Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.49493 * 2 1 4 4 C 1.53041 * 109.49831 * 239.93587 * 2 1 3 5 5 C 1.53041 * 109.53598 * 178.64990 * 4 2 1 6 6 C 1.53192 * 109.31412 * 61.36478 * 5 4 2 7 7 N 1.46929 * 108.77529 * 305.36600 * 6 5 4 8 8 C 1.34774 * 120.62410 * 233.58750 * 7 6 5 9 9 O 1.21354 * 119.99386 * 186.56351 * 8 7 6 10 10 C 1.49445 * 120.00723 * 6.55553 * 8 7 6 11 11 O 1.21352 * 119.99572 * 6.88721 * 10 8 7 12 12 N 1.34778 * 120.00540 * 186.88768 * 10 8 7 13 13 C 1.46496 * 120.00370 * 180.02562 * 12 10 8 14 14 H 1.08999 * 110.88675 * 31.11337 * 13 12 10 15 15 C 1.55135 * 111.22330 * 267.20801 * 13 12 10 16 16 N 1.47431 * 104.71826 * 279.17510 * 15 13 12 17 17 C 1.36939 * 125.64672 * 155.82146 * 16 15 13 18 18 H 1.07997 * 119.99687 * 356.10184 * 17 16 15 19 19 C 1.38807 * 119.99869 * 176.10563 * 17 16 15 20 20 N 1.31619 * 119.99999 * 216.82980 * 19 17 16 21 21 Si 1.86797 * 120.00034 * 36.83685 * 19 17 16 22 22 H 1.48496 * 109.47244 * 267.25787 * 21 19 17 23 23 H 1.48496 * 109.47364 * 27.25792 * 21 19 17 24 24 H 1.48507 * 109.47091 * 147.25468 * 21 19 17 25 25 C 1.47022 * 108.70478 * 335.55408 * 16 15 13 26 26 C 1.54322 * 107.27026 * 1.28535 * 25 16 15 27 27 H 1.08994 * 110.72463 * 263.83040 * 26 25 16 28 28 O 1.42904 * 110.71991 * 140.55384 * 26 25 16 29 29 C 1.46924 * 118.74009 * 53.85708 * 7 6 5 30 30 H 1.09002 * 109.46980 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47137 * 300.06471 * 1 2 3 32 32 H 1.09005 * 109.46896 * 60.06483 * 1 2 3 33 33 H 1.09000 * 109.46133 * 58.63209 * 4 2 1 34 34 H 1.08997 * 109.44684 * 298.66427 * 4 2 1 35 35 H 1.09002 * 109.50082 * 301.41380 * 5 4 2 36 36 H 1.09006 * 109.49590 * 181.31928 * 5 4 2 37 37 H 1.08997 * 109.58651 * 185.57209 * 6 5 4 38 38 H 1.09000 * 109.70073 * 65.22159 * 6 5 4 39 39 H 0.97000 * 119.99585 * 359.97438 * 12 10 8 40 40 H 1.08999 * 110.49739 * 160.33374 * 15 13 12 41 41 H 1.09000 * 110.34274 * 37.93541 * 15 13 12 42 42 H 0.96996 * 119.99706 * 5.01726 * 20 19 17 43 43 H 1.09001 * 109.88361 * 120.70375 * 25 16 15 44 44 H 1.08998 * 109.88334 * 241.87182 * 25 16 15 45 45 H 0.96701 * 113.99455 * 61.45587 * 28 26 25 46 46 H 1.09007 * 109.58574 * 65.92546 * 29 7 6 47 47 H 1.08998 * 109.58517 * 186.35488 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7227 -1.2486 5 6 3.5708 -0.6939 -1.2666 6 6 4.1060 -1.4254 -0.0315 7 7 3.5053 -0.8282 1.1690 8 6 4.2819 -0.3852 2.1775 9 8 3.7743 -0.0043 3.2118 10 6 5.7681 -0.3633 2.0221 11 8 6.2698 -0.6245 0.9485 12 7 6.5512 -0.0533 3.0743 13 6 8.0081 -0.0312 2.9218 14 1 8.2885 0.2592 1.9094 15 6 8.6329 -1.4005 3.2979 16 7 8.7100 -1.3853 4.7702 17 6 8.7441 -2.4898 5.5790 18 1 8.6506 -3.4764 5.1498 19 6 8.8986 -2.3412 6.9504 20 7 9.6180 -3.2094 7.6294 21 14 8.0855 -0.9093 7.8322 22 1 9.0368 0.2282 7.9110 23 1 6.8738 -0.4901 7.0830 24 1 7.6993 -1.3276 9.2038 25 6 8.7508 0.0120 5.2258 26 6 8.6630 0.9058 3.9708 27 1 9.6569 1.2133 3.6460 28 8 7.8355 2.0444 4.2180 29 6 2.0417 -0.7287 1.2518 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5129 -0.8906 33 1 1.6577 -0.2242 -2.1390 34 1 1.6972 -1.7570 -1.2352 35 1 3.9155 0.3402 -1.2546 36 1 3.9334 -1.1883 -2.1679 37 1 5.1902 -1.3228 0.0127 38 1 3.8408 -2.4812 -0.0862 39 1 6.1502 0.1559 3.9324 40 1 9.6294 -1.4966 2.8668 41 1 7.9923 -2.2150 2.9600 42 1 10.0995 -3.9104 7.1630 43 1 7.9050 0.2122 5.8835 44 1 9.6858 0.2031 5.7523 45 1 8.1617 2.6224 4.9213 46 1 1.6096 -1.7284 1.2983 47 1 1.7636 -0.1663 2.1431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083837537.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -96.865276 kcal Electronic energy + Delta-G solvation = -29173.028004 eV Core-core repulsion = 25163.288538 eV Total energy + Delta-G solvation = -4009.739466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17497 -40.62232 -39.36508 -38.82345 -36.78758 -35.72863 -34.65313 -33.92473 -32.82888 -30.72329 -29.39815 -28.26121 -27.16211 -25.94671 -24.46669 -23.27200 -22.65564 -21.88188 -21.41218 -20.67965 -19.65080 -18.81430 -18.51877 -18.06997 -17.32377 -17.01735 -16.80331 -16.37302 -16.10168 -15.91448 -15.70980 -15.28946 -15.24884 -15.08466 -14.86220 -14.42887 -14.31366 -14.08064 -13.93432 -13.64230 -13.49463 -13.21591 -13.10995 -12.96394 -12.76286 -12.57340 -12.45007 -12.05093 -12.00201 -11.87607 -11.77336 -11.63496 -11.55140 -11.34559 -10.94194 -10.54185 -10.36213 -10.15393 -9.83631 -9.17259 -8.72751 -5.35564 0.22510 1.19988 1.37210 1.51838 1.67360 2.01618 2.36580 2.51206 2.81555 3.05975 3.20492 3.32261 3.62177 3.67432 3.72111 3.81498 3.91793 4.08510 4.13597 4.28949 4.34048 4.38935 4.44204 4.52788 4.60196 4.66566 4.74909 4.77047 4.80202 4.84149 4.87462 4.94073 4.98000 5.05043 5.14235 5.19307 5.27674 5.33977 5.45588 5.52305 5.56978 5.90232 6.06366 6.15281 6.60640 6.76608 6.79389 6.86050 7.44968 8.10104 8.76314 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.003293 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.599314 B = 8499.973962 C = 8731.833816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.063 0.937 4 C -0.113 4.113 5 C -0.124 4.124 6 C 0.042 3.958 7 N -0.575 5.575 8 C 0.502 3.498 9 O -0.551 6.551 10 C 0.511 3.489 11 O -0.523 6.523 12 N -0.664 5.664 13 C 0.139 3.861 14 H 0.129 0.871 15 C 0.125 3.875 16 N -0.621 5.621 17 C -0.337 4.337 18 H 0.048 0.952 19 C -0.060 4.060 20 N -0.933 5.933 21 Si 1.086 2.914 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.307 1.307 25 C 0.069 3.931 26 C 0.105 3.895 27 H 0.118 0.882 28 O -0.562 6.562 29 C 0.106 3.894 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.073 0.927 39 H 0.412 0.588 40 H 0.060 0.940 41 H 0.035 0.965 42 H 0.254 0.746 43 H 0.035 0.965 44 H 0.042 0.958 45 H 0.401 0.599 46 H 0.084 0.916 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 10.638 -19.384 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.162 4.162 6 C -0.078 4.078 7 N -0.307 5.307 8 C 0.285 3.715 9 O -0.429 6.429 10 C 0.293 3.707 11 O -0.402 6.402 12 N -0.313 5.313 13 C 0.034 3.966 14 H 0.147 0.853 15 C -0.001 4.001 16 N -0.350 5.350 17 C -0.464 4.464 18 H 0.066 0.934 19 C -0.257 4.257 20 N -0.574 5.574 21 Si 0.914 3.086 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.236 1.236 25 C -0.056 4.056 26 C 0.045 3.955 27 H 0.135 0.865 28 O -0.370 6.370 29 C -0.016 4.016 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.159 0.841 38 H 0.092 0.908 39 H 0.248 0.752 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.252 0.748 46 H 0.103 0.897 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.964 10.975 -18.544 25.678 hybrid contribution 0.505 -1.143 -0.080 1.252 sum -13.459 9.832 -18.624 24.993 Atomic orbital electron populations 1.21740 0.92643 1.02830 1.02609 1.21548 0.97202 0.99174 0.94064 0.91874 1.21638 0.94735 1.01323 0.97359 1.21819 0.96288 1.00726 0.97362 1.23339 1.04700 0.96894 0.82886 1.48099 1.07331 1.57334 1.17938 1.20124 0.88031 0.79278 0.84103 1.90746 1.75342 1.48657 1.28161 1.20156 0.88044 0.78003 0.84502 1.90287 1.74947 1.49395 1.25606 1.45490 1.06862 1.65640 1.13277 1.22500 0.78358 0.94935 1.00810 0.85333 1.22201 0.98595 0.95302 0.83977 1.44664 1.87741 1.00873 1.01687 1.19732 1.50272 0.85611 0.90806 0.93359 1.26692 0.99009 1.05467 0.94580 1.70983 1.27067 1.19806 1.39575 0.83642 0.76917 0.74163 0.73900 1.19187 1.20458 1.23605 1.22609 0.99610 0.85575 0.97821 1.23017 0.95081 0.85083 0.92301 0.86488 1.86453 1.52865 1.36848 1.60805 1.22104 0.77508 1.02045 0.99906 0.91587 0.92603 0.91011 0.90052 0.90850 0.92609 0.88839 0.84128 0.90832 0.75177 0.92225 0.94662 0.93686 0.94718 0.94034 0.74792 0.89744 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.20 71.98 0.66 -0.92 16 2 C -0.10 -1.55 2.88 -10.57 -0.03 -1.58 16 3 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 4 C -0.11 -1.45 5.17 30.62 0.16 -1.29 16 5 C -0.12 -1.98 6.08 30.67 0.19 -1.79 16 6 C 0.04 0.90 6.27 86.36 0.54 1.44 16 7 N -0.57 -14.65 2.97 -819.64 -2.43 -17.08 16 8 C 0.50 16.13 7.75 87.27 0.68 16.81 16 9 O -0.55 -20.49 15.94 -3.26 -0.05 -20.54 16 10 C 0.51 16.63 7.78 87.27 0.68 17.31 16 11 O -0.52 -16.61 12.74 -3.25 -0.04 -16.65 16 12 N -0.66 -22.38 4.81 -436.93 -2.10 -24.48 16 13 C 0.14 4.36 3.31 46.46 0.15 4.51 16 14 H 0.13 3.50 7.54 -2.39 -0.02 3.48 16 15 C 0.13 4.81 6.95 86.93 0.60 5.41 16 16 N -0.62 -29.16 3.37 -691.53 -2.33 -31.49 16 17 C -0.34 -19.32 10.35 84.03 0.87 -18.45 16 18 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 19 C -0.06 -3.56 5.39 84.86 0.46 -3.10 16 20 N -0.93 -58.91 13.70 21.65 0.30 -58.62 16 21 Si 1.09 52.72 24.87 68.60 1.71 54.42 16 22 H -0.27 -11.54 6.92 99.48 0.69 -10.85 16 23 H -0.28 -12.87 6.35 99.48 0.63 -12.24 16 24 H -0.31 -15.35 7.11 99.48 0.71 -14.65 16 25 C 0.07 2.69 4.72 86.73 0.41 3.10 16 26 C 0.11 3.00 4.12 31.78 0.13 3.14 16 27 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 28 O -0.56 -14.25 12.67 -148.98 -1.89 -16.14 16 29 C 0.11 2.19 5.73 86.51 0.50 2.69 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.17 8.14 -2.38 -0.02 1.16 16 37 H 0.14 3.64 3.78 -79.19 -0.30 3.34 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 39 H 0.41 15.09 7.88 -92.71 -0.73 14.36 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.25 16.09 8.73 -92.71 -0.81 15.28 16 43 H 0.04 1.46 4.18 -2.39 -0.01 1.45 16 44 H 0.04 1.67 7.47 -2.39 -0.02 1.65 16 45 H 0.40 6.67 9.11 -74.06 -0.67 5.99 16 46 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 47 H 0.08 1.87 7.05 -2.39 -0.02 1.85 16 Total: -1.00 -73.14 366.77 -1.67 -74.81 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.82 Total: 28.50 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 5.99 Total: 27.27 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -6.56 Total: -131.66 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -1.98 Total: -53.33 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 1.71 Total: 54.42 kcal Total: -73.14 -1.67 -74.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083837537.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.054 kcal (2) G-P(sol) polarization free energy of solvation -73.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds