Wall clock time and date at job start Tue Mar 31 2020 06:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.64250 * 2 1 4 4 C 1.54322 * 110.71814 * 236.67220 * 2 1 3 5 5 N 1.47022 * 107.27271 * 219.44253 * 4 2 1 6 6 C 1.36940 * 125.64885 * 178.89396 * 5 4 2 7 7 H 1.08000 * 119.99447 * 174.87892 * 6 5 4 8 8 C 1.38805 * 119.99928 * 354.88369 * 6 5 4 9 9 N 1.31613 * 120.00339 * 7.05872 * 8 6 5 10 10 Si 1.86802 * 119.99653 * 187.06713 * 8 6 5 11 11 H 1.48501 * 109.47520 * 94.98432 * 10 8 6 12 12 H 1.48501 * 109.46920 * 214.98541 * 10 8 6 13 13 H 1.48501 * 109.47223 * 334.98395 * 10 8 6 14 14 C 1.47428 * 108.69920 * 358.93806 * 5 4 2 15 15 C 1.54902 * 104.83150 * 24.12756 * 14 5 4 16 16 H 1.09004 * 111.00137 * 81.06801 * 15 14 5 17 17 C 1.53006 * 111.03818 * 204.89781 * 15 14 5 18 18 N 1.46496 * 109.47297 * 290.40239 * 17 15 14 19 19 C 1.34778 * 120.00166 * 179.97438 * 18 17 15 20 20 O 1.21281 * 119.99883 * 359.97438 * 19 18 17 21 21 C 1.50695 * 120.00242 * 179.97438 * 19 18 17 22 22 H 1.09004 * 110.33425 * 305.79923 * 21 19 18 23 23 C 1.54481 * 110.37428 * 68.16412 * 21 19 18 24 24 C 1.54502 * 104.06672 * 142.80798 * 23 21 19 25 25 C 1.54482 * 104.05918 * 0.02562 * 24 23 21 26 26 H 1.08998 * 110.37671 * 94.85453 * 25 24 23 27 27 C 1.50703 * 110.36919 * 217.18833 * 25 24 23 28 28 N 1.34775 * 119.99956 * 291.83274 * 27 25 24 29 29 O 1.21274 * 120.00249 * 111.83847 * 27 25 24 30 30 O 1.44421 * 104.80466 * 336.01580 * 25 24 23 31 31 H 1.09004 * 109.46309 * 296.85513 * 1 2 3 32 32 H 1.09000 * 109.47324 * 56.85105 * 1 2 3 33 33 H 1.08995 * 109.46821 * 176.85632 * 1 2 3 34 34 H 1.08998 * 109.88119 * 338.85826 * 4 2 1 35 35 H 1.09003 * 109.88801 * 100.02106 * 4 2 1 36 36 H 0.97002 * 120.00203 * 179.97438 * 9 8 6 37 37 H 1.09002 * 110.36388 * 265.29170 * 14 5 4 38 38 H 1.09000 * 110.36480 * 142.97182 * 14 5 4 39 39 H 1.09005 * 109.46255 * 50.39877 * 17 15 14 40 40 H 1.08995 * 109.47404 * 170.39761 * 17 15 14 41 41 H 0.97004 * 120.00248 * 359.97438 * 18 17 15 42 42 H 1.09004 * 110.51297 * 261.46063 * 23 21 19 43 43 H 1.09005 * 110.51010 * 24.16561 * 23 21 19 44 44 H 1.08991 * 110.51508 * 241.35971 * 24 23 21 45 45 H 1.08999 * 110.62636 * 118.70290 * 24 23 21 46 46 H 0.97001 * 120.00016 * 0.02562 * 28 27 25 47 47 H 0.97002 * 120.00356 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7931 -1.2060 5 7 3.2445 -1.5519 -0.7367 6 6 4.0033 -2.4005 -1.4978 7 1 4.8932 -2.8492 -1.0817 8 6 3.6287 -2.6839 -2.8039 9 7 2.6271 -2.0336 -3.3572 10 14 4.5461 -3.9885 -3.7765 11 1 3.8297 -5.2845 -3.6648 12 1 4.6171 -3.5835 -5.2034 13 1 5.9209 -4.1347 -3.2344 14 6 3.4633 -1.2486 0.6894 15 6 2.0791 -0.7934 1.2149 16 1 1.4453 -1.6512 1.4401 17 6 2.2270 0.1117 2.4396 18 7 2.7053 -0.6789 3.5763 19 6 2.9108 -0.0874 4.7698 20 8 2.7002 1.0996 4.9026 21 6 3.4022 -0.9009 5.9393 22 1 2.7494 -1.7578 6.1056 23 6 4.8549 -1.3674 5.6974 24 6 5.5146 -1.2798 7.0917 25 6 4.3822 -0.7712 8.0113 26 1 3.8816 -1.6094 8.4960 27 6 4.9316 0.1806 9.0426 28 7 5.7495 -0.2749 10.0121 29 8 4.6376 1.3564 9.0002 30 8 3.4701 -0.0834 7.1278 31 1 -0.3632 0.4643 0.9169 32 1 -0.3634 0.5619 -0.8604 33 1 -0.3633 -1.0261 -0.0564 34 1 1.3129 -1.4783 -1.5752 35 1 2.3740 -0.1056 -1.9977 36 1 2.3655 -2.2314 -4.2701 37 1 4.1932 -0.4465 0.7989 38 1 3.7962 -2.1406 1.2201 39 1 2.9431 0.9041 2.2212 40 1 1.2608 0.5525 2.6845 41 1 2.8741 -1.6282 3.4701 42 1 4.8704 -2.3941 5.3313 43 1 5.3575 -0.7028 4.9947 44 1 6.3432 -0.5719 7.0784 45 1 5.8578 -2.2620 7.4166 46 1 5.9849 -1.2153 10.0459 47 1 6.1029 0.3376 10.6761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092965213.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:33 Heat of formation + Delta-G solvation = -98.659442 kcal Electronic energy + Delta-G solvation = -27904.091571 eV Core-core repulsion = 23894.274305 eV Total energy + Delta-G solvation = -4009.817267 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87507 -39.61393 -38.42270 -37.72238 -34.69419 -34.20457 -33.03621 -32.42634 -30.77775 -30.67367 -28.99474 -26.12755 -25.51696 -24.54080 -22.79751 -22.35934 -21.00289 -20.60858 -20.00352 -19.25322 -18.30716 -17.62629 -17.01993 -16.88022 -16.59006 -16.17723 -15.41187 -15.13880 -14.79667 -14.75033 -14.53200 -14.30221 -14.02696 -13.78278 -13.56295 -13.17302 -12.92933 -12.55262 -12.53617 -12.19207 -12.07581 -11.79999 -11.67752 -11.38647 -11.33744 -11.23520 -10.82968 -10.80512 -10.62048 -10.19200 -10.13065 -10.08350 -10.01121 -9.97073 -9.88577 -9.65449 -9.50596 -8.97721 -8.60114 -6.84926 -5.74618 -3.07117 2.19080 2.48252 2.60817 3.11297 3.37431 3.42471 3.44991 3.75316 4.00550 4.28682 4.36072 4.46657 4.51254 4.58595 4.69404 4.93522 5.01670 5.10012 5.20636 5.25179 5.32189 5.42053 5.50942 5.55510 5.57538 5.75172 5.86958 6.01850 6.09066 6.13726 6.18508 6.27431 6.36337 6.43351 6.48453 6.54925 6.62235 6.75399 6.85935 6.93006 7.50190 7.54622 7.63767 7.81945 7.85223 8.22173 8.23918 9.19434 9.80184 10.46856 11.37318 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019419 B = 0.002418 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.516034 B =11575.253169 C =12764.469257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.607 5.607 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.142 3.858 15 C -0.112 4.112 16 H 0.081 0.919 17 C 0.134 3.866 18 N -0.721 5.721 19 C 0.515 3.485 20 O -0.518 6.518 21 C 0.055 3.945 22 H 0.099 0.901 23 C -0.144 4.144 24 C -0.142 4.142 25 C 0.052 3.948 26 H 0.099 0.901 27 C 0.521 3.479 28 N -0.853 5.853 29 O -0.513 6.513 30 O -0.314 6.314 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.040 0.960 36 H 0.252 0.748 37 H 0.018 0.982 38 H 0.036 0.964 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.402 0.598 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.401 0.599 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 -3.253 23.620 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.058 3.942 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.016 3.984 15 C -0.132 4.132 16 H 0.099 0.901 17 C 0.010 3.990 18 N -0.374 5.374 19 C 0.299 3.701 20 O -0.392 6.392 21 C -0.007 4.007 22 H 0.117 0.883 23 C -0.182 4.182 24 C -0.180 4.180 25 C -0.010 4.010 26 H 0.117 0.883 27 C 0.304 3.696 28 N -0.420 5.420 29 O -0.386 6.386 30 O -0.231 6.231 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.236 0.764 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.230 0.770 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.839 -1.486 23.311 23.531 hybrid contribution 0.926 -1.628 -0.382 1.911 sum 3.765 -3.113 22.929 23.444 Atomic orbital electron populations 1.21699 0.95283 1.01614 1.00616 1.22438 0.95205 0.99128 0.96261 0.91398 1.21235 0.89220 0.93006 0.90747 1.44473 1.32773 1.51474 1.04556 1.19038 1.04509 1.18350 0.93920 0.90500 1.24822 0.98525 0.99890 0.97131 1.69974 1.30154 1.42594 1.13858 0.86134 0.78847 0.81563 0.79431 1.21642 1.21775 1.20676 1.21575 0.93040 0.96949 0.86848 1.22675 0.99422 0.98071 0.93057 0.90096 1.21422 0.99537 0.93993 0.84003 1.45947 1.68215 1.13241 1.09993 1.20021 0.78383 0.88172 0.83531 1.90764 1.49701 1.15257 1.83477 1.22948 0.97909 0.93495 0.86319 0.88317 1.22932 0.93664 1.03621 0.97959 1.22913 0.98085 1.02794 0.94182 1.22914 0.91796 0.94064 0.92192 0.88303 1.20178 0.78667 0.88934 0.81800 1.43724 1.52033 1.14109 1.32134 1.90830 1.57360 1.17243 1.73168 1.89424 1.63252 1.45093 1.25282 0.93617 0.92759 0.92708 0.93131 0.94227 0.93733 0.96387 0.94618 0.91311 0.91513 0.76422 0.88647 0.89377 0.89777 0.88963 0.77042 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.16 37.16 0.34 -1.74 16 2 C -0.11 -1.98 3.02 -88.79 -0.27 -2.24 16 3 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 4 C 0.18 4.31 4.98 -3.07 -0.02 4.29 16 5 N -0.61 -15.01 3.39 -170.08 -0.58 -15.59 16 6 C -0.23 -6.26 10.27 -15.06 -0.15 -6.41 16 7 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 8 C -0.01 -0.20 5.48 -17.44 -0.10 -0.29 16 9 N -0.92 -26.63 10.36 55.49 0.57 -26.06 16 10 Si 0.91 21.68 29.56 -169.99 -5.02 16.66 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 14 C 0.14 2.74 6.56 -2.53 -0.02 2.72 16 15 C -0.11 -1.80 2.51 -88.48 -0.22 -2.02 16 16 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 17 C 0.13 1.92 5.12 -4.04 -0.02 1.89 16 18 N -0.72 -8.79 5.45 -60.29 -0.33 -9.11 16 19 C 0.52 7.18 7.07 -10.99 -0.08 7.10 16 20 O -0.52 -9.88 16.56 -13.62 -0.23 -10.11 16 21 C 0.05 0.56 3.71 -27.11 -0.10 0.46 16 22 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 23 C -0.14 -1.06 6.62 -25.17 -0.17 -1.22 16 24 C -0.14 -0.83 6.62 -25.16 -0.17 -0.99 16 25 C 0.05 0.43 3.71 -27.10 -0.10 0.33 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 27 C 0.52 5.10 7.34 -10.98 -0.08 5.02 16 28 N -0.85 -3.80 8.87 31.22 0.28 -3.52 16 29 O -0.51 -8.12 17.39 -13.63 -0.24 -8.35 16 30 O -0.31 -4.18 10.17 -64.20 -0.65 -4.83 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.86 8.06 -51.93 -0.42 0.45 16 34 H 0.05 1.32 6.92 -51.93 -0.36 0.96 16 35 H 0.04 1.05 7.61 -51.93 -0.40 0.66 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 37 H 0.02 0.36 7.96 -51.93 -0.41 -0.05 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.40 3.87 8.44 -40.82 -0.34 3.52 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.80 7.87 -51.93 -0.41 0.39 16 44 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 45 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.40 0.34 8.83 -40.82 -0.36 -0.02 16 47 H 0.41 1.52 8.93 -40.82 -0.36 1.16 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -38.90 383.12 -9.22 -48.12 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.65 Total: 0.15 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -1.15 Total: 6.87 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.05 Total: -54.28 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -1.12 Total: -23.29 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.90 -9.22 -48.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092965213.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.542 kcal (2) G-P(sol) polarization free energy of solvation -38.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds