Wall clock time and date at job start Tue Mar 31 2020 06:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21281 * 119.99813 * 2 1 4 4 N 1.34772 * 120.00392 * 179.72438 * 2 1 3 5 5 C 1.47155 * 120.97999 * 354.31725 * 4 2 1 6 6 C 1.53295 * 108.38421 * 129.44440 * 5 4 2 7 7 O 1.42964 * 109.22473 * 52.29734 * 6 5 4 8 8 C 1.42957 * 114.16843 * 297.42138 * 7 6 5 9 9 C 1.47152 * 120.98372 * 174.03695 * 4 2 1 10 10 H 1.08993 * 109.68450 * 110.83398 * 9 4 2 11 11 C 1.50703 * 109.67969 * 350.27565 * 9 4 2 12 12 O 1.21280 * 120.00210 * 302.31880 * 11 9 4 13 13 N 1.34781 * 119.99481 * 122.31530 * 11 9 4 14 14 C 1.46501 * 119.99817 * 179.97438 * 13 11 9 15 15 H 1.09010 * 110.63678 * 34.30338 * 14 13 11 16 16 C 1.54320 * 110.72430 * 271.16133 * 14 13 11 17 17 N 1.47020 * 107.27210 * 219.44485 * 16 14 13 18 18 C 1.36931 * 125.64759 * 178.90368 * 17 16 14 19 19 H 1.08003 * 120.00305 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00245 * 0.02587 * 18 17 16 21 21 N 1.31619 * 119.99950 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00297 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47416 * 89.99252 * 22 20 18 24 24 H 1.48503 * 109.47137 * 209.99854 * 22 20 18 25 25 H 1.48506 * 109.46934 * 329.99657 * 22 20 18 26 26 C 1.47425 * 108.70153 * 358.93572 * 17 16 14 27 27 C 1.55126 * 104.94191 * 24.00723 * 26 17 16 28 28 H 1.09004 * 110.93560 * 81.21050 * 27 26 17 29 29 C 1.53002 * 111.16115 * 205.12553 * 27 26 17 30 30 H 1.09004 * 109.46645 * 264.88081 * 1 2 3 31 31 H 1.08997 * 109.47480 * 24.88652 * 1 2 3 32 32 H 1.09006 * 109.46928 * 144.88885 * 1 2 3 33 33 H 1.09007 * 109.67854 * 249.15976 * 5 4 2 34 34 H 1.08992 * 109.68211 * 9.67919 * 5 4 2 35 35 H 1.09003 * 109.51232 * 172.22585 * 6 5 4 36 36 H 1.09006 * 109.50978 * 292.37746 * 6 5 4 37 37 H 1.08998 * 109.51013 * 182.50459 * 8 7 6 38 38 H 1.09001 * 109.51171 * 302.65612 * 8 7 6 39 39 H 0.96996 * 119.99967 * 0.02562 * 13 11 9 40 40 H 1.08995 * 109.87940 * 338.86076 * 16 14 13 41 41 H 1.09006 * 109.88452 * 99.86829 * 16 14 13 42 42 H 0.97002 * 120.00257 * 180.02562 * 21 20 18 43 43 H 1.09006 * 110.36300 * 142.96838 * 26 17 16 44 44 H 1.08994 * 110.36997 * 265.17811 * 26 17 16 45 45 H 1.08993 * 109.46906 * 172.16573 * 29 27 26 46 46 H 1.08995 * 109.47393 * 292.17349 * 29 27 26 47 47 H 1.09001 * 109.46866 * 52.17151 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 1.4725 -2.4502 0.1367 6 6 1.9496 -3.3825 -0.9827 7 8 3.3780 -3.4415 -0.9694 8 6 4.0180 -2.1894 -1.2267 9 6 3.6463 -1.1963 -0.1253 10 1 4.0929 -1.5135 0.8170 11 6 4.1507 0.1761 -0.4903 12 8 3.7461 0.7238 -1.4939 13 7 5.0514 0.7948 0.2987 14 6 5.5422 2.1287 -0.0563 15 1 4.7559 2.7125 -0.5351 16 6 6.7817 2.0292 -0.9702 17 7 7.7203 3.0794 -0.5486 18 6 8.9538 3.3136 -1.0952 19 1 9.5710 4.1132 -0.7127 20 6 9.4110 2.5235 -2.1409 21 7 8.6591 1.5488 -2.6067 22 14 11.0940 2.8426 -2.8860 23 1 12.1151 2.0425 -2.1634 24 1 11.0828 2.4530 -4.3190 25 1 11.4219 4.2862 -2.7681 26 6 7.1138 3.8380 0.5605 27 6 6.0868 2.8646 1.1963 28 1 6.5789 2.1682 1.8753 29 6 4.9711 3.6289 1.9118 30 1 -0.3633 -0.0917 1.0236 31 1 -0.3634 0.9322 -0.4324 32 1 -0.3633 -0.8407 -0.5911 33 1 1.6966 -2.8959 1.1060 34 1 0.3986 -2.2875 0.0470 35 1 1.5424 -4.3810 -0.8234 36 1 1.6101 -2.9993 -1.9451 37 1 5.0988 -2.3295 -1.2428 38 1 3.6859 -1.8019 -2.1899 39 1 5.3752 0.3566 1.1012 40 1 7.2468 1.0498 -0.8585 41 1 6.4900 2.1846 -2.0089 42 1 8.9788 0.9964 -3.3372 43 1 7.8746 4.1175 1.2894 44 1 6.6085 4.7260 0.1811 45 1 4.1960 2.9302 2.2264 46 1 5.3803 4.1354 2.7859 47 1 4.5421 4.3657 1.2327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080968732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:26 Heat of formation + Delta-G solvation = -96.872358 kcal Electronic energy + Delta-G solvation = -29720.293070 eV Core-core repulsion = 25710.553297 eV Total energy + Delta-G solvation = -4009.739773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09160 -40.30159 -39.33996 -38.82836 -35.89795 -35.59107 -34.29026 -33.07749 -32.18495 -30.76868 -29.64271 -28.53995 -27.41556 -26.04946 -25.05118 -23.29432 -22.63046 -21.56607 -21.41685 -20.08135 -18.91332 -18.61547 -17.99396 -17.77268 -17.25117 -16.94560 -16.73153 -16.42605 -16.03893 -15.85019 -15.66779 -15.26029 -15.00668 -14.75476 -14.67375 -14.43658 -14.10870 -14.07430 -13.70341 -13.36668 -13.27349 -13.08186 -13.04443 -12.96663 -12.89749 -12.60336 -12.48606 -12.20593 -12.04987 -12.02555 -11.87117 -11.67691 -11.48613 -11.37990 -10.82149 -10.75668 -10.58592 -9.95473 -9.67068 -8.94991 -7.85449 -5.24298 1.40116 1.43314 1.46828 1.55468 1.61932 2.03094 2.17933 2.48276 2.79360 3.32310 3.45008 3.53137 3.68271 3.73947 3.79637 3.87891 3.97922 4.04914 4.10196 4.15286 4.21290 4.37800 4.45063 4.48436 4.56127 4.59748 4.64668 4.69809 4.76115 4.83899 4.89925 5.00213 5.03490 5.05620 5.19732 5.21871 5.31211 5.43310 5.45250 5.61801 5.79434 5.95582 6.14508 6.27922 6.63009 7.04729 7.10822 7.44000 7.73442 8.38518 9.24008 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.015765 B = 0.003773 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.660105 B = 7418.727628 C = 8703.123019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.490 3.510 3 O -0.560 6.560 4 N -0.611 5.611 5 C 0.073 3.927 6 C 0.032 3.968 7 O -0.379 6.379 8 C 0.070 3.930 9 C 0.100 3.900 10 H 0.119 0.881 11 C 0.532 3.468 12 O -0.575 6.575 13 N -0.700 5.700 14 C 0.147 3.853 15 H 0.056 0.944 16 C 0.193 3.807 17 N -0.627 5.627 18 C -0.245 4.245 19 H 0.089 0.911 20 C -0.069 4.069 21 N -0.953 5.953 22 Si 0.983 3.017 23 H -0.280 1.280 24 H -0.298 1.298 25 H -0.267 1.267 26 C 0.134 3.866 27 C -0.094 4.094 28 H 0.094 0.906 29 C -0.123 4.123 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.052 0.948 37 H 0.111 0.889 38 H 0.044 0.956 39 H 0.408 0.592 40 H 0.021 0.979 41 H -0.015 1.015 42 H 0.245 0.755 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.489 -12.099 12.272 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.281 3.719 3 O -0.438 6.438 4 N -0.349 5.349 5 C -0.048 4.048 6 C -0.045 4.045 7 O -0.297 6.297 8 C -0.008 4.008 9 C -0.007 4.007 10 H 0.137 0.863 11 C 0.319 3.681 12 O -0.453 6.453 13 N -0.352 5.352 14 C 0.041 3.959 15 H 0.075 0.925 16 C 0.066 3.934 17 N -0.354 5.354 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.262 4.262 21 N -0.602 5.602 22 Si 0.811 3.189 23 H -0.207 1.207 24 H -0.224 1.224 25 H -0.191 1.191 26 C 0.009 3.991 27 C -0.114 4.114 28 H 0.112 0.888 29 C -0.180 4.180 30 H 0.140 0.860 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.153 0.847 35 H 0.163 0.837 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.062 0.938 39 H 0.244 0.756 40 H 0.039 0.961 41 H 0.003 0.997 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.266 -11.371 11.445 25.129 hybrid contribution 1.169 0.325 -0.921 1.524 sum -18.097 -11.046 10.524 23.670 Atomic orbital electron populations 1.21930 0.87198 1.05880 1.06641 1.21924 0.92825 0.82473 0.74704 1.90812 1.70267 1.32777 1.49909 1.48297 1.04482 1.08125 1.73978 1.22888 0.99512 0.81388 1.00992 1.23397 0.80143 1.02881 0.98037 1.87998 1.20640 1.28821 1.92256 1.22562 0.99369 0.83697 0.95192 1.21662 0.83839 0.92909 1.02325 0.86336 1.20195 0.77884 0.87003 0.83016 1.90661 1.58511 1.67071 1.29081 1.45555 1.44005 1.18109 1.27524 1.21856 0.94371 0.83347 0.96324 0.92531 1.21067 0.87457 0.91551 0.93285 1.44728 1.16029 1.35987 1.38626 1.19545 0.92062 1.13114 1.12661 0.89299 1.25760 1.02628 0.98176 0.99611 1.70256 1.38121 1.22553 1.29306 0.85009 0.78934 0.78158 0.76802 1.20678 1.22442 1.19134 1.21857 0.94397 0.93468 0.89392 1.22561 0.96409 0.97587 0.94796 0.88818 1.21568 0.96707 0.99558 1.00190 0.86035 0.89869 0.86974 0.88038 0.84663 0.83715 0.92953 0.87059 0.93771 0.75618 0.96113 0.99685 0.94602 0.92280 0.96186 0.92307 0.89993 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.32 71.24 0.66 -1.45 16 2 C 0.49 12.67 7.43 87.66 0.65 13.32 16 3 O -0.56 -21.39 13.06 20.42 0.27 -21.12 16 4 N -0.61 -13.14 3.03 -798.44 -2.42 -15.55 16 5 C 0.07 0.73 6.53 86.35 0.56 1.29 16 6 C 0.03 0.39 6.98 72.08 0.50 0.90 16 7 O -0.38 -7.93 10.74 -148.98 -1.60 -9.53 16 8 C 0.07 1.86 6.24 71.94 0.45 2.31 16 9 C 0.10 2.68 3.48 44.08 0.15 2.84 16 10 H 0.12 2.52 7.93 -2.39 -0.02 2.50 16 11 C 0.53 20.40 4.45 87.66 0.39 20.79 16 12 O -0.57 -28.17 14.32 20.42 0.29 -27.88 16 13 N -0.70 -25.87 5.12 -436.91 -2.24 -28.10 16 14 C 0.15 6.49 2.74 46.18 0.13 6.62 16 15 H 0.06 2.86 7.52 -2.38 -0.02 2.84 16 16 C 0.19 10.73 5.13 86.73 0.44 11.17 16 17 N -0.63 -34.66 3.40 -691.57 -2.35 -37.01 16 18 C -0.25 -14.45 10.28 84.03 0.86 -13.59 16 19 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16 20 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 21 N -0.95 -61.37 10.31 21.65 0.22 -61.15 16 22 Si 0.98 47.76 29.55 68.60 2.03 49.79 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 24 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 C 0.13 5.78 6.72 86.93 0.58 6.37 16 27 C -0.09 -3.37 3.27 -9.33 -0.03 -3.40 16 28 H 0.09 3.05 8.01 -2.38 -0.02 3.03 16 29 C -0.12 -3.55 9.32 71.98 0.67 -2.88 16 30 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.11 0.77 6.51 -2.38 -0.02 0.75 16 33 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.14 0.40 5.61 -2.39 -0.01 0.39 16 35 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.11 2.96 8.14 -2.39 -0.02 2.95 16 38 H 0.04 1.39 7.93 -2.39 -0.02 1.37 16 39 H 0.41 11.95 8.39 -92.71 -0.78 11.17 16 40 H 0.02 1.25 7.27 -2.39 -0.02 1.23 16 41 H -0.02 -1.01 7.51 -2.38 -0.02 -1.03 16 42 H 0.24 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.02 0.88 7.99 -2.39 -0.02 0.86 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 46 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 47 H 0.04 1.38 8.08 -2.39 -0.02 1.36 16 Total: -1.00 -91.68 370.36 0.91 -90.77 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.20 Total: 19.18 kcal Atomic # 6 Polarization: 34.11 SS G_CDS: 6.50 Total: 40.61 kcal Atomic # 7 Polarization: -135.04 SS G_CDS: -6.78 Total: -141.81 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -1.04 Total: -58.54 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -91.68 0.91 -90.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080968732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.102 kcal (2) G-P(sol) polarization free energy of solvation -91.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds