Wall clock time and date at job start Tue Mar 31 2020 05:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46851 * 2 1 4 4 O 1.42901 * 109.46807 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99607 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46876 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09001 * 110.85718 * 322.67178 * 9 8 6 11 11 C 1.54632 * 110.96962 * 86.45510 * 9 8 6 12 12 C 1.51278 * 104.19463 * 142.91861 * 11 9 8 13 13 O 1.21282 * 124.93916 * 163.71371 * 12 11 9 14 14 N 1.34412 * 110.11694 * 343.74777 * 12 11 9 15 15 C 1.46503 * 124.34978 * 179.57404 * 14 12 11 16 16 C 1.53948 * 113.74317 * 36.64839 * 15 14 12 17 17 N 1.47586 * 86.11585 * 222.04956 * 16 15 14 18 18 C 1.36940 * 134.48731 * 204.63792 * 17 16 15 19 19 H 1.08000 * 119.99688 * 180.02562 * 18 17 16 20 20 C 1.38805 * 120.00168 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00276 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99889 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47241 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47449 * 119.99881 * 22 20 18 25 25 H 1.48505 * 109.47055 * 239.99814 * 22 20 18 26 26 C 1.47576 * 91.01377 * 24.64202 * 17 16 15 27 27 C 1.46764 * 111.30359 * 359.59513 * 14 12 11 28 28 H 1.09003 * 109.46844 * 299.99813 * 1 2 3 29 29 H 1.08992 * 109.47104 * 59.99858 * 1 2 3 30 30 H 1.08998 * 109.46894 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46715 * 240.00628 * 2 1 3 32 32 H 1.08993 * 109.47591 * 119.99939 * 2 1 3 33 33 H 1.09003 * 109.47244 * 60.00432 * 3 2 1 34 34 H 1.09001 * 109.46822 * 300.00035 * 3 2 1 35 35 H 1.09004 * 109.47206 * 60.00168 * 5 4 3 36 36 H 1.08994 * 109.47548 * 299.99825 * 5 4 3 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 38 38 H 1.09002 * 110.48765 * 261.60135 * 11 9 8 39 39 H 1.08999 * 110.48131 * 24.23880 * 11 9 8 40 40 H 1.09004 * 112.94818 * 168.38828 * 15 14 12 41 41 H 1.09001 * 113.76553 * 336.35113 * 16 15 14 42 42 H 1.09002 * 113.76390 * 107.74774 * 16 15 14 43 43 H 0.97002 * 120.00030 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.76745 * 221.05577 * 26 17 16 45 45 H 1.09003 * 113.77329 * 89.66475 * 26 17 16 46 46 H 1.08997 * 110.24337 * 258.01476 * 27 14 12 47 47 H 1.08996 * 110.24586 * 136.01735 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5525 2.6291 -0.0012 7 8 6.0741 1.5342 -0.0012 8 7 6.3164 3.7394 -0.0074 9 6 7.7768 3.6238 -0.0134 10 1 8.1024 2.7874 0.6050 11 6 8.3151 3.4875 -1.4566 12 6 9.6067 4.2751 -1.4467 13 8 10.4759 4.1945 -2.2887 14 7 9.6510 5.0767 -0.3687 15 6 10.7673 5.9696 -0.0479 16 6 11.4183 6.6169 -1.2838 17 7 12.7091 6.3418 -0.6234 18 6 13.9618 6.8898 -0.6993 19 1 14.7622 6.4937 -0.0919 20 6 14.2029 7.9544 -1.5567 21 7 13.2277 8.4369 -2.2973 22 14 15.9119 8.7014 -1.6607 23 1 16.8233 7.9831 -0.7341 24 1 16.4215 8.5800 -3.0501 25 1 15.8492 10.1355 -1.2799 26 6 12.1077 5.2391 0.1513 27 6 8.4377 4.9423 0.4460 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.7289 3.2892 0.8888 36 1 3.7282 3.2887 -0.8912 37 1 5.8993 4.6152 -0.0077 38 1 8.5080 2.4414 -1.6946 39 1 7.6111 3.9181 -2.1686 40 1 10.5308 6.6772 0.7468 41 1 11.2674 6.0542 -2.2051 42 1 11.1972 7.6788 -1.3913 43 1 13.3963 9.1807 -2.8967 44 1 12.4372 5.2010 1.1897 45 1 12.1595 4.2718 -0.3483 46 1 7.7675 5.7829 0.2661 47 1 8.6975 4.8857 1.5031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108521496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:46 Heat of formation + Delta-G solvation = -48.638256 kcal Electronic energy + Delta-G solvation = -27221.771163 eV Core-core repulsion = 23214.122978 eV Total energy + Delta-G solvation = -4007.648185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77783 -39.76894 -38.19957 -37.22159 -36.36786 -34.17688 -34.12291 -32.20973 -30.65931 -28.75262 -27.55108 -26.96704 -25.90325 -24.71841 -23.41729 -22.16455 -21.92204 -20.99231 -20.36589 -18.34196 -17.71439 -17.26227 -16.96803 -16.80967 -16.50911 -16.25508 -15.49524 -15.32984 -15.05363 -14.67353 -14.32248 -14.20065 -13.92130 -13.70998 -13.54401 -13.50225 -13.26520 -12.63384 -12.59409 -12.45272 -12.41015 -12.05428 -11.83655 -11.58928 -11.41305 -11.39527 -11.35134 -11.16449 -10.84956 -10.70145 -10.23681 -10.16653 -10.10599 -9.95129 -9.69502 -9.48824 -9.16711 -8.65119 -8.19102 -6.80405 -5.71750 -3.03593 2.25338 2.31042 2.92533 3.23748 3.42585 3.47584 3.50201 3.50945 4.15662 4.34853 4.46010 4.47783 4.52064 4.55343 4.65893 4.71866 4.80147 4.83024 4.88096 4.97765 4.99837 5.23940 5.24420 5.34319 5.36167 5.53343 5.54432 5.64446 5.65509 5.65607 5.71124 5.74794 5.85864 6.08212 6.30053 6.52473 6.57522 6.59386 6.87704 7.08946 7.30112 7.48779 7.59795 7.65240 7.86169 8.02256 8.55338 9.09479 9.75400 10.64521 11.45592 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.052644 B = 0.001818 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.747350 B =15395.892127 C =15398.892676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.045 3.955 6 C 0.516 3.484 7 O -0.512 6.512 8 N -0.720 5.720 9 C 0.137 3.863 10 H 0.111 0.889 11 C -0.167 4.167 12 C 0.515 3.485 13 O -0.506 6.506 14 N -0.606 5.606 15 C 0.098 3.902 16 C 0.151 3.849 17 N -0.605 5.605 18 C -0.219 4.219 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.111 3.889 27 C 0.100 3.900 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.404 0.596 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.028 -9.949 7.951 30.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.283 6.283 5 C -0.035 4.035 6 C 0.301 3.699 7 O -0.385 6.385 8 N -0.375 5.375 9 C 0.032 3.968 10 H 0.129 0.871 11 C -0.209 4.209 12 C 0.301 3.699 13 O -0.380 6.380 14 N -0.342 5.342 15 C -0.005 4.005 16 C 0.025 3.975 17 N -0.331 5.331 18 C -0.347 4.347 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.016 4.016 27 C -0.025 4.025 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.239 0.761 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.746 -10.703 7.406 29.744 hybrid contribution 0.468 1.174 -0.138 1.271 sum -26.278 -9.529 7.267 28.882 Atomic orbital electron populations 1.21699 0.94617 1.02399 1.01994 1.21456 0.95635 0.95347 1.03763 1.22654 0.80289 0.98414 1.00310 1.88015 1.19714 1.25083 1.95450 1.22169 0.91353 0.87164 1.02790 1.20258 0.88663 0.84533 0.76480 1.90771 1.74486 1.26381 1.46860 1.45808 1.06098 1.09030 1.76548 1.21799 0.79156 0.99048 0.96817 0.87082 1.22837 0.96982 1.03154 0.97919 1.20599 0.87772 0.80168 0.81330 1.90789 1.41967 1.65678 1.39608 1.48499 1.18513 1.42457 1.24691 1.24100 0.82655 0.91779 1.01926 1.22793 0.82494 0.99408 0.92760 1.45669 1.06945 1.33651 1.46829 1.19042 0.85128 1.10553 1.19991 0.90121 1.24795 0.97889 0.99060 0.98727 1.69840 1.30525 1.27593 1.28692 0.86028 0.83445 0.78758 0.77422 1.20441 1.21732 1.21739 1.22936 0.89981 0.93056 0.95668 1.22182 0.87520 0.96027 0.96770 0.92521 0.92491 0.91903 0.90897 0.90930 0.93090 0.93067 0.90103 0.90053 0.76123 0.87757 0.87814 0.87630 0.92315 0.91184 0.93726 0.93897 0.94293 0.90853 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.12 -0.73 6.30 -26.73 -0.17 -0.90 16 3 C 0.06 0.36 5.94 37.16 0.22 0.58 16 4 O -0.36 -3.41 9.88 -55.14 -0.54 -3.95 16 5 C 0.05 0.29 6.42 36.01 0.23 0.52 16 6 C 0.52 4.82 7.90 -10.98 -0.09 4.73 16 7 O -0.51 -7.37 16.24 -14.35 -0.23 -7.60 16 8 N -0.72 -4.97 5.18 -52.22 -0.27 -5.24 16 9 C 0.14 1.29 3.43 -66.30 -0.23 1.07 16 10 H 0.11 1.17 7.73 -51.93 -0.40 0.77 16 11 C -0.17 -2.03 6.59 -26.74 -0.18 -2.21 16 12 C 0.52 8.78 7.44 -10.87 -0.08 8.70 16 13 O -0.51 -11.41 14.64 5.56 0.08 -11.32 16 14 N -0.61 -9.22 3.15 -166.63 -0.53 -9.75 16 15 C 0.10 1.86 4.82 -70.14 -0.34 1.52 16 16 C 0.15 3.78 6.88 -2.97 -0.02 3.76 16 17 N -0.60 -16.37 3.70 -178.07 -0.66 -17.03 16 18 C -0.22 -6.42 10.70 -15.06 -0.16 -6.58 16 19 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -28.22 11.38 55.49 0.63 -27.58 16 22 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C 0.11 2.43 8.45 -2.98 -0.03 2.40 16 27 C 0.10 0.95 7.07 -3.12 -0.02 0.92 16 28 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.40 1.42 8.37 -40.82 -0.34 1.08 16 38 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.06 1.62 5.58 -51.93 -0.29 1.34 16 42 H 0.07 1.89 7.15 -51.93 -0.37 1.51 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.91 7.41 -51.93 -0.38 0.53 16 46 H 0.07 0.54 7.77 -51.93 -0.40 0.13 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -39.13 386.48 -8.95 -48.09 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.65 Total: -3.13 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -0.58 Total: 13.95 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.82 Total: -59.60 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.70 Total: -22.88 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.13 -8.95 -48.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108521496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.550 kcal (2) G-P(sol) polarization free energy of solvation -39.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds