5264 -8.4435 2.3452 46 1 0.4264 -2.2714 0.3699 47 1 1.5357 -2.9943 -0.8236 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970825906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:17 Heat of formation + Delta-G solvation = -50.162393 kcal Electronic energy + Delta-G solvation = -28415.703996 eV Core-core repulsion = 24407.989719 eV Total energy + Delta-G solvation = -4007.714277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95838 -39.77735 -38.60199 -37.81530 -35.30447 -34.78349 -32.72004 -32.09232 -30.85499 -29.87952 -27.85908 -27.56476 -25.39986 -24.74683 -23.99275 -22.96995 -21.42206 -20.43740 -19.73942 -19.15366 -17.80540 -17.24136 -17.05301 -16.72063 -16.49913 -15.99101 -15.74392 -15.46157 -14.93379 -14.85970 -14.49218 -14.02278 -13.96225 -13.87517 -13.67694 -13.42841 -13.06932 -12.90870 -12.50393 -12.45973 -12.37652 -12.16673 -11.98546 -11.72037 -11.40259 -11.33410 -11.26904 -10.96771 -10.73631 -10.61015 -10.43140 -10.24319 -10.00826 -9.81291 -9.72172 -9.47404 -9.03442 -8.92283 -8.78038 -6.90966 -5.80132 -3.12346 2.16034 2.33317 2.60653 2.68873 3.36611 3.41883 3.43875 3.69968 4.08374 4.18519 4.41873 4.43972 4.52581 4.61720 4.74125 4.77529 4.83869 4.99558 5.03057 5.06508 5.19159 5.23138 5.24282 5.27045 5.44202 5.47084 5.48710 5.58871 5.73065 5.87172 5.88454 5.95949 6.17595 6.29735 6.34934 6.50295 6.57997 6.63926 6.75413 6.85246 7.19466 7.33618 7.50273 7.53142 7.69277 7.95655 8.20337 9.01657 9.68065 10.57031 11.36718 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.002687 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.617093 B =10419.219743 C =10926.569689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.518 3.482 3 O -0.544 6.544 4 N -0.618 5.618 5 C 0.074 3.926 6 C 0.047 3.953 7 O -0.348 6.348 8 C 0.059 3.941 9 H 0.092 0.908 10 C 0.522 3.478 11 O -0.515 6.515 12 N -0.714 5.714 13 C 0.152 3.848 14 H 0.089 0.911 15 C -0.159 4.159 16 C -0.146 4.146 17 C 0.167 3.833 18 N -0.612 5.612 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.130 3.870 28 C 0.084 3.916 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.025 0.975 42 H 0.073 0.927 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.035 0.965 46 H 0.105 0.895 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 11.438 -15.908 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.307 3.693 3 O -0.421 6.421 4 N -0.354 5.354 5 C -0.049 4.049 6 C -0.031 4.031 7 O -0.265 6.265 8 C -0.003 4.003 9 H 0.110 0.890 10 C 0.305 3.695 11 O -0.389 6.389 12 N -0.366 5.366 13 C 0.047 3.953 14 H 0.107 0.893 15 C -0.217 4.217 16 C -0.166 4.166 17 C 0.041 3.959 18 N -0.338 5.338 19 C -0.351 4.351 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.004 3.996 28 C -0.040 4.040 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.233 0.767 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.043 0.957 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.123 0.877 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.559 11.116 -15.802 20.746 hybrid contribution -0.918 0.195 1.036 1.398 sum 6.641 11.311 -14.766 19.750 Atomic orbital electron populations 1.22003 0.91204 1.05116 1.05484 1.20907 0.90823 0.82626 0.74920 1.90722 1.70729 1.30819 1.49844 1.48206 1.07442 1.05986 1.73718 1.22367 0.79835 1.02724 0.99959 1.23089 0.97933 0.84268 0.97798 1.88135 1.17578 1.28372 1.92404 1.22317 0.84181 0.94681 0.99130 0.89048 1.19791 0.82394 0.89547 0.77767 1.90740 1.59219 1.42103 1.46797 1.46027 1.09706 1.10522 1.70358 1.21144 0.95947 0.82614 0.95557 0.89304 1.22137 1.01092 1.02030 0.96447 1.23813 0.95584 0.99715 0.97465 1.22334 0.89889 0.94690 0.88956 1.45969 1.33700 1.51470 1.02683 1.19028 1.10542 1.17170 0.88374 0.90311 1.24788 0.98747 0.99524 0.97299 1.69820 1.32854 1.33812 1.20279 0.86120 0.80599 0.77454 0.81701 1.21680 1.21597 1.20555 1.22492 0.97010 0.93127 0.86996 1.22393 0.97264 0.84271 1.00036 0.88233 0.88501 0.89772 0.90307 0.87788 0.86884 0.92202 0.76719 0.92731 0.91273 0.92643 0.89306 0.95738 0.90830 0.93685 0.93704 0.94744 0.87720 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 9.47 36.00 0.34 -0.67 16 2 C 0.52 4.87 7.81 -10.99 -0.09 4.79 16 3 O -0.54 -7.27 16.57 5.55 0.09 -7.17 16 4 N -0.62 -5.21 3.02 -172.27 -0.52 -5.73 16 5 C 0.07 0.60 6.65 -3.53 -0.02 0.58 16 6 C 0.05 0.39 6.98 37.31 0.26 0.65 16 7 O -0.35 -4.11 9.92 -55.07 -0.55 -4.66 16 8 C 0.06 0.60 3.19 -27.73 -0.09 0.51 16 9 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 10 C 0.52 6.74 7.14 -10.99 -0.08 6.66 16 11 O -0.51 -8.98 16.17 -14.28 -0.23 -9.21 16 12 N -0.71 -8.14 5.04 -53.81 -0.27 -8.41 16 13 C 0.15 2.09 2.42 -67.94 -0.16 1.93 16 14 H 0.09 1.48 7.37 -51.93 -0.38 1.10 16 15 C -0.16 -1.86 9.29 37.15 0.35 -1.51 16 16 C -0.15 -2.39 3.50 -89.70 -0.31 -2.70 16 17 C 0.17 3.71 7.15 -2.97 -0.02 3.69 16 18 N -0.61 -15.19 3.70 -177.90 -0.66 -15.85 16 19 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 20 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -26.79 11.35 55.49 0.63 -26.16 16 23 Si 0.91 21.80 29.56 -169.99 -5.02 16.78 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.13 2.48 7.56 -2.98 -0.02 2.45 16 28 C 0.08 0.61 5.56 -3.53 -0.02 0.59 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.31 6.28 -51.93 -0.33 -0.01 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.88 7.06 -51.93 -0.37 0.52 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.40 3.42 8.60 -40.82 -0.35 3.07 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.80 7.43 -51.93 -0.39 0.42 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.02 0.58 7.96 -51.93 -0.41 0.17 16 42 H 0.07 1.81 7.05 -51.93 -0.37 1.44 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 46 H 0.10 0.48 5.80 -51.93 -0.30 0.18 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -36.52 380.86 -8.42 -44.95 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.51 Total: -0.62 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: -0.13 Total: 10.35 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.82 Total: -56.15 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.69 Total: -21.05 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.52 -8.42 -44.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970825906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.213 kcal (2) G-P(sol) polarization free energy of solvation -36.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds