Wall clock time and date at job start Tue Mar 31 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.49493 * 2 1 4 4 C 1.53041 * 109.49831 * 239.93587 * 2 1 3 5 5 C 1.53041 * 109.53598 * 178.64990 * 4 2 1 6 6 C 1.53192 * 109.31412 * 61.36478 * 5 4 2 7 7 N 1.46929 * 108.77529 * 305.36600 * 6 5 4 8 8 C 1.34774 * 120.62410 * 233.58750 * 7 6 5 9 9 O 1.21354 * 119.99386 * 186.56351 * 8 7 6 10 10 C 1.49445 * 120.00723 * 6.55553 * 8 7 6 11 11 O 1.21352 * 119.99572 * 6.88721 * 10 8 7 12 12 N 1.34778 * 120.00540 * 186.88768 * 10 8 7 13 13 C 1.46496 * 120.00370 * 180.02562 * 12 10 8 14 14 H 1.08999 * 110.88675 * 31.11337 * 13 12 10 15 15 C 1.55135 * 111.22330 * 267.20801 * 13 12 10 16 16 N 1.47431 * 104.71826 * 279.17510 * 15 13 12 17 17 C 1.36939 * 125.64672 * 155.82146 * 16 15 13 18 18 H 1.07997 * 119.99687 * 356.10184 * 17 16 15 19 19 C 1.38807 * 119.99869 * 176.10563 * 17 16 15 20 20 N 1.31619 * 119.99999 * 216.82980 * 19 17 16 21 21 Si 1.86797 * 120.00034 * 36.83685 * 19 17 16 22 22 H 1.48496 * 109.47244 * 267.25787 * 21 19 17 23 23 H 1.48496 * 109.47364 * 27.25792 * 21 19 17 24 24 H 1.48507 * 109.47091 * 147.25468 * 21 19 17 25 25 C 1.47022 * 108.70478 * 335.55408 * 16 15 13 26 26 C 1.54322 * 107.27026 * 1.28535 * 25 16 15 27 27 H 1.08994 * 110.72463 * 263.83040 * 26 25 16 28 28 O 1.42904 * 110.71991 * 140.55384 * 26 25 16 29 29 C 1.46924 * 118.74009 * 53.85708 * 7 6 5 30 30 H 1.09002 * 109.46980 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47137 * 300.06471 * 1 2 3 32 32 H 1.09005 * 109.46896 * 60.06483 * 1 2 3 33 33 H 1.09000 * 109.46133 * 58.63209 * 4 2 1 34 34 H 1.08997 * 109.44684 * 298.66427 * 4 2 1 35 35 H 1.09002 * 109.50082 * 301.41380 * 5 4 2 36 36 H 1.09006 * 109.49590 * 181.31928 * 5 4 2 37 37 H 1.08997 * 109.58651 * 185.57209 * 6 5 4 38 38 H 1.09000 * 109.70073 * 65.22159 * 6 5 4 39 39 H 0.97000 * 119.99585 * 359.97438 * 12 10 8 40 40 H 1.08999 * 110.49739 * 160.33374 * 15 13 12 41 41 H 1.09000 * 110.34274 * 37.93541 * 15 13 12 42 42 H 0.96996 * 119.99706 * 5.01726 * 20 19 17 43 43 H 1.09001 * 109.88361 * 120.70375 * 25 16 15 44 44 H 1.08998 * 109.88334 * 241.87182 * 25 16 15 45 45 H 0.96701 * 113.99455 * 61.45587 * 28 26 25 46 46 H 1.09007 * 109.58574 * 65.92546 * 29 7 6 47 47 H 1.08998 * 109.58517 * 186.35488 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7227 -1.2486 5 6 3.5708 -0.6939 -1.2666 6 6 4.1060 -1.4254 -0.0315 7 7 3.5053 -0.8282 1.1690 8 6 4.2819 -0.3852 2.1775 9 8 3.7743 -0.0043 3.2118 10 6 5.7681 -0.3633 2.0221 11 8 6.2698 -0.6245 0.9485 12 7 6.5512 -0.0533 3.0743 13 6 8.0081 -0.0312 2.9218 14 1 8.2885 0.2592 1.9094 15 6 8.6329 -1.4005 3.2979 16 7 8.7100 -1.3853 4.7702 17 6 8.7441 -2.4898 5.5790 18 1 8.6506 -3.4764 5.1498 19 6 8.8986 -2.3412 6.9504 20 7 9.6180 -3.2094 7.6294 21 14 8.0855 -0.9093 7.8322 22 1 9.0368 0.2282 7.9110 23 1 6.8738 -0.4901 7.0830 24 1 7.6993 -1.3276 9.2038 25 6 8.7508 0.0120 5.2258 26 6 8.6630 0.9058 3.9708 27 1 9.6569 1.2133 3.6460 28 8 7.8355 2.0444 4.2180 29 6 2.0417 -0.7287 1.2518 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5129 -0.8906 33 1 1.6577 -0.2242 -2.1390 34 1 1.6972 -1.7570 -1.2352 35 1 3.9155 0.3402 -1.2546 36 1 3.9334 -1.1883 -2.1679 37 1 5.1902 -1.3228 0.0127 38 1 3.8408 -2.4812 -0.0862 39 1 6.1502 0.1559 3.9324 40 1 9.6294 -1.4966 2.8668 41 1 7.9923 -2.2150 2.9600 42 1 10.0995 -3.9104 7.1630 43 1 7.9050 0.2122 5.8835 44 1 9.6858 0.2031 5.7523 45 1 8.1617 2.6224 4.9213 46 1 1.6096 -1.7284 1.2983 47 1 1.7636 -0.1663 2.1431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083837537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:43 Heat of formation + Delta-G solvation = -70.175888 kcal Electronic energy + Delta-G solvation = -29171.870665 eV Core-core repulsion = 25163.288538 eV Total energy + Delta-G solvation = -4008.582127 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97206 -39.36604 -38.10826 -37.71598 -35.41217 -34.40915 -33.49968 -32.04763 -31.99230 -29.08677 -27.88627 -27.34857 -26.21290 -24.27830 -23.19353 -22.48338 -20.97823 -20.79482 -19.97540 -19.75885 -17.85418 -17.39158 -17.26633 -16.85103 -15.97152 -15.80967 -15.49544 -15.17374 -14.97687 -14.52936 -14.51806 -14.28992 -14.00271 -13.62415 -13.45966 -13.21412 -13.05433 -12.84615 -12.73254 -12.42868 -12.39602 -12.11757 -11.93363 -11.56920 -11.38224 -11.31554 -11.25736 -11.10374 -10.85367 -10.70972 -10.60925 -10.41618 -10.02706 -9.71595 -9.29815 -9.06034 -8.98517 -8.79919 -8.36424 -7.19463 -6.46757 -3.18185 1.49386 2.36199 3.28178 3.36994 3.51150 3.52317 3.64024 4.16884 4.37571 4.51754 4.52828 4.58071 4.63634 4.78670 4.85643 4.96834 5.09250 5.10223 5.18722 5.26428 5.28229 5.34214 5.43260 5.45370 5.49149 5.57280 5.69051 5.72654 5.77596 5.82908 5.84036 5.88177 5.91817 6.14276 6.19586 6.29556 6.38043 6.39656 6.48919 6.74566 7.04729 7.39238 7.61494 7.71418 7.84571 8.13109 8.27073 8.93858 9.52233 10.17323 11.01202 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.003293 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.599314 B = 8499.973962 C = 8731.833816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.129 4.129 6 C 0.046 3.954 7 N -0.583 5.583 8 C 0.510 3.490 9 O -0.518 6.518 10 C 0.512 3.488 11 O -0.523 6.523 12 N -0.656 5.656 13 C 0.133 3.867 14 H 0.106 0.894 15 C 0.128 3.872 16 N -0.601 5.601 17 C -0.346 4.346 18 H 0.082 0.918 19 C -0.006 4.006 20 N -0.896 5.896 21 Si 1.040 2.960 22 H -0.295 1.295 23 H -0.288 1.288 24 H -0.297 1.297 25 C 0.076 3.924 26 C 0.085 3.915 27 H 0.083 0.917 28 O -0.559 6.559 29 C 0.112 3.888 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.160 0.840 38 H 0.061 0.939 39 H 0.419 0.581 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.267 0.733 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.381 0.619 46 H 0.071 0.929 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.328 8.557 -17.167 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.167 4.167 6 C -0.075 4.075 7 N -0.317 5.317 8 C 0.292 3.708 9 O -0.394 6.394 10 C 0.293 3.707 11 O -0.403 6.403 12 N -0.306 5.306 13 C 0.027 3.973 14 H 0.124 0.876 15 C 0.001 3.999 16 N -0.330 5.330 17 C -0.472 4.472 18 H 0.099 0.901 19 C -0.209 4.209 20 N -0.534 5.534 21 Si 0.871 3.129 22 H -0.223 1.223 23 H -0.215 1.215 24 H -0.225 1.225 25 C -0.049 4.049 26 C 0.024 3.976 27 H 0.100 0.900 28 O -0.364 6.364 29 C -0.010 4.010 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.176 0.824 38 H 0.080 0.920 39 H 0.256 0.744 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.228 0.772 46 H 0.089 0.911 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.834 8.865 -16.246 22.522 hybrid contribution 0.186 -0.391 -0.631 0.765 sum -12.648 8.474 -16.877 22.729 Atomic orbital electron populations 1.21766 0.94308 1.02101 1.02080 1.21583 0.95926 1.00128 0.94912 0.90735 1.21641 0.95907 1.00661 0.97269 1.21843 0.95256 1.01562 0.98051 1.23293 1.05702 0.95909 0.82551 1.47905 1.06427 1.58953 1.18372 1.20103 0.88027 0.78873 0.83757 1.90768 1.75017 1.46664 1.26916 1.20006 0.87721 0.78321 0.84613 1.90253 1.74650 1.49640 1.25744 1.45405 1.06535 1.65250 1.13390 1.22527 0.78751 0.96676 0.99344 0.87617 1.22064 0.97886 0.93751 0.86176 1.44656 1.87682 1.00481 1.00206 1.19874 1.52071 0.85136 0.90122 0.90050 1.25545 0.98645 1.03328 0.93413 1.70885 1.24667 1.18517 1.39362 0.84309 0.76990 0.75894 0.75666 1.22303 1.21534 1.22455 1.22434 1.00502 0.86558 0.95453 1.23178 0.93477 0.85535 0.95362 0.89966 1.86473 1.52691 1.37384 1.59833 1.21877 0.78915 1.01124 0.99118 0.92425 0.92324 0.92291 0.91796 0.91801 0.91589 0.90689 0.82361 0.92039 0.74365 0.93797 0.92799 0.92285 0.93702 0.93628 0.77174 0.91098 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.11 -0.92 2.88 -90.27 -0.26 -1.18 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -0.93 5.17 -26.69 -0.14 -1.07 16 5 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 6 C 0.05 0.53 6.27 -3.71 -0.02 0.51 16 7 N -0.58 -7.65 2.97 -173.01 -0.51 -8.17 16 8 C 0.51 8.21 7.75 -11.59 -0.09 8.12 16 9 O -0.52 -9.52 15.94 5.49 0.09 -9.44 16 10 C 0.51 8.47 7.78 -11.59 -0.09 8.38 16 11 O -0.52 -8.57 12.74 5.49 0.07 -8.50 16 12 N -0.66 -11.38 4.81 -52.04 -0.25 -11.63 16 13 C 0.13 2.22 3.31 -65.66 -0.22 2.00 16 14 H 0.11 1.60 7.54 -51.93 -0.39 1.21 16 15 C 0.13 2.51 6.95 -2.40 -0.02 2.49 16 16 N -0.60 -14.19 3.37 -169.93 -0.57 -14.76 16 17 C -0.35 -9.68 10.35 -15.06 -0.16 -9.84 16 18 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 19 C -0.01 -0.19 5.39 -17.43 -0.09 -0.28 16 20 N -0.90 -27.40 13.70 55.49 0.76 -26.64 16 21 Si 1.04 25.86 24.87 -169.99 -4.23 21.64 16 22 H -0.30 -6.87 6.92 56.52 0.39 -6.48 16 23 H -0.29 -6.92 6.35 56.52 0.36 -6.56 16 24 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 25 C 0.08 1.56 4.72 -3.07 -0.01 1.54 16 26 C 0.08 1.34 4.12 -24.90 -0.10 1.24 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 28 O -0.56 -8.06 12.67 -35.23 -0.45 -8.50 16 29 C 0.11 1.22 5.73 -3.49 -0.02 1.20 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.16 2.13 3.78 -56.78 -0.21 1.91 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.42 7.80 7.88 -40.82 -0.32 7.48 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.27 8.06 8.73 -40.82 -0.36 7.71 16 43 H 0.05 0.99 4.18 -51.93 -0.22 0.77 16 44 H 0.05 0.97 7.47 -51.93 -0.39 0.58 16 45 H 0.38 3.91 9.11 45.56 0.42 4.33 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.12 7.05 -51.93 -0.37 0.76 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -32.69 366.77 -7.21 -39.91 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.61 Total: 9.45 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -1.04 Total: 11.11 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.58 Total: -61.19 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.29 Total: -26.44 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -4.23 Total: 21.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.69 -7.21 -39.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083837537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.268 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds