Wall clock time and date at job start Tue Mar 31 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.67212 * 2 1 4 4 C 1.53062 * 109.67358 * 120.50136 * 2 1 3 5 5 C 1.50177 * 109.89127 * 168.63396 * 4 2 1 6 6 O 1.21283 * 118.24967 * 162.38954 * 5 4 2 7 7 N 1.33358 * 123.50679 * 342.41560 * 5 4 2 8 8 C 1.45750 * 124.10630 * 2.22024 * 7 5 4 9 9 H 1.08997 * 109.29879 * 101.03205 * 8 7 5 10 10 C 1.50696 * 109.30097 * 220.61555 * 8 7 5 11 11 O 1.21281 * 120.00489 * 20.41663 * 10 8 7 12 12 N 1.34787 * 119.99979 * 200.41662 * 10 8 7 13 13 C 1.46493 * 119.99930 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47080 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.67867 * 300.76025 * 14 13 12 16 16 C 1.53299 * 109.68277 * 180.24391 * 14 13 12 17 17 O 1.42960 * 109.22192 * 187.97785 * 16 14 13 18 18 C 1.42956 * 114.16862 * 62.58138 * 17 16 14 19 19 C 1.53298 * 109.26563 * 297.39304 * 18 17 16 20 20 N 1.47153 * 109.67967 * 61.32017 * 14 13 12 21 21 C 1.36940 * 120.98236 * 350.27334 * 20 14 13 22 22 H 1.08001 * 119.99433 * 31.05853 * 21 20 14 23 23 C 1.38809 * 120.00142 * 211.05279 * 21 20 14 24 24 N 1.31620 * 120.00058 * 10.80742 * 23 21 20 25 25 Si 1.86804 * 119.99912 * 190.80738 * 23 21 20 26 26 H 1.48498 * 109.47143 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47217 * 120.00099 * 25 23 21 28 28 H 1.48501 * 109.47147 * 239.99932 * 25 23 21 29 29 C 1.52920 * 110.32487 * 340.82585 * 8 7 5 30 30 H 1.09006 * 109.47184 * 299.50011 * 1 2 3 31 31 H 1.09004 * 109.47651 * 59.49908 * 1 2 3 32 32 H 1.08996 * 109.47487 * 179.50268 * 1 2 3 33 33 H 1.08996 * 109.40376 * 48.50083 * 4 2 1 34 34 H 1.09006 * 109.33000 * 288.71064 * 4 2 1 35 35 H 0.97002 * 117.94664 * 182.24562 * 7 5 4 36 36 H 0.96999 * 119.99836 * 0.02562 * 12 10 8 37 37 H 1.09001 * 109.47059 * 60.00247 * 13 12 10 38 38 H 1.09000 * 109.47589 * 300.00583 * 13 12 10 39 39 H 1.08999 * 109.51015 * 68.04566 * 16 14 13 40 40 H 1.09005 * 109.50831 * 307.90320 * 16 14 13 41 41 H 1.09001 * 109.51693 * 57.33871 * 18 17 16 42 42 H 1.08996 * 109.51296 * 177.44468 * 18 17 16 43 43 H 1.08996 * 109.68445 * 172.05154 * 19 18 17 44 44 H 1.08997 * 109.68133 * 292.60817 * 19 18 17 45 45 H 0.97001 * 119.99914 * 179.97438 * 24 23 21 46 46 H 1.08998 * 109.60616 * 170.60644 * 29 8 7 47 47 H 1.08997 * 109.60378 * 291.09926 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0453 -0.7315 1.2418 5 6 3.5210 -0.9790 1.1135 6 8 4.1476 -1.2465 2.1169 7 7 4.1794 -0.9198 -0.0447 8 6 3.5642 -0.5643 -1.3173 9 1 3.7968 0.4743 -1.5522 10 6 4.1128 -1.4552 -2.4018 11 8 4.6308 -2.5132 -2.1134 12 7 4.0279 -1.0762 -3.6925 13 6 4.5617 -1.9420 -4.7467 14 6 4.3397 -1.2826 -6.1094 15 1 3.2741 -1.1167 -6.2676 16 6 4.8912 -2.1876 -7.2170 17 8 4.8491 -1.4867 -8.4622 18 6 5.6617 -0.3111 -8.4999 19 6 5.1500 0.6910 -7.4588 20 7 5.0552 0.0022 -6.1607 21 6 5.6169 0.5417 -5.0343 22 1 5.9932 -0.1053 -4.2557 23 6 5.7027 1.9199 -4.8934 24 7 5.0613 2.7082 -5.7298 25 14 6.7284 2.6560 -3.5165 26 1 7.3446 1.5643 -2.7204 27 1 7.7968 3.5087 -4.0967 28 1 5.8597 3.4801 -2.6383 29 6 2.0468 -0.7374 -1.2404 30 1 -0.3634 0.5061 0.8945 31 1 -0.3634 0.5216 -0.8855 32 1 -0.3634 -1.0276 -0.0089 33 1 1.5258 -1.6844 1.3424 34 1 1.8561 -0.1209 2.1248 35 1 5.1271 -1.1266 -0.0399 36 1 3.6139 -0.2299 -3.9232 37 1 4.0500 -2.9041 -4.7206 38 1 5.6291 -2.0939 -4.5865 39 1 4.2836 -3.0899 -7.2862 40 1 5.9216 -2.4586 -6.9863 41 1 6.6948 -0.5752 -8.2740 42 1 5.6089 0.1362 -9.4924 43 1 5.8446 1.5275 -7.3820 44 1 4.1661 1.0561 -7.7532 45 1 5.1210 3.6713 -5.6311 46 1 1.5847 -0.3142 -2.1323 47 1 1.8028 -1.7972 -1.1670 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050920744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:33 Heat of formation + Delta-G solvation = -120.904782 kcal Electronic energy + Delta-G solvation = -29476.389600 eV Core-core repulsion = 25465.607703 eV Total energy + Delta-G solvation = -4010.781897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87192 -40.57891 -39.81698 -37.76481 -36.94576 -35.36627 -34.98560 -33.35418 -32.23006 -30.95942 -29.00301 -28.79017 -27.18950 -25.39025 -25.15844 -23.33731 -22.48166 -21.52324 -21.23378 -20.24743 -19.05054 -18.35199 -17.89700 -17.71704 -17.42015 -17.02484 -16.40083 -16.25259 -16.13988 -16.02138 -15.65100 -15.45860 -15.32651 -14.97894 -14.81094 -14.61226 -14.37786 -14.14559 -13.57273 -13.41878 -13.12121 -12.98127 -12.91560 -12.75981 -12.73368 -12.50569 -12.40636 -12.12738 -11.99211 -11.89016 -11.84816 -11.66720 -11.30144 -11.20657 -10.85270 -10.63811 -10.56170 -10.19270 -9.89966 -8.61061 -7.86283 -5.36879 1.38559 1.48272 1.48628 1.51085 1.52468 2.02852 2.40172 2.46394 3.04614 3.29648 3.44019 3.49656 3.58927 3.62475 3.71162 3.99467 4.04595 4.16127 4.24173 4.35306 4.45175 4.48796 4.61038 4.64875 4.65467 4.67403 4.67710 4.75609 4.78628 4.82834 4.95626 5.02125 5.13350 5.14645 5.31138 5.32523 5.46346 5.51498 5.55974 5.65343 5.70355 6.22187 6.31071 6.38439 6.62023 7.05452 7.11515 7.23455 7.77639 8.34167 9.18044 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.004156 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.984021 B = 6734.962038 C = 7538.665399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.085 0.915 4 C -0.124 4.124 5 C 0.518 3.482 6 O -0.608 6.608 7 N -0.700 5.700 8 C 0.126 3.874 9 H 0.107 0.893 10 C 0.500 3.500 11 O -0.584 6.584 12 N -0.685 5.685 13 C 0.141 3.859 14 C 0.128 3.872 15 H 0.044 0.956 16 C 0.056 3.944 17 O -0.397 6.397 18 C 0.045 3.955 19 C 0.149 3.851 20 N -0.605 5.605 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.026 4.026 24 N -0.923 5.923 25 Si 0.937 3.063 26 H -0.280 1.280 27 H -0.299 1.299 28 H -0.284 1.284 29 C -0.117 4.117 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.394 0.606 36 H 0.416 0.584 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.118 0.882 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.010 0.990 45 H 0.250 0.750 46 H 0.110 0.890 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.124 -4.665 3.635 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.104 0.896 4 C -0.163 4.163 5 C 0.308 3.692 6 O -0.490 6.490 7 N -0.349 5.349 8 C 0.017 3.983 9 H 0.125 0.875 10 C 0.285 3.715 11 O -0.465 6.465 12 N -0.335 5.335 13 C 0.017 3.983 14 C 0.021 3.979 15 H 0.062 0.938 16 C -0.023 4.023 17 O -0.316 6.316 18 C -0.033 4.033 19 C 0.024 3.976 20 N -0.331 5.331 21 C -0.370 4.370 22 H 0.086 0.914 23 C -0.223 4.223 24 N -0.568 5.568 25 Si 0.767 3.233 26 H -0.205 1.205 27 H -0.226 1.226 28 H -0.211 1.211 29 C -0.155 4.155 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.229 0.771 36 H 0.253 0.747 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.136 0.864 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.121 0.879 43 H 0.083 0.917 44 H 0.028 0.972 45 H 0.060 0.940 46 H 0.129 0.871 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.816 -5.371 4.159 11.938 hybrid contribution 1.573 1.203 0.545 2.053 sum -8.244 -4.169 4.704 10.367 Atomic orbital electron populations 1.21770 0.91743 1.03006 1.03246 1.21245 0.98258 0.99515 0.91657 0.89639 1.21817 0.88365 1.04586 1.01532 1.20952 0.92044 0.74690 0.81519 1.90723 1.69804 1.51872 1.36620 1.45397 1.13454 1.69123 1.06954 1.21025 0.96684 0.98730 0.81857 0.87496 1.20961 0.79392 0.86707 0.84412 1.90677 1.46924 1.25629 1.83251 1.45941 1.58740 1.23933 1.04920 1.21135 0.98519 0.92948 0.85690 1.21548 0.95592 0.87333 0.93388 0.93848 1.23008 1.00848 0.94605 0.83844 1.87809 1.69250 1.40022 1.34500 1.23217 0.93247 0.86340 1.00477 1.21251 0.98268 0.93898 0.84188 1.44311 1.62881 1.20973 1.04922 1.19275 1.31107 0.89174 0.97424 0.91396 1.25515 1.00064 0.97266 0.99489 1.70083 1.44299 1.03031 1.39433 0.85682 0.78900 0.78392 0.80288 1.20540 1.22629 1.21088 1.21981 0.89059 1.02902 1.01515 0.91108 0.91336 0.91682 0.86592 0.86722 0.77136 0.74655 0.89956 0.93358 0.86436 0.93558 0.94070 0.87906 0.91685 0.97197 0.94009 0.87138 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.20 71.98 0.66 -0.83 16 2 C -0.09 -1.33 2.80 -10.68 -0.03 -1.36 16 3 H 0.09 1.31 8.13 -2.39 -0.02 1.29 16 4 C -0.12 -2.27 5.35 29.70 0.16 -2.11 16 5 C 0.52 14.88 7.71 87.71 0.68 15.56 16 6 O -0.61 -22.67 17.78 -3.04 -0.05 -22.72 16 7 N -0.70 -20.37 4.79 -450.24 -2.16 -22.52 16 8 C 0.13 3.23 3.46 44.36 0.15 3.38 16 9 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 10 C 0.50 15.89 6.98 87.65 0.61 16.50 16 11 O -0.58 -22.47 16.39 -3.03 -0.05 -22.52 16 12 N -0.69 -21.72 3.80 -463.06 -1.76 -23.48 16 13 C 0.14 4.55 4.44 86.38 0.38 4.93 16 14 C 0.13 4.37 3.20 44.97 0.14 4.51 16 15 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 16 C 0.06 1.70 6.29 72.08 0.45 2.15 16 17 O -0.40 -13.73 10.74 -148.98 -1.60 -15.34 16 18 C 0.04 1.58 6.98 72.08 0.50 2.08 16 19 C 0.15 6.40 5.38 86.33 0.46 6.86 16 20 N -0.60 -25.57 3.03 -673.43 -2.04 -27.61 16 21 C -0.24 -10.98 7.11 84.03 0.60 -10.38 16 22 H 0.07 3.18 5.81 -2.91 -0.02 3.16 16 23 C -0.03 -1.27 5.06 84.86 0.43 -0.84 16 24 N -0.92 -47.41 11.13 21.65 0.24 -47.17 16 25 Si 0.94 40.77 29.57 68.60 2.03 42.80 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 29 C -0.12 -2.14 4.57 30.66 0.14 -2.00 16 30 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.12 1.82 8.10 -2.39 -0.02 1.80 16 34 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.39 12.83 8.45 -92.71 -0.78 12.05 16 36 H 0.42 13.54 7.38 -92.71 -0.68 12.86 16 37 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.05 1.77 7.52 -2.39 -0.02 1.75 16 39 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.06 3.15 6.33 -2.39 -0.02 3.13 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.25 12.72 8.31 -92.71 -0.77 11.95 16 46 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -64.88 371.06 -0.52 -65.40 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -0.48 Total: 34.70 kcal Atomic # 6 Polarization: 33.11 SS G_CDS: 5.35 Total: 38.46 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -5.72 Total: -120.78 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -1.70 Total: -60.58 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -64.88 -0.52 -65.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050920744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.502 kcal (2) G-P(sol) polarization free energy of solvation -64.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds