Wall clock time and date at job start Tue Mar 31 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00068 * 2 1 4 4 H 1.09009 * 109.46859 * 330.00122 * 3 2 1 5 5 C 1.52994 * 109.47178 * 90.00034 * 3 2 1 6 6 C 1.52996 * 109.47328 * 210.00470 * 3 2 1 7 7 C 1.50702 * 109.47159 * 64.99682 * 6 3 2 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 3 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09001 * 110.85718 * 322.67178 * 10 9 7 12 12 C 1.54632 * 110.96962 * 86.45510 * 10 9 7 13 13 C 1.51278 * 104.19463 * 142.91861 * 12 10 9 14 14 O 1.21282 * 124.93916 * 163.71371 * 13 12 10 15 15 N 1.34412 * 110.11694 * 343.74777 * 13 12 10 16 16 C 1.46503 * 124.34978 * 179.57404 * 15 13 12 17 17 C 1.53948 * 113.74317 * 36.64839 * 16 15 13 18 18 N 1.47586 * 86.11585 * 222.04956 * 17 16 15 19 19 C 1.36940 * 134.48731 * 204.63792 * 18 17 16 20 20 H 1.08000 * 119.99688 * 180.02562 * 19 18 17 21 21 C 1.38805 * 120.00168 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00276 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99889 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47392 * 59.99522 * 23 21 19 25 25 H 1.48501 * 109.47516 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46907 * 299.99479 * 23 21 19 27 27 C 1.47576 * 91.01377 * 24.64202 * 18 17 16 28 28 C 1.46764 * 111.30359 * 359.59513 * 15 13 12 29 29 H 1.08998 * 109.47203 * 299.99678 * 1 2 3 30 30 H 1.09001 * 109.47405 * 59.99737 * 1 2 3 31 31 H 1.08999 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47295 * 300.00420 * 5 3 2 33 33 H 1.09009 * 109.47154 * 60.00268 * 5 3 2 34 34 H 1.09003 * 109.47483 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.47066 * 304.99885 * 6 3 2 36 36 H 1.08994 * 109.47405 * 184.99715 * 6 3 2 37 37 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 38 38 H 1.09002 * 110.48765 * 261.60135 * 12 10 9 39 39 H 1.09000 * 110.48109 * 24.11036 * 12 10 9 40 40 H 1.09004 * 112.94818 * 168.38828 * 16 15 13 41 41 H 1.09001 * 113.76553 * 336.35113 * 17 16 15 42 42 H 1.09002 * 113.76390 * 107.74774 * 17 16 15 43 43 H 0.97002 * 120.00030 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.76745 * 221.05577 * 27 18 17 45 45 H 1.09003 * 113.77329 * 89.66475 * 27 18 17 46 46 H 1.08997 * 110.24337 * 258.01476 * 28 15 13 47 47 H 1.08996 * 110.24586 * 136.01735 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3588 1.2633 -0.7213 7 6 3.1414 0.9237 -2.1734 8 8 2.0184 0.7344 -2.5904 9 7 4.1945 0.8362 -3.0099 10 6 3.9827 0.5119 -4.4228 11 1 3.1816 -0.2183 -4.5375 12 6 3.6903 1.7880 -5.2457 13 6 4.3891 1.5466 -6.5655 14 8 4.1808 2.1685 -7.5857 15 7 5.2738 0.5422 -6.4432 16 6 6.1150 0.0441 -7.5344 17 6 6.6116 1.1467 -8.4871 18 7 6.3086 0.2006 -9.5785 19 6 6.7644 0.0350 -10.8592 20 1 6.3688 -0.7594 -11.4746 21 6 7.7349 0.8881 -11.3662 22 7 8.2167 1.8565 -10.6163 23 14 8.3562 0.6626 -13.1133 24 1 7.2236 0.8026 -14.0634 25 1 9.3828 1.6935 -13.4107 26 1 8.9567 -0.6883 -13.2546 27 6 5.3170 -0.4951 -8.7355 28 6 5.2887 0.0082 -5.0763 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.2569 1.8014 1.9563 33 1 2.8830 1.0774 1.9563 34 1 2.6614 2.7670 1.4425 35 1 3.9931 0.5052 -0.2619 36 1 3.8426 2.2370 -0.6445 37 1 5.0927 0.9878 -2.6766 38 1 2.6175 1.9062 -5.3980 39 1 4.1030 2.6656 -4.7481 40 1 6.9009 -0.6292 -7.1919 41 1 5.9847 2.0383 -8.4918 42 1 7.6730 1.3719 -8.3829 43 1 8.8947 2.4529 -10.9708 44 1 5.3447 -1.5806 -8.8297 45 1 4.3097 -0.0857 -8.8132 46 1 6.1535 0.3880 -4.5324 47 1 5.3042 -1.0815 -5.0972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108521725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:12 Heat of formation + Delta-G solvation = -48.066670 kcal Electronic energy + Delta-G solvation = -27823.468853 eV Core-core repulsion = 23815.845453 eV Total energy + Delta-G solvation = -4007.623399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75562 -39.80932 -38.21685 -37.20781 -36.33780 -34.10307 -33.22017 -32.14502 -30.45750 -28.50403 -27.52664 -27.00965 -26.62532 -24.70951 -23.44130 -22.58393 -21.45238 -20.77318 -20.29879 -18.31924 -17.55253 -17.18619 -16.92763 -16.67447 -16.23978 -15.79039 -15.32221 -15.18883 -15.07136 -14.63459 -14.38477 -13.92721 -13.78013 -13.60412 -13.50064 -13.37168 -13.20170 -12.95027 -12.49761 -12.42022 -12.35146 -12.00322 -11.79681 -11.74096 -11.56934 -11.37967 -11.14127 -11.09449 -10.82210 -10.70528 -10.21971 -10.08794 -9.99178 -9.89035 -9.62223 -9.47112 -9.12380 -8.63521 -8.17173 -6.79761 -5.70647 -3.02617 2.39962 2.72057 2.94305 3.32080 3.43892 3.46860 3.48125 3.49581 4.19873 4.34709 4.39698 4.51350 4.52909 4.74935 4.82638 4.88447 4.95624 5.03112 5.04972 5.13818 5.25207 5.25929 5.27376 5.36356 5.39811 5.50305 5.52578 5.55522 5.67227 5.71260 5.72472 5.73740 5.87225 6.18068 6.31211 6.53604 6.60059 6.88951 6.91718 7.18541 7.30697 7.50692 7.60299 7.66418 7.97003 8.03141 8.57033 9.10254 9.76205 10.65573 11.46544 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.042639 B = 0.002064 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.519648 B =13564.290954 C =13680.658592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.099 3.901 4 H 0.069 0.931 5 C -0.176 4.176 6 C -0.141 4.141 7 C 0.518 3.482 8 O -0.527 6.527 9 N -0.724 5.724 10 C 0.136 3.864 11 H 0.109 0.891 12 C -0.166 4.166 13 C 0.515 3.485 14 O -0.508 6.508 15 N -0.606 5.606 16 C 0.098 3.902 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.111 3.889 28 C 0.099 3.901 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.403 0.597 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.254 0.746 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.269 -1.917 27.936 29.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.087 0.913 5 C -0.233 4.233 6 C -0.181 4.181 7 C 0.305 3.695 8 O -0.402 6.402 9 N -0.377 5.377 10 C 0.030 3.970 11 H 0.127 0.873 12 C -0.208 4.208 13 C 0.301 3.699 14 O -0.382 6.382 15 N -0.341 5.341 16 C -0.005 4.005 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C -0.016 4.016 28 C -0.026 4.026 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.238 0.762 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.831 -1.840 26.719 28.529 hybrid contribution 0.624 0.240 -0.725 0.986 sum -9.207 -1.600 25.994 27.622 Atomic orbital electron populations 1.22702 0.80901 1.02524 0.99770 1.87879 1.19896 1.26900 1.94960 1.21782 0.93520 0.85967 0.94675 0.91310 1.22306 1.02678 1.01686 0.96645 1.21864 0.99319 1.04616 0.92280 1.20562 0.84690 0.76400 0.87888 1.90720 1.23235 1.48414 1.77856 1.45964 1.10114 1.72856 1.08731 1.21768 0.98316 0.96838 0.80031 0.87282 1.22818 1.03401 0.99399 0.95161 1.20611 0.79925 0.79790 0.89575 1.90785 1.64767 1.50051 1.32594 1.48494 1.40485 1.35295 1.09840 1.24091 0.92791 1.00067 0.83511 1.22789 1.00259 0.92225 0.82147 1.45659 1.42359 1.33667 1.11434 1.18940 1.16540 1.12007 0.87313 0.90239 1.24802 0.99630 0.97603 0.98473 1.69820 1.31609 1.19481 1.35772 0.86171 0.78252 0.77087 0.84063 1.21175 1.21567 1.21095 1.22933 0.93953 0.96130 0.88605 1.22192 0.96569 1.00056 0.83745 0.94664 0.93471 0.89982 0.92148 0.91623 0.91426 0.87822 0.87479 0.76235 0.87946 0.87917 0.87653 0.92326 0.91195 0.93622 0.93914 0.94320 0.90909 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.82 101.05 1.09 1.39 16 2 O -0.38 -3.64 9.58 -49.63 -0.48 -4.12 16 3 C 0.10 0.71 2.27 -26.74 -0.06 0.65 16 4 H 0.07 0.55 7.60 -51.92 -0.39 0.15 16 5 C -0.18 -0.87 9.53 37.15 0.35 -0.52 16 6 C -0.14 -0.80 5.41 -27.88 -0.15 -0.95 16 7 C 0.52 4.61 7.71 -10.98 -0.08 4.53 16 8 O -0.53 -6.86 15.16 -8.85 -0.13 -6.99 16 9 N -0.72 -5.20 5.18 -52.22 -0.27 -5.47 16 10 C 0.14 1.32 3.43 -66.30 -0.23 1.09 16 11 H 0.11 1.19 7.73 -51.93 -0.40 0.79 16 12 C -0.17 -2.03 6.59 -26.74 -0.18 -2.20 16 13 C 0.51 8.86 7.44 -10.87 -0.08 8.78 16 14 O -0.51 -11.49 14.64 5.56 0.08 -11.41 16 15 N -0.61 -9.39 3.15 -166.63 -0.53 -9.91 16 16 C 0.10 1.88 4.82 -70.14 -0.34 1.54 16 17 C 0.15 3.82 6.88 -2.97 -0.02 3.80 16 18 N -0.60 -16.51 3.70 -178.07 -0.66 -17.17 16 19 C -0.22 -6.47 10.70 -15.06 -0.16 -6.64 16 20 H 0.08 2.24 7.83 -52.49 -0.41 1.82 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -28.34 11.38 55.49 0.63 -27.71 16 23 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 C 0.11 2.45 8.45 -2.98 -0.03 2.43 16 28 C 0.10 0.99 7.07 -3.12 -0.02 0.96 16 29 H 0.03 0.21 7.87 -51.93 -0.41 -0.19 16 30 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 33 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.40 1.68 8.37 -40.82 -0.34 1.34 16 38 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 41 H 0.06 1.63 5.58 -51.93 -0.29 1.34 16 42 H 0.07 1.90 7.15 -51.93 -0.37 1.53 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.91 7.41 -51.93 -0.38 0.53 16 46 H 0.07 0.58 7.77 -51.93 -0.40 0.17 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -38.37 383.21 -8.19 -46.56 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.59 Total: -1.91 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 0.00 Total: 14.52 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.82 Total: -60.25 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.53 Total: -22.52 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.37 -8.19 -46.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108521725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.508 kcal (2) G-P(sol) polarization free energy of solvation -38.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds