Wall clock time and date at job start Tue Mar 31 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08996 * 110.63571 * 2 1 4 4 C 1.54324 * 110.86654 * 236.75415 * 2 1 3 5 5 N 1.47022 * 107.26502 * 219.37034 * 4 2 1 6 6 C 1.36937 * 125.64515 * 178.98660 * 5 4 2 7 7 H 1.08005 * 120.00126 * 179.97438 * 6 5 4 8 8 C 1.38810 * 120.00373 * 359.97438 * 6 5 4 9 9 N 1.31625 * 119.99891 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00327 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46606 * 90.00144 * 10 8 6 12 12 H 1.48500 * 109.47206 * 209.99725 * 10 8 6 13 13 H 1.48499 * 109.46995 * 330.00175 * 10 8 6 14 14 C 1.47426 * 108.70662 * 358.94531 * 5 4 2 15 15 C 1.54908 * 104.82853 * 24.12592 * 14 5 4 16 16 H 1.09002 * 111.03739 * 81.08248 * 15 14 5 17 17 C 1.53005 * 111.00103 * 204.91810 * 15 14 5 18 18 N 1.46503 * 109.46891 * 287.19775 * 17 15 14 19 19 C 1.34776 * 119.99729 * 180.02562 * 18 17 15 20 20 O 1.21284 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00101 * 179.97438 * 19 18 17 22 22 N 1.46501 * 109.47225 * 179.97438 * 21 19 18 23 23 C 1.46091 * 118.72815 * 90.00153 * 22 21 19 24 24 C 1.53016 * 109.92561 * 161.61529 * 23 22 21 25 25 O 1.43245 * 108.66793 * 49.16308 * 24 23 22 26 26 C 1.42960 * 112.99044 * 291.63676 * 25 24 23 27 27 C 1.33869 * 118.73008 * 269.97809 * 22 21 19 28 28 O 1.21282 * 118.83488 * 1.90701 * 27 22 21 29 29 H 1.08996 * 109.46907 * 296.85874 * 1 2 3 30 30 H 1.08998 * 109.47005 * 56.85385 * 1 2 3 31 31 H 1.08994 * 109.46969 * 176.85865 * 1 2 3 32 32 H 1.08998 * 109.88633 * 338.78669 * 4 2 1 33 33 H 1.08998 * 109.88520 * 99.95734 * 4 2 1 34 34 H 0.96996 * 120.00190 * 180.02562 * 9 8 6 35 35 H 1.08998 * 110.36362 * 265.29052 * 14 5 4 36 36 H 1.09001 * 110.36914 * 142.96437 * 14 5 4 37 37 H 1.08999 * 109.46850 * 167.19817 * 17 15 14 38 38 H 1.08996 * 109.47213 * 47.19957 * 17 15 14 39 39 H 0.96995 * 120.00230 * 0.02562 * 18 17 15 40 40 H 1.09008 * 109.47043 * 59.99915 * 21 19 18 41 41 H 1.08996 * 109.47233 * 300.00082 * 21 19 18 42 42 H 1.09006 * 109.39767 * 41.47980 * 23 22 21 43 43 H 1.09000 * 109.32215 * 281.71140 * 23 22 21 44 44 H 1.08998 * 109.61077 * 289.41065 * 24 23 22 45 45 H 1.09005 * 109.60374 * 168.91708 * 24 23 22 46 46 H 1.09003 * 109.41932 * 169.70012 * 26 25 24 47 47 H 1.08997 * 109.41682 * 289.49301 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2060 5 7 3.2494 -1.5470 -0.7354 6 6 4.0125 -2.3917 -1.4966 7 1 4.8556 -2.9029 -1.0556 8 6 3.7026 -2.5909 -2.8349 9 7 2.6755 -1.9676 -3.3725 10 14 4.7440 -3.7427 -3.8734 11 1 4.1879 -5.1175 -3.7966 12 1 4.7331 -3.2825 -5.2852 13 1 6.1389 -3.7437 -3.3638 14 6 3.4652 -1.2447 0.6913 15 6 2.0790 -0.7934 1.2150 16 1 1.4465 -1.6526 1.4387 17 6 2.2237 0.1111 2.4406 18 7 2.6289 -0.6933 3.5960 19 6 2.8178 -0.1049 4.7938 20 8 2.6527 1.0905 4.9150 21 6 3.2340 -0.9323 5.9825 22 7 3.3727 -0.0662 7.1559 23 6 2.2080 0.1498 8.0109 24 6 2.6539 0.6775 9.3762 25 8 3.5575 1.7702 9.1725 26 6 4.8060 1.3643 8.6067 27 6 4.5620 0.4963 7.4035 28 8 5.4749 0.2988 6.6299 29 1 -0.3633 0.4643 0.9168 30 1 -0.3633 0.5619 -0.8604 31 1 -0.3633 -1.0261 -0.0563 32 1 1.3190 -1.4773 -1.5771 33 1 2.3775 -0.1016 -1.9964 34 1 2.4587 -2.1071 -4.3075 35 1 4.1929 -0.4410 0.8029 36 1 3.7993 -2.1364 1.2217 37 1 1.2693 0.5938 2.6506 38 1 2.9797 0.8712 2.2439 39 1 2.7613 -1.6493 3.4991 40 1 4.1886 -1.4151 5.7728 41 1 2.4779 -1.6924 6.1788 42 1 1.6763 -0.7926 8.1432 43 1 1.5452 0.8763 7.5408 44 1 3.1580 -0.1157 9.9281 45 1 1.7847 1.0213 9.9370 46 1 5.3724 2.2465 8.3081 47 1 5.3748 0.8038 9.3484 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102051114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:37 Heat of formation + Delta-G solvation = -82.225272 kcal Electronic energy + Delta-G solvation = -28065.056310 eV Core-core repulsion = 24055.951683 eV Total energy + Delta-G solvation = -4009.104627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13731 -39.49195 -38.09719 -37.87853 -35.67273 -34.61767 -32.95050 -30.92696 -30.72542 -30.01352 -28.81380 -26.56972 -25.83571 -24.88044 -24.23330 -22.75225 -20.91825 -20.03405 -19.53050 -19.10208 -18.10232 -17.53078 -17.44690 -16.74152 -16.15379 -15.94609 -15.77616 -15.36251 -14.98537 -14.76924 -14.38569 -14.15619 -13.89074 -13.76151 -13.52349 -13.35342 -13.20481 -12.91689 -12.52702 -12.38087 -12.12709 -11.82411 -11.71254 -11.64592 -11.39118 -11.21157 -10.97246 -10.81599 -10.77152 -10.30615 -10.10170 -9.99457 -9.91335 -9.81366 -9.75668 -9.57909 -9.03100 -8.96448 -8.59876 -6.82479 -5.70741 -3.04212 2.12684 2.35616 2.60625 3.25658 3.32949 3.39908 3.45178 3.47223 3.91007 4.29493 4.48251 4.49603 4.59483 4.71292 4.76962 4.82407 4.95976 5.07708 5.11667 5.16306 5.21174 5.33136 5.35965 5.53560 5.56269 5.75216 5.77620 5.87471 6.02514 6.10236 6.18245 6.29118 6.31325 6.44661 6.48927 6.58265 6.62087 6.76243 6.94119 6.95245 7.49826 7.57292 7.64731 7.71145 7.84102 8.21477 8.26579 9.22727 9.82998 10.49224 11.40902 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.002365 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.271918 B =11835.143285 C =12652.986945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 H 0.067 0.933 4 C 0.184 3.816 5 N -0.607 5.607 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.922 5.922 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.142 3.858 15 C -0.112 4.112 16 H 0.080 0.920 17 C 0.134 3.866 18 N -0.722 5.722 19 C 0.496 3.504 20 O -0.535 6.535 21 C 0.089 3.911 22 N -0.587 5.587 23 C 0.079 3.921 24 C 0.045 3.955 25 O -0.368 6.368 26 C 0.054 3.946 27 C 0.492 3.508 28 O -0.534 6.534 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.252 0.748 35 H 0.019 0.981 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.117 0.883 46 H 0.132 0.868 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 2.347 26.317 26.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 H 0.085 0.915 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.356 4.356 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.570 5.570 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.098 0.902 17 C 0.010 3.990 18 N -0.374 5.374 19 C 0.280 3.720 20 O -0.412 6.412 21 C -0.037 4.037 22 N -0.320 5.320 23 C -0.044 4.044 24 C -0.032 4.032 25 O -0.286 6.286 26 C -0.026 4.026 27 C 0.279 3.721 28 O -0.411 6.411 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.236 0.764 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.135 0.865 46 H 0.150 0.850 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.979 3.256 25.825 26.331 hybrid contribution 0.521 -1.356 -0.898 1.708 sum -3.458 1.900 24.926 25.237 Atomic orbital electron populations 1.21686 0.95313 1.01579 1.00528 1.22443 0.95131 0.99152 0.96355 0.91470 1.21217 0.89044 0.93110 0.90709 1.44471 1.32440 1.51688 1.04683 1.19056 1.07452 1.17771 0.91323 0.90497 1.24805 0.98464 1.00373 0.96885 1.69964 1.28822 1.45575 1.12596 0.86120 0.79573 0.80288 0.79796 1.21638 1.21677 1.20711 1.21588 0.92999 0.97075 0.86818 1.22670 0.99401 0.98011 0.93093 0.90164 1.21392 1.00002 0.93796 0.83773 1.46041 1.69880 1.12317 1.09204 1.21002 0.77467 0.88965 0.84582 1.90706 1.50714 1.15058 1.84707 1.21409 1.05067 0.92616 0.84619 1.47015 1.10618 1.48562 1.25846 1.22250 0.88387 1.02504 0.91266 1.23015 0.94883 0.90239 0.95058 1.88220 1.25590 1.32197 1.82598 1.22820 0.87509 1.00235 0.92008 1.21015 0.82285 0.80518 0.88250 1.90779 1.42172 1.60552 1.47584 0.93721 0.92761 0.92720 0.93297 0.94048 0.93774 0.96316 0.94601 0.91726 0.91475 0.76411 0.86473 0.87282 0.89437 0.90020 0.91764 0.86504 0.85040 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.17 37.16 0.34 -1.73 16 2 C -0.11 -2.03 3.01 -88.78 -0.27 -2.29 16 3 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 4 C 0.18 4.43 4.97 -3.06 -0.02 4.41 16 5 N -0.61 -15.47 3.39 -170.07 -0.58 -16.05 16 6 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 7 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.16 10.31 55.49 0.57 -26.58 16 10 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.14 2.88 6.65 -2.53 -0.02 2.86 16 15 C -0.11 -1.85 2.49 -88.47 -0.22 -2.07 16 16 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 17 C 0.13 1.98 5.13 -4.04 -0.02 1.95 16 18 N -0.72 -9.08 5.50 -60.29 -0.33 -9.41 16 19 C 0.50 6.65 7.89 -10.99 -0.09 6.56 16 20 O -0.54 -9.40 16.43 5.55 0.09 -9.31 16 21 C 0.09 0.86 5.77 -5.19 -0.03 0.83 16 22 N -0.59 -5.85 2.32 -175.78 -0.41 -6.25 16 23 C 0.08 0.51 6.67 -4.25 -0.03 0.49 16 24 C 0.05 0.23 6.90 37.17 0.26 0.49 16 25 O -0.37 -3.13 10.85 -35.23 -0.38 -3.51 16 26 C 0.05 0.45 6.98 35.84 0.25 0.70 16 27 C 0.49 5.82 7.58 -11.56 -0.09 5.73 16 28 O -0.53 -8.43 16.39 5.56 0.09 -8.34 16 29 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.05 1.29 7.02 -51.93 -0.36 0.93 16 33 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 34 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.07 1.12 7.96 -51.93 -0.41 0.71 16 39 H 0.40 4.12 8.47 -40.82 -0.35 3.78 16 40 H 0.12 1.16 7.29 -51.92 -0.38 0.78 16 41 H 0.11 0.60 7.93 -51.93 -0.41 0.19 16 42 H 0.09 0.31 7.99 -51.93 -0.42 -0.11 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.23 8.10 -51.93 -0.42 -0.19 16 45 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -37.29 380.55 -8.14 -45.43 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.73 Total: 0.06 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -0.18 Total: 11.04 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.74 Total: -58.30 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.20 Total: -21.16 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.29 -8.14 -45.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102051114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.796 kcal (2) G-P(sol) polarization free energy of solvation -37.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds