Wall clock time and date at job start Tue Mar 31 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 119.99813 * 2 1 4 4 N 1.34772 * 120.00392 * 179.72438 * 2 1 3 5 5 C 1.47155 * 120.97999 * 354.31725 * 4 2 1 6 6 C 1.53295 * 108.38421 * 129.44440 * 5 4 2 7 7 O 1.42964 * 109.22473 * 52.29734 * 6 5 4 8 8 C 1.42957 * 114.16843 * 297.42138 * 7 6 5 9 9 C 1.47152 * 120.98372 * 174.03695 * 4 2 1 10 10 H 1.08993 * 109.68450 * 110.83398 * 9 4 2 11 11 C 1.50703 * 109.67969 * 350.27565 * 9 4 2 12 12 O 1.21280 * 120.00210 * 302.31880 * 11 9 4 13 13 N 1.34781 * 119.99481 * 122.31530 * 11 9 4 14 14 C 1.46501 * 119.99817 * 179.97438 * 13 11 9 15 15 H 1.09010 * 110.63678 * 34.30338 * 14 13 11 16 16 C 1.54320 * 110.72430 * 271.16133 * 14 13 11 17 17 N 1.47020 * 107.27210 * 219.44485 * 16 14 13 18 18 C 1.36931 * 125.64759 * 178.90368 * 17 16 14 19 19 H 1.08003 * 120.00305 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00245 * 0.02587 * 18 17 16 21 21 N 1.31619 * 119.99950 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00297 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47416 * 89.99252 * 22 20 18 24 24 H 1.48503 * 109.47137 * 209.99854 * 22 20 18 25 25 H 1.48506 * 109.46934 * 329.99657 * 22 20 18 26 26 C 1.47425 * 108.70153 * 358.93572 * 17 16 14 27 27 C 1.55126 * 104.94191 * 24.00723 * 26 17 16 28 28 H 1.09004 * 110.93560 * 81.21050 * 27 26 17 29 29 C 1.53002 * 111.16115 * 205.12553 * 27 26 17 30 30 H 1.09004 * 109.46645 * 264.88081 * 1 2 3 31 31 H 1.08997 * 109.47480 * 24.88652 * 1 2 3 32 32 H 1.09006 * 109.46928 * 144.88885 * 1 2 3 33 33 H 1.09007 * 109.67854 * 249.15976 * 5 4 2 34 34 H 1.08992 * 109.68211 * 9.67919 * 5 4 2 35 35 H 1.09003 * 109.51232 * 172.22585 * 6 5 4 36 36 H 1.09006 * 109.50978 * 292.37746 * 6 5 4 37 37 H 1.08998 * 109.51013 * 182.50459 * 8 7 6 38 38 H 1.09001 * 109.51171 * 302.65612 * 8 7 6 39 39 H 0.96996 * 119.99967 * 0.02562 * 13 11 9 40 40 H 1.08995 * 109.87940 * 338.86076 * 16 14 13 41 41 H 1.09006 * 109.88452 * 99.86829 * 16 14 13 42 42 H 0.97002 * 120.00257 * 180.02562 * 21 20 18 43 43 H 1.09006 * 110.36300 * 142.96838 * 26 17 16 44 44 H 1.08994 * 110.36997 * 265.17811 * 26 17 16 45 45 H 1.08993 * 109.46906 * 172.16573 * 29 27 26 46 46 H 1.08995 * 109.47393 * 292.17349 * 29 27 26 47 47 H 1.09001 * 109.46866 * 52.17151 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 1.4725 -2.4502 0.1367 6 6 1.9496 -3.3825 -0.9827 7 8 3.3780 -3.4415 -0.9694 8 6 4.0180 -2.1894 -1.2267 9 6 3.6463 -1.1963 -0.1253 10 1 4.0929 -1.5135 0.8170 11 6 4.1507 0.1761 -0.4903 12 8 3.7461 0.7238 -1.4939 13 7 5.0514 0.7948 0.2987 14 6 5.5422 2.1287 -0.0563 15 1 4.7559 2.7125 -0.5351 16 6 6.7817 2.0292 -0.9702 17 7 7.7203 3.0794 -0.5486 18 6 8.9538 3.3136 -1.0952 19 1 9.5710 4.1132 -0.7127 20 6 9.4110 2.5235 -2.1409 21 7 8.6591 1.5488 -2.6067 22 14 11.0940 2.8426 -2.8860 23 1 12.1151 2.0425 -2.1634 24 1 11.0828 2.4530 -4.3190 25 1 11.4219 4.2862 -2.7681 26 6 7.1138 3.8380 0.5605 27 6 6.0868 2.8646 1.1963 28 1 6.5789 2.1682 1.8753 29 6 4.9711 3.6289 1.9118 30 1 -0.3633 -0.0917 1.0236 31 1 -0.3634 0.9322 -0.4324 32 1 -0.3633 -0.8407 -0.5911 33 1 1.6966 -2.8959 1.1060 34 1 0.3986 -2.2875 0.0470 35 1 1.5424 -4.3810 -0.8234 36 1 1.6101 -2.9993 -1.9451 37 1 5.0988 -2.3295 -1.2428 38 1 3.6859 -1.8019 -2.1899 39 1 5.3752 0.3566 1.1012 40 1 7.2468 1.0498 -0.8585 41 1 6.4900 2.1846 -2.0089 42 1 8.9788 0.9964 -3.3372 43 1 7.8746 4.1175 1.2894 44 1 6.6085 4.7260 0.1811 45 1 4.1960 2.9302 2.2264 46 1 5.3803 4.1354 2.7859 47 1 4.5421 4.3657 1.2327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080968732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:27 Heat of formation + Delta-G solvation = -67.601838 kcal Electronic energy + Delta-G solvation = -29719.023805 eV Core-core repulsion = 25710.553297 eV Total energy + Delta-G solvation = -4008.470508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.99893 -38.81078 -38.37553 -37.17495 -34.94709 -33.72678 -32.60162 -32.01098 -30.27597 -30.04301 -28.07672 -27.41631 -25.56924 -24.84962 -23.45034 -22.40504 -21.08228 -20.00589 -19.69186 -18.95484 -17.50957 -16.97556 -16.79644 -16.64899 -16.07023 -15.69850 -15.42597 -15.12414 -14.81961 -14.73057 -14.01043 -13.80313 -13.73323 -13.58785 -13.29104 -12.97568 -12.65469 -12.60679 -12.49246 -12.28249 -12.24821 -11.80124 -11.65191 -11.57161 -11.26492 -11.21097 -10.94204 -10.72308 -10.49742 -10.45061 -10.30239 -9.86989 -9.82913 -9.62734 -9.60797 -9.21301 -8.80826 -8.54369 -8.23715 -6.75579 -5.62490 -2.97338 2.41028 2.58192 3.32215 3.40211 3.44636 3.49369 3.51892 3.75177 4.35574 4.44718 4.56111 4.63309 4.76792 4.82310 4.90664 4.99405 5.02299 5.13787 5.18998 5.27383 5.35995 5.43799 5.50267 5.56840 5.61534 5.63638 5.67915 5.88548 6.09162 6.12505 6.13390 6.30091 6.39594 6.49996 6.62523 6.72547 6.78791 6.96324 7.08913 7.13919 7.65266 7.69442 7.93400 8.05268 8.09730 8.33232 8.83902 9.28954 9.89590 10.55579 11.48107 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.003773 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.660105 B = 7418.727628 C = 8703.123019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.505 3.495 3 O -0.497 6.497 4 N -0.612 5.612 5 C 0.075 3.925 6 C 0.042 3.958 7 O -0.373 6.373 8 C 0.061 3.939 9 C 0.094 3.906 10 H 0.092 0.908 11 C 0.536 3.464 12 O -0.522 6.522 13 N -0.707 5.707 14 C 0.130 3.870 15 H 0.087 0.913 16 C 0.174 3.826 17 N -0.606 5.606 18 C -0.229 4.229 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.141 3.859 27 C -0.113 4.113 28 H 0.074 0.926 29 C -0.134 4.134 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.390 0.610 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.251 0.749 43 H 0.041 0.959 44 H 0.021 0.979 45 H 0.050 0.950 46 H 0.050 0.950 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.234 -10.782 9.505 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.293 3.707 3 O -0.370 6.370 4 N -0.351 5.351 5 C -0.048 4.048 6 C -0.036 4.036 7 O -0.291 6.291 8 C -0.017 4.017 9 C -0.013 4.013 10 H 0.110 0.890 11 C 0.321 3.679 12 O -0.397 6.397 13 N -0.357 5.357 14 C 0.025 3.975 15 H 0.105 0.895 16 C 0.048 3.952 17 N -0.333 5.333 18 C -0.357 4.357 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.015 3.985 27 C -0.133 4.133 28 H 0.093 0.907 29 C -0.191 4.191 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.223 0.777 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.981 -10.008 8.609 22.307 hybrid contribution 0.852 -0.053 -0.027 0.855 sum -17.129 -10.061 8.582 21.639 Atomic orbital electron populations 1.21906 0.91528 1.05081 1.04242 1.20870 0.90672 0.83043 0.76112 1.90845 1.68816 1.30507 1.46830 1.48071 1.05452 1.06565 1.75011 1.22504 0.97985 0.83974 1.00339 1.23026 0.82201 1.00484 0.97842 1.88000 1.18330 1.30410 1.92387 1.22821 0.99304 0.82911 0.96635 1.21781 0.81864 0.96481 1.01187 0.89018 1.19352 0.78883 0.85555 0.84125 1.90696 1.56951 1.65279 1.26797 1.45695 1.44085 1.19088 1.26846 1.22395 0.97703 0.81520 0.95897 0.89459 1.21468 0.85674 0.92890 0.95160 1.44410 1.16279 1.35327 1.37254 1.19058 0.91111 1.13056 1.12482 0.90387 1.24813 0.98564 0.98173 0.98894 1.69989 1.36247 1.21451 1.28972 0.86130 0.83687 0.77585 0.78423 1.21680 1.21710 1.20717 1.21614 0.93329 0.93242 0.90336 1.22627 0.96433 0.98261 0.95996 0.90727 1.21650 0.97796 0.99901 0.99792 0.89067 0.88743 0.90098 0.90214 0.88273 0.87468 0.92282 0.86599 0.91037 0.77651 0.93350 0.93606 0.93825 0.94117 0.96134 0.93074 0.93109 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.32 36.01 0.34 -1.02 16 2 C 0.50 6.74 7.43 -10.99 -0.08 6.66 16 3 O -0.50 -9.21 13.06 -18.97 -0.25 -9.46 16 4 N -0.61 -7.08 3.03 -166.30 -0.50 -7.58 16 5 C 0.07 0.52 6.53 -3.53 -0.02 0.50 16 6 C 0.04 0.32 6.98 37.31 0.26 0.58 16 7 O -0.37 -4.19 10.74 -35.23 -0.38 -4.57 16 8 C 0.06 0.79 6.24 37.10 0.23 1.02 16 9 C 0.09 1.27 3.48 -68.78 -0.24 1.03 16 10 H 0.09 1.05 7.93 -51.93 -0.41 0.64 16 11 C 0.54 9.80 4.45 -10.98 -0.05 9.75 16 12 O -0.52 -11.86 14.32 -18.97 -0.27 -12.13 16 13 N -0.71 -12.62 5.12 -52.03 -0.27 -12.88 16 14 C 0.13 2.72 2.74 -66.10 -0.18 2.54 16 15 H 0.09 2.05 7.52 -51.92 -0.39 1.66 16 16 C 0.17 4.52 5.13 -3.07 -0.02 4.51 16 17 N -0.61 -16.21 3.40 -169.94 -0.58 -16.78 16 18 C -0.23 -6.60 10.28 -15.06 -0.15 -6.76 16 19 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -28.07 10.31 55.49 0.57 -27.50 16 22 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.14 3.06 6.72 -2.41 -0.02 3.04 16 27 C -0.11 -2.07 3.27 -88.36 -0.29 -2.36 16 28 H 0.07 1.30 8.01 -51.93 -0.42 0.88 16 29 C -0.13 -2.06 9.32 37.16 0.35 -1.72 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.44 6.51 -51.93 -0.34 0.11 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.41 5.61 -51.93 -0.29 0.12 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.07 1.05 7.93 -51.93 -0.41 0.64 16 39 H 0.39 5.78 8.39 -40.82 -0.34 5.44 16 40 H 0.05 1.36 7.27 -51.93 -0.38 0.98 16 41 H 0.05 1.39 7.51 -51.93 -0.39 1.00 16 42 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -38.05 370.36 -8.64 -46.69 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.55 Total: 3.48 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 0.03 Total: 17.45 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: -0.77 Total: -64.75 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.90 Total: -26.16 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.05 -8.64 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080968732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.915 kcal (2) G-P(sol) polarization free energy of solvation -38.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds