Wall clock time and date at job start Tue Mar 31 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46851 * 2 1 4 4 O 1.42901 * 109.46807 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99607 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46876 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09001 * 110.85718 * 322.67178 * 9 8 6 11 11 C 1.54632 * 110.96962 * 86.45510 * 9 8 6 12 12 C 1.51278 * 104.19463 * 142.91861 * 11 9 8 13 13 O 1.21282 * 124.93916 * 163.71371 * 12 11 9 14 14 N 1.34412 * 110.11694 * 343.74777 * 12 11 9 15 15 C 1.46503 * 124.34978 * 179.57404 * 14 12 11 16 16 C 1.53948 * 113.74317 * 36.64839 * 15 14 12 17 17 N 1.47586 * 86.11585 * 222.04956 * 16 15 14 18 18 C 1.36940 * 134.48731 * 204.63792 * 17 16 15 19 19 H 1.08000 * 119.99688 * 180.02562 * 18 17 16 20 20 C 1.38805 * 120.00168 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00276 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99889 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47241 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47449 * 119.99881 * 22 20 18 25 25 H 1.48505 * 109.47055 * 239.99814 * 22 20 18 26 26 C 1.47576 * 91.01377 * 24.64202 * 17 16 15 27 27 C 1.46764 * 111.30359 * 359.59513 * 14 12 11 28 28 H 1.09003 * 109.46844 * 299.99813 * 1 2 3 29 29 H 1.08992 * 109.47104 * 59.99858 * 1 2 3 30 30 H 1.08998 * 109.46894 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46715 * 240.00628 * 2 1 3 32 32 H 1.08993 * 109.47591 * 119.99939 * 2 1 3 33 33 H 1.09003 * 109.47244 * 60.00432 * 3 2 1 34 34 H 1.09001 * 109.46822 * 300.00035 * 3 2 1 35 35 H 1.09004 * 109.47206 * 60.00168 * 5 4 3 36 36 H 1.08994 * 109.47548 * 299.99825 * 5 4 3 37 37 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 38 38 H 1.09002 * 110.48765 * 261.60135 * 11 9 8 39 39 H 1.08999 * 110.48131 * 24.23880 * 11 9 8 40 40 H 1.09004 * 112.94818 * 168.38828 * 15 14 12 41 41 H 1.09001 * 113.76553 * 336.35113 * 16 15 14 42 42 H 1.09002 * 113.76390 * 107.74774 * 16 15 14 43 43 H 0.97002 * 120.00030 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.76745 * 221.05577 * 26 17 16 45 45 H 1.09003 * 113.77329 * 89.66475 * 26 17 16 46 46 H 1.08997 * 110.24337 * 258.01476 * 27 14 12 47 47 H 1.08996 * 110.24586 * 136.01735 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5525 2.6291 -0.0012 7 8 6.0741 1.5342 -0.0012 8 7 6.3164 3.7394 -0.0074 9 6 7.7768 3.6238 -0.0134 10 1 8.1024 2.7874 0.6050 11 6 8.3151 3.4875 -1.4566 12 6 9.6067 4.2751 -1.4467 13 8 10.4759 4.1945 -2.2887 14 7 9.6510 5.0767 -0.3687 15 6 10.7673 5.9696 -0.0479 16 6 11.4183 6.6169 -1.2838 17 7 12.7091 6.3418 -0.6234 18 6 13.9618 6.8898 -0.6993 19 1 14.7622 6.4937 -0.0919 20 6 14.2029 7.9544 -1.5567 21 7 13.2277 8.4369 -2.2973 22 14 15.9119 8.7014 -1.6607 23 1 16.8233 7.9831 -0.7341 24 1 16.4215 8.5800 -3.0501 25 1 15.8492 10.1355 -1.2799 26 6 12.1077 5.2391 0.1513 27 6 8.4377 4.9423 0.4460 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.7289 3.2892 0.8888 36 1 3.7282 3.2887 -0.8912 37 1 5.8993 4.6152 -0.0077 38 1 8.5080 2.4414 -1.6946 39 1 7.6111 3.9181 -2.1686 40 1 10.5308 6.6772 0.7468 41 1 11.2674 6.0542 -2.2051 42 1 11.1972 7.6788 -1.3913 43 1 13.3963 9.1807 -2.8967 44 1 12.4372 5.2010 1.1897 45 1 12.1595 4.2718 -0.3483 46 1 7.7675 5.7829 0.2661 47 1 8.6975 4.8857 1.5031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108521496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:45 Heat of formation + Delta-G solvation = -78.399859 kcal Electronic energy + Delta-G solvation = -27223.061723 eV Core-core repulsion = 23214.122978 eV Total energy + Delta-G solvation = -4008.938745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.91840 -40.68989 -39.06956 -38.64904 -37.57823 -35.27027 -34.54578 -34.16942 -31.89257 -29.58777 -29.10689 -28.02587 -26.61696 -26.39156 -25.21322 -22.94796 -22.44045 -22.13758 -21.64310 -19.79390 -18.80981 -18.36217 -17.98833 -17.66235 -17.47400 -17.33558 -16.91825 -16.31898 -16.06046 -15.99898 -15.62604 -15.32294 -15.04783 -14.89315 -14.63356 -14.41759 -14.26796 -14.03304 -13.62933 -13.43404 -13.27623 -13.04067 -13.01046 -12.85503 -12.83660 -12.73920 -12.59220 -12.25520 -12.02654 -11.88297 -11.79195 -11.75203 -11.52085 -11.13764 -10.90021 -10.66318 -10.60646 -10.13159 -9.58213 -8.94416 -7.93353 -5.27944 1.42915 1.45608 1.53814 1.55899 1.60594 1.66130 2.04885 2.48009 2.97302 3.25515 3.32943 3.47051 3.49011 3.74665 3.78245 3.95208 4.02400 4.07852 4.16097 4.24934 4.32561 4.37941 4.46169 4.52286 4.57094 4.61769 4.65213 4.69054 4.75904 4.82320 4.87677 4.88548 4.91684 5.19857 5.20758 5.22752 5.26583 5.37304 5.39406 5.47811 5.84530 5.89392 6.14862 6.23946 6.56602 6.88333 7.20883 7.24962 7.56738 8.52269 9.24111 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.052644 B = 0.001818 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.747350 B =15395.892127 C =15398.892676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.057 3.943 4 O -0.404 6.404 5 C 0.045 3.955 6 C 0.513 3.487 7 O -0.570 6.570 8 N -0.698 5.698 9 C 0.151 3.849 10 H 0.103 0.897 11 C -0.155 4.155 12 C 0.504 3.496 13 O -0.573 6.573 14 N -0.605 5.605 15 C 0.137 3.863 16 C 0.146 3.854 17 N -0.635 5.635 18 C -0.238 4.238 19 H 0.085 0.915 20 C -0.068 4.068 21 N -0.954 5.954 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.296 1.296 25 H -0.284 1.284 26 C 0.110 3.890 27 C 0.101 3.899 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.425 0.575 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.141 0.859 41 H 0.024 0.976 42 H 0.043 0.957 43 H 0.249 0.751 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.110 0.890 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.355 -8.961 10.204 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C -0.018 4.018 4 O -0.324 6.324 5 C -0.034 4.034 6 C 0.300 3.700 7 O -0.448 6.448 8 N -0.354 5.354 9 C 0.045 3.955 10 H 0.121 0.879 11 C -0.197 4.197 12 C 0.292 3.708 13 O -0.452 6.452 14 N -0.338 5.338 15 C 0.034 3.966 16 C 0.020 3.980 17 N -0.361 5.361 18 C -0.366 4.366 19 H 0.103 0.897 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.812 3.188 23 H -0.188 1.188 24 H -0.223 1.223 25 H -0.211 1.211 26 C -0.016 4.016 27 C -0.021 4.021 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.265 0.735 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.159 0.841 41 H 0.042 0.958 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.038 0.962 46 H 0.128 0.872 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -29.156 -9.696 9.725 32.228 hybrid contribution 1.137 0.794 -0.856 1.629 sum -28.019 -8.902 8.869 30.708 Atomic orbital electron populations 1.21669 0.93085 1.02741 1.02740 1.21491 0.96964 0.95633 1.02479 1.22796 0.78877 0.98366 1.01812 1.87968 1.21473 1.27110 1.95825 1.22361 0.88666 0.86629 1.05725 1.20932 0.90158 0.83890 0.74974 1.90757 1.75682 1.28681 1.49688 1.45562 1.04731 1.09794 1.75327 1.21523 0.80656 0.98957 0.94379 0.87912 1.22756 0.94697 1.01633 1.00565 1.21456 0.88459 0.80197 0.80689 1.90755 1.44668 1.67713 1.42108 1.48448 1.19365 1.40943 1.25043 1.23410 0.82992 0.91325 0.98917 1.22599 0.83505 0.97741 0.94168 1.46104 1.06998 1.35225 1.47792 1.19482 0.86551 1.10633 1.19917 0.89685 1.25716 1.01938 0.99800 0.98632 1.70046 1.32624 1.28076 1.29503 0.84931 0.78824 0.77975 0.77081 1.18760 1.22340 1.21075 1.23032 0.91508 0.91135 0.95961 1.22538 0.85378 0.97047 0.97128 0.91633 0.91808 0.91845 0.92356 0.92120 0.91309 0.91638 0.86680 0.87191 0.73536 0.88776 0.86091 0.84126 0.95796 0.93824 0.94217 0.91206 0.96249 0.87208 0.86797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 71.98 0.71 -0.22 16 2 C -0.13 -1.41 6.30 30.60 0.19 -1.21 16 3 C 0.06 0.56 5.94 71.98 0.43 0.99 16 4 O -0.40 -6.87 9.88 -129.94 -1.28 -8.15 16 5 C 0.05 0.42 6.42 71.24 0.46 0.88 16 6 C 0.51 8.31 7.90 87.66 0.69 9.00 16 7 O -0.57 -16.07 16.24 16.00 0.26 -15.81 16 8 N -0.70 -7.00 5.18 -437.53 -2.27 -9.27 16 9 C 0.15 2.42 3.43 46.05 0.16 2.58 16 10 H 0.10 1.94 7.73 -2.39 -0.02 1.92 16 11 C -0.16 -3.61 6.59 30.59 0.20 -3.41 16 12 C 0.50 17.27 7.44 87.90 0.65 17.93 16 13 O -0.57 -27.31 14.64 -3.04 -0.04 -27.36 16 14 N -0.60 -17.33 3.15 -799.71 -2.52 -19.85 16 15 C 0.14 5.03 4.82 46.75 0.23 5.25 16 16 C 0.15 7.54 6.88 86.48 0.60 8.13 16 17 N -0.63 -35.03 3.70 -717.30 -2.65 -37.69 16 18 C -0.24 -14.11 10.70 84.03 0.90 -13.21 16 19 H 0.09 4.81 7.83 -2.91 -0.02 4.78 16 20 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 21 N -0.95 -60.38 11.38 21.65 0.25 -60.13 16 22 Si 0.98 47.49 29.55 68.60 2.03 49.52 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 C 0.11 4.79 8.45 86.48 0.73 5.52 16 27 C 0.10 1.49 7.07 86.83 0.61 2.10 16 28 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 35 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 36 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.43 0.76 8.37 -92.71 -0.78 -0.02 16 38 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.12 2.40 8.08 -2.39 -0.02 2.38 16 40 H 0.14 4.26 8.14 -2.38 -0.02 4.24 16 41 H 0.02 1.42 5.58 -2.39 -0.01 1.41 16 42 H 0.04 2.44 7.15 -2.39 -0.02 2.42 16 43 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 45 H 0.02 0.94 7.41 -2.39 -0.02 0.92 16 46 H 0.11 0.95 7.77 -2.39 -0.02 0.93 16 47 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -92.97 386.48 0.99 -91.98 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.19 Total: 6.03 kcal Atomic # 6 Polarization: 23.70 SS G_CDS: 7.03 Total: 30.72 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -7.20 Total: -126.94 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -1.07 Total: -51.32 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -92.97 0.99 -91.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108521496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.580 kcal (2) G-P(sol) polarization free energy of solvation -92.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds