Wall clock time and date at job start Tue Mar 31 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00181 * 2 1 4 4 H 1.09003 * 110.63356 * 29.29663 * 3 2 1 5 5 C 1.54320 * 110.72227 * 266.15949 * 3 2 1 6 6 N 1.47017 * 107.27004 * 219.44268 * 5 3 2 7 7 C 1.36944 * 125.64480 * 178.90353 * 6 5 3 8 8 H 1.07999 * 119.99712 * 174.87286 * 7 6 5 9 9 C 1.38804 * 120.00391 * 354.87753 * 7 6 5 10 10 N 1.31619 * 119.99919 * 7.06261 * 9 7 6 11 11 Si 1.86800 * 120.00280 * 187.06473 * 9 7 6 12 12 H 1.48498 * 109.47335 * 94.98585 * 11 9 7 13 13 H 1.48505 * 109.47166 * 214.98719 * 11 9 7 14 14 H 1.48505 * 109.46981 * 334.98085 * 11 9 7 15 15 C 1.47414 * 108.70431 * 358.93938 * 6 5 3 16 16 C 1.55120 * 104.94663 * 24.00434 * 15 6 5 17 17 H 1.08997 * 110.93557 * 81.21434 * 16 15 6 18 18 N 1.46496 * 111.16539 * 205.13477 * 16 15 6 19 19 C 1.34778 * 119.99624 * 267.16475 * 18 16 15 20 20 O 1.21281 * 120.00348 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99848 * 179.97438 * 19 18 16 22 22 H 1.08998 * 109.29952 * 320.42234 * 21 19 18 23 23 C 1.52925 * 109.29874 * 80.00386 * 21 19 18 24 24 C 1.53344 * 108.67380 * 171.06646 * 23 21 19 25 25 H 1.08993 * 109.67696 * 52.19672 * 24 23 21 26 26 C 1.52996 * 109.67669 * 172.73688 * 24 23 21 27 27 C 1.53075 * 108.42445 * 292.46767 * 24 23 21 28 28 C 1.50176 * 109.89061 * 48.89848 * 27 24 23 29 29 O 1.21282 * 118.24835 * 162.43727 * 28 27 24 30 30 N 1.33356 * 123.50875 * 342.42073 * 28 27 24 31 31 H 1.08994 * 109.47090 * 300.00203 * 1 2 3 32 32 H 1.09004 * 109.46978 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47231 * 59.99916 * 1 2 3 34 34 H 1.09004 * 109.87932 * 338.86060 * 5 3 2 35 35 H 1.09002 * 109.88491 * 99.86616 * 5 3 2 36 36 H 0.97011 * 119.99970 * 180.02562 * 10 9 7 37 37 H 1.09006 * 110.36972 * 142.97073 * 15 6 5 38 38 H 1.09006 * 110.36815 * 265.28724 * 15 6 5 39 39 H 0.97002 * 120.00387 * 87.17048 * 18 16 15 40 40 H 1.09003 * 109.60318 * 290.82162 * 23 21 19 41 41 H 1.08996 * 109.60358 * 51.30990 * 23 21 19 42 42 H 1.09004 * 109.46756 * 59.99441 * 26 24 23 43 43 H 1.08994 * 109.47613 * 180.02562 * 26 24 23 44 44 H 1.09002 * 109.47018 * 299.99858 * 26 24 23 45 45 H 1.08994 * 109.40294 * 169.03191 * 27 24 23 46 46 H 1.08999 * 109.39740 * 288.85736 * 27 24 23 47 47 H 0.97003 * 117.94601 * 182.21735 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3538 2.0183 0.4992 5 6 2.3207 1.7650 -1.4401 6 7 3.6105 2.4698 -1.4049 7 6 4.2516 3.0151 -2.4851 8 1 5.1574 3.5860 -2.3438 9 6 3.7373 2.8343 -3.7616 10 7 2.5640 2.2602 -3.9232 11 14 4.7104 3.4055 -5.2503 12 1 5.4998 2.2700 -5.7912 13 1 3.7755 3.8996 -6.2930 14 1 5.6295 4.5012 -4.8502 15 6 4.0995 2.4914 -0.0145 16 6 3.4088 1.2837 0.6715 17 1 3.9351 0.3556 0.4481 18 7 3.3001 1.4881 2.1180 19 6 4.2624 1.0221 2.9386 20 8 5.2186 0.4341 2.4795 21 6 4.1508 1.2329 4.4266 22 1 3.7593 2.2314 4.6207 23 6 3.1962 0.1927 5.0142 24 6 3.2642 0.2726 6.5441 25 1 3.1064 1.3022 6.8651 26 6 2.1896 -0.6287 7.1553 27 6 4.6494 -0.2003 6.9921 28 6 5.7110 0.4934 6.1877 29 8 6.8469 0.4907 6.6129 30 7 5.4717 1.1118 5.0307 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 2.3892 0.8992 -2.0988 35 1 1.5378 2.4370 -1.7917 36 1 2.2047 2.1335 -4.8153 37 1 5.1829 2.3734 0.0086 38 1 3.8079 3.4203 0.4759 39 1 2.5355 1.9586 2.4853 40 1 2.1791 0.4008 4.6820 41 1 3.4939 -0.8033 4.6865 42 1 2.3564 -1.6585 6.8393 43 1 2.2406 -0.5691 8.2424 44 1 1.2060 -0.3004 6.8196 45 1 4.7867 0.0306 8.0485 46 1 4.7299 -1.2771 6.8435 47 1 6.2239 1.5058 4.5617 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081683976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:38 Heat of formation + Delta-G solvation = -93.823020 kcal Electronic energy + Delta-G solvation = -28635.630119 eV Core-core repulsion = 24626.022575 eV Total energy + Delta-G solvation = -4009.607544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01018 -39.53097 -38.25206 -36.90827 -35.97774 -34.35712 -34.14910 -31.92904 -30.33283 -28.80784 -28.27613 -27.22048 -26.19631 -25.12446 -24.00809 -21.89412 -20.96956 -20.63392 -20.09160 -19.54948 -17.94457 -17.34144 -16.99548 -16.67099 -16.25414 -15.62955 -15.50427 -15.07725 -14.80326 -14.66593 -14.48325 -14.24028 -14.04992 -13.84687 -13.67896 -13.29196 -12.95438 -12.84872 -12.53322 -12.36334 -12.13152 -11.97763 -11.81998 -11.62971 -11.33027 -11.30416 -11.20683 -11.07778 -10.86249 -10.80738 -10.28133 -10.16175 -10.05320 -9.88604 -9.84604 -9.35127 -9.16008 -8.85961 -8.63091 -6.94666 -5.79990 -3.13930 2.39825 2.44456 2.85724 3.25268 3.38310 3.44004 3.45109 4.05458 4.15893 4.20053 4.22133 4.29202 4.46664 4.65247 4.74948 4.96012 5.05331 5.11132 5.16690 5.24442 5.30077 5.35058 5.41362 5.41862 5.50470 5.54751 5.56410 5.63380 5.69773 5.76609 5.83654 5.85997 5.95931 6.06194 6.38178 6.51871 6.54464 6.73024 7.08175 7.17352 7.40896 7.47647 7.66354 7.79459 7.99616 8.13168 8.18160 9.11785 9.72173 10.34821 11.31793 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.002963 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.254557 B = 9446.170397 C =10720.167829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.163 3.837 6 N -0.599 5.599 7 C -0.232 4.232 8 H 0.081 0.919 9 C -0.004 4.004 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.108 0.892 18 N -0.709 5.709 19 C 0.501 3.499 20 O -0.523 6.523 21 C 0.126 3.874 22 H 0.099 0.901 23 C -0.123 4.123 24 C -0.094 4.094 25 H 0.083 0.917 26 C -0.147 4.147 27 C -0.132 4.132 28 C 0.524 3.476 29 O -0.556 6.556 30 N -0.699 5.699 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.254 0.746 37 H 0.050 0.950 38 H 0.023 0.977 39 H 0.398 0.602 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.453 -3.095 21.113 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.037 3.963 6 N -0.327 5.327 7 C -0.360 4.360 8 H 0.099 0.901 9 C -0.201 4.201 10 N -0.566 5.566 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.205 1.205 15 C 0.004 3.996 16 C 0.026 3.974 17 H 0.126 0.874 18 N -0.359 5.359 19 C 0.285 3.715 20 O -0.398 6.398 21 C 0.017 3.983 22 H 0.117 0.883 23 C -0.162 4.162 24 C -0.112 4.112 25 H 0.101 0.899 26 C -0.204 4.204 27 C -0.172 4.172 28 C 0.311 3.689 29 O -0.434 6.434 30 N -0.352 5.352 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.040 0.960 39 H 0.231 0.769 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -6.277 -3.789 20.877 22.127 hybrid contribution -0.025 0.922 -1.054 1.401 sum -6.301 -2.867 19.823 20.997 Atomic orbital electron populations 1.22708 0.81672 1.02076 0.99798 1.87914 1.19136 1.27527 1.95058 1.23838 0.92687 0.84115 0.99619 0.91939 1.21589 0.88364 0.97223 0.89082 1.44234 1.20502 1.66261 1.01718 1.19068 1.06029 1.26844 0.84020 0.90100 1.24837 0.97164 1.00638 0.97460 1.69947 1.16936 1.48493 1.21272 0.86088 0.79005 0.78089 0.82516 1.21451 1.21728 1.20540 1.21854 0.97635 0.93597 0.86561 1.22471 0.96494 1.01350 0.77053 0.87421 1.45894 1.24452 1.58138 1.07459 1.20652 0.83234 0.79325 0.88299 1.90779 1.31404 1.40558 1.77080 1.20894 0.85232 1.01544 0.90642 0.88348 1.21961 0.99365 0.99383 0.95446 1.21263 0.94517 1.01109 0.94330 0.89896 1.21811 0.98050 0.99619 1.00904 1.21775 0.92589 1.01987 1.00823 1.20135 0.90024 0.77813 0.80882 1.90775 1.23223 1.60276 1.69171 1.45245 1.09863 1.57492 1.22567 0.94831 0.90234 0.93578 0.91808 0.93500 0.93605 0.93126 0.95976 0.76854 0.88838 0.89900 0.92162 0.92081 0.91948 0.87957 0.87960 0.75691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.86 101.05 1.10 1.54 16 2 O -0.38 -6.49 10.43 -35.23 -0.37 -6.86 16 3 C 0.06 0.99 3.06 -24.90 -0.08 0.91 16 4 H 0.06 0.94 7.71 -51.93 -0.40 0.54 16 5 C 0.16 3.80 5.16 -3.07 -0.02 3.79 16 6 N -0.60 -14.96 3.40 -169.95 -0.58 -15.53 16 7 C -0.23 -6.38 10.27 -15.06 -0.15 -6.53 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 10 N -0.92 -26.42 10.36 55.49 0.57 -25.85 16 11 Si 0.91 21.91 29.56 -169.99 -5.02 16.89 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.13 2.66 6.94 -2.42 -0.02 2.64 16 16 C 0.13 2.28 3.16 -65.67 -0.21 2.08 16 17 H 0.11 2.20 7.54 -51.93 -0.39 1.81 16 18 N -0.71 -8.80 5.21 -51.62 -0.27 -9.07 16 19 C 0.50 6.48 6.98 -10.98 -0.08 6.40 16 20 O -0.52 -9.31 16.04 5.56 0.09 -9.22 16 21 C 0.13 1.11 3.45 -69.52 -0.24 0.87 16 22 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 23 C -0.12 -0.83 4.58 -26.59 -0.12 -0.95 16 24 C -0.09 -0.51 2.80 -90.40 -0.25 -0.77 16 25 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 26 C -0.15 -0.63 9.20 37.16 0.34 -0.29 16 27 C -0.13 -1.00 5.35 -28.10 -0.15 -1.15 16 28 C 0.52 6.15 7.71 -11.87 -0.09 6.06 16 29 O -0.56 -8.92 17.78 5.56 0.10 -8.82 16 30 N -0.70 -7.70 4.79 -55.99 -0.27 -7.97 16 31 H 0.03 0.35 8.11 -51.93 -0.42 -0.07 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.72 7.21 -51.93 -0.37 1.34 16 35 H 0.05 1.18 7.61 -51.93 -0.40 0.79 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.40 3.53 8.57 -40.82 -0.35 3.18 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 47 H 0.41 4.99 8.46 -40.82 -0.35 4.64 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -35.32 381.00 -7.78 -43.09 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.71 Total: 3.22 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -0.06 Total: 14.38 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.54 Total: -58.42 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.18 Total: -24.91 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.32 -7.78 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081683976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.730 kcal (2) G-P(sol) polarization free energy of solvation -35.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds