Wall clock time and date at job start Tue Mar 31 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21273 * 120.00063 * 2 1 4 4 N 1.34781 * 120.00171 * 179.97438 * 2 1 3 5 5 C 1.47157 * 120.97939 * 4.33709 * 4 2 1 6 6 C 1.53291 * 108.41379 * 129.44924 * 5 4 2 7 7 O 1.42963 * 109.22368 * 52.28397 * 6 5 4 8 8 C 1.42963 * 114.16802 * 297.41765 * 7 6 5 9 9 C 1.47157 * 120.99173 * 184.25760 * 4 2 1 10 10 H 1.09001 * 109.64862 * 110.83023 * 9 4 2 11 11 C 1.50698 * 109.71884 * 350.30815 * 9 4 2 12 12 O 1.21284 * 119.99782 * 297.00275 * 11 9 4 13 13 N 1.34780 * 120.00041 * 116.99593 * 11 9 4 14 14 C 1.47426 * 125.64959 * 185.06719 * 13 11 9 15 15 C 1.54902 * 104.83105 * 204.09773 * 14 13 11 16 16 H 1.09000 * 111.00779 * 81.10549 * 15 14 13 17 17 C 1.53005 * 111.00179 * 204.91509 * 15 14 13 18 18 C 1.55156 * 101.58218 * 322.99067 * 15 14 13 19 19 H 1.09001 * 110.71816 * 277.13815 * 18 15 14 20 20 N 1.46503 * 110.71897 * 154.04579 * 18 15 14 21 21 C 1.36938 * 119.99983 * 154.99913 * 20 18 15 22 22 H 1.07996 * 119.99968 * 0.02562 * 21 20 18 23 23 C 1.38811 * 119.99895 * 179.97438 * 21 20 18 24 24 N 1.31624 * 119.99549 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00219 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47098 * 89.99849 * 25 23 21 27 27 H 1.48498 * 109.47172 * 209.99753 * 25 23 21 28 28 H 1.48503 * 109.47084 * 329.99762 * 25 23 21 29 29 C 1.47024 * 125.64652 * 4.76758 * 13 11 9 30 30 H 1.09002 * 109.47299 * 176.01388 * 1 2 3 31 31 H 1.08997 * 109.46937 * 296.01236 * 1 2 3 32 32 H 1.08997 * 109.47029 * 56.01342 * 1 2 3 33 33 H 1.09000 * 109.68314 * 9.71340 * 5 4 2 34 34 H 1.09000 * 109.68263 * 249.19342 * 5 4 2 35 35 H 1.09003 * 109.51439 * 172.20740 * 6 5 4 36 36 H 1.09000 * 109.51471 * 292.31008 * 6 5 4 37 37 H 1.08996 * 109.51442 * 182.50238 * 8 7 6 38 38 H 1.08994 * 109.51317 * 302.60401 * 8 7 6 39 39 H 1.09000 * 110.36391 * 322.93583 * 14 13 11 40 40 H 1.08998 * 110.36099 * 85.14709 * 14 13 11 41 41 H 1.09004 * 109.46733 * 58.55173 * 17 15 14 42 42 H 1.09002 * 109.47063 * 178.54451 * 17 15 14 43 43 H 1.08994 * 109.47344 * 298.54488 * 17 15 14 44 44 H 0.96993 * 120.00003 * 335.00156 * 20 18 15 45 45 H 0.97009 * 119.99333 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.87804 * 298.39166 * 29 13 11 47 47 H 1.08997 * 109.88132 * 59.55258 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4702 -2.4523 -0.0943 6 6 2.1169 -3.2821 -1.2092 7 8 3.5273 -3.3517 -0.9866 8 6 4.1899 -2.0856 -1.0300 9 6 3.6493 -1.1943 0.0942 10 1 3.9475 -1.6010 1.0605 11 6 4.1944 0.2022 -0.0588 12 8 4.0269 0.8083 -1.0959 13 7 4.8680 0.7777 0.9569 14 6 5.3609 2.1669 0.9831 15 6 6.5350 2.1521 1.9935 16 1 7.4477 1.7818 1.5266 17 6 6.7559 3.5403 2.5978 18 6 6.0129 1.1566 3.0630 19 1 5.3511 1.6599 3.7678 20 7 7.1289 0.5199 3.7669 21 6 6.9495 0.0297 5.0329 22 1 5.9853 0.1121 5.5123 23 6 8.0067 -0.5741 5.6997 24 7 7.8343 -1.0448 6.9168 25 14 9.6743 -0.7173 4.8703 26 1 10.4880 0.4847 5.1839 27 1 10.3717 -1.9305 5.3673 28 1 9.4890 -0.8200 3.4005 29 6 5.2275 0.1260 2.2248 30 1 -0.3634 -1.0252 -0.0714 31 1 -0.3633 0.4507 0.9235 32 1 -0.3633 0.5744 -0.8521 33 1 0.4210 -2.2750 -0.3302 34 1 1.5484 -2.9858 0.8529 35 1 1.6975 -4.2882 -1.2043 36 1 1.9224 -2.8114 -2.1730 37 1 5.2618 -2.2307 -0.8959 38 1 4.0045 -1.6104 -1.9932 39 1 5.7143 2.4627 -0.0047 40 1 4.5750 2.8419 1.3219 41 1 5.8435 3.8695 3.0950 42 1 7.5689 3.4958 3.3226 43 1 7.0129 4.2443 1.8064 44 1 7.9948 0.4455 3.3363 45 1 8.5733 -1.4664 7.3828 46 1 4.3245 -0.1756 2.7556 47 1 5.8535 -0.7447 2.0296 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082931802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:34 Heat of formation + Delta-G solvation = -69.576689 kcal Electronic energy + Delta-G solvation = -29662.382386 eV Core-core repulsion = 25653.826243 eV Total energy + Delta-G solvation = -4008.556144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12506 -39.23890 -38.45281 -37.32607 -35.04333 -34.14251 -32.76519 -31.93795 -31.01778 -30.08462 -27.94407 -27.85458 -26.49982 -24.60891 -23.70293 -22.51159 -21.49124 -20.27430 -20.07223 -18.63796 -17.65085 -17.47949 -17.08565 -16.75908 -16.10610 -15.89964 -15.50514 -15.36254 -15.13383 -14.50219 -14.46583 -14.08763 -13.84454 -13.75085 -13.38255 -13.17782 -13.10642 -12.65189 -12.53379 -12.46133 -12.38817 -12.11492 -12.06185 -11.71829 -11.64814 -11.42709 -11.26744 -11.10404 -10.77491 -10.59677 -10.54501 -10.35589 -10.01495 -9.70511 -9.65740 -9.44629 -9.03143 -8.85035 -8.20820 -7.40640 -5.85642 -3.23310 2.29771 2.47298 3.11724 3.21448 3.32412 3.35546 3.41090 3.55314 4.26888 4.35306 4.47694 4.51535 4.63731 4.72196 4.73025 4.86709 5.02065 5.02696 5.09174 5.10491 5.13401 5.16879 5.31870 5.41274 5.51467 5.53004 5.55272 5.57608 5.73151 5.77732 5.83427 5.94310 6.02991 6.14589 6.17922 6.33617 6.39139 6.51603 6.60835 6.71905 6.78382 7.07238 7.85181 7.90437 7.97318 8.33153 8.52709 9.09890 9.82178 10.00856 11.32083 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.003898 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.413724 B = 7181.065170 C = 8036.691750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.504 3.496 3 O -0.502 6.502 4 N -0.609 5.609 5 C 0.070 3.930 6 C 0.044 3.956 7 O -0.372 6.372 8 C 0.064 3.936 9 C 0.091 3.909 10 H 0.101 0.899 11 C 0.554 3.446 12 O -0.533 6.533 13 N -0.610 5.610 14 C 0.124 3.876 15 C -0.119 4.119 16 H 0.080 0.920 17 C -0.133 4.133 18 C 0.184 3.816 19 H 0.076 0.924 20 N -0.735 5.735 21 C -0.252 4.252 22 H 0.092 0.908 23 C 0.010 3.990 24 N -0.930 5.930 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 C 0.073 3.927 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.364 0.636 45 H 0.261 0.739 46 H 0.058 0.942 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.026 -1.763 -16.075 21.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.293 3.707 3 O -0.375 6.375 4 N -0.348 5.348 5 C -0.052 4.052 6 C -0.034 4.034 7 O -0.289 6.289 8 C -0.014 4.014 9 C -0.015 4.015 10 H 0.119 0.881 11 C 0.342 3.658 12 O -0.410 6.410 13 N -0.345 5.345 14 C 0.001 3.999 15 C -0.139 4.139 16 H 0.098 0.902 17 C -0.191 4.191 18 C 0.073 3.927 19 H 0.094 0.906 20 N -0.376 5.376 21 C -0.381 4.381 22 H 0.110 0.890 23 C -0.186 4.186 24 N -0.576 5.576 25 Si 0.713 3.287 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.053 4.053 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.197 0.803 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.827 -1.130 -16.389 21.472 hybrid contribution 0.959 -0.246 -0.316 1.039 sum -12.868 -1.375 -16.705 21.131 Atomic orbital electron populations 1.21984 0.91321 1.04338 1.05508 1.20942 0.90780 0.83094 0.75929 1.90842 1.68542 1.30539 1.47624 1.48113 1.05014 1.06631 1.75008 1.22634 0.97514 0.84171 1.00928 1.23030 0.82020 1.01282 0.97040 1.88017 1.19714 1.28458 1.92737 1.22838 0.97790 0.83660 0.97124 1.21924 0.81491 0.95985 1.02132 0.88098 1.19079 0.77350 0.86247 0.83168 1.90647 1.57936 1.63926 1.28502 1.48258 1.55972 1.13608 1.16680 1.22125 0.95355 0.82915 0.99489 1.22696 0.97670 0.97177 0.96326 0.90168 1.21605 1.02424 0.94662 1.00395 1.21185 0.90006 0.90157 0.91398 0.90592 1.42710 1.08207 1.70676 1.16052 1.19074 0.98569 1.31168 0.89324 0.89047 1.24664 0.97647 1.00203 0.96089 1.69704 1.31723 1.44210 1.12006 0.86587 0.85561 0.77599 0.78980 1.20933 1.21653 1.20270 1.23208 0.99610 0.98642 0.83853 0.90103 0.88478 0.88718 0.87824 0.89858 0.87232 0.92361 0.87106 0.91226 0.91126 0.91618 0.92508 0.91593 0.93092 0.80268 0.92921 0.92327 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.11 36.01 0.36 -1.00 16 2 C 0.50 6.72 7.66 -10.98 -0.08 6.63 16 3 O -0.50 -9.14 12.81 -19.08 -0.24 -9.39 16 4 N -0.61 -7.31 3.02 -166.05 -0.50 -7.82 16 5 C 0.07 0.53 6.49 -3.53 -0.02 0.50 16 6 C 0.04 0.34 6.99 37.31 0.26 0.60 16 7 O -0.37 -4.19 10.74 -35.23 -0.38 -4.57 16 8 C 0.06 0.79 6.24 37.31 0.23 1.02 16 9 C 0.09 1.28 3.33 -68.57 -0.23 1.05 16 10 H 0.10 1.42 6.64 -51.93 -0.34 1.07 16 11 C 0.55 9.57 4.43 -10.99 -0.05 9.52 16 12 O -0.53 -10.75 14.84 -19.09 -0.28 -11.04 16 13 N -0.61 -10.40 3.33 -170.52 -0.57 -10.97 16 14 C 0.12 2.00 6.40 -2.53 -0.02 1.98 16 15 C -0.12 -1.87 3.27 -88.47 -0.29 -2.16 16 16 H 0.08 1.27 8.01 -51.93 -0.42 0.86 16 17 C -0.13 -1.87 9.30 37.16 0.35 -1.53 16 18 C 0.18 3.40 3.07 -66.09 -0.20 3.20 16 19 H 0.08 1.46 7.96 -51.93 -0.41 1.05 16 20 N -0.74 -16.34 4.97 -51.65 -0.26 -16.60 16 21 C -0.25 -6.72 10.44 -15.06 -0.16 -6.88 16 22 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 23 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -28.22 13.97 55.49 0.78 -27.45 16 25 Si 0.88 21.32 27.74 -169.99 -4.71 16.60 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 29 C 0.07 1.26 5.59 -3.06 -0.02 1.25 16 30 H 0.08 0.39 5.19 -51.93 -0.27 0.12 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.46 5.25 -51.93 -0.27 0.19 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 39 H 0.07 1.14 7.99 -51.93 -0.41 0.73 16 40 H 0.07 1.06 8.04 -51.93 -0.42 0.65 16 41 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.36 8.03 5.62 -40.82 -0.23 7.80 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.06 1.02 8.01 -51.93 -0.42 0.60 16 47 H 0.07 1.25 8.00 -51.93 -0.42 0.84 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -35.71 369.12 -7.98 -43.68 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.41 Total: 7.58 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 0.04 Total: 14.39 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.55 Total: -62.83 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.91 Total: -24.99 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.60 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.71 -7.98 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082931802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.893 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds