Wall clock time and date at job start Tue Mar 31 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.74987 * 2 1 4 4 C 1.54380 * 110.84495 * 123.46941 * 2 1 3 5 5 O 1.43233 * 107.59012 * 139.75371 * 4 2 1 6 6 C 1.43658 * 109.96937 * 1.70979 * 5 4 2 7 7 H 1.08997 * 110.30935 * 94.59083 * 6 5 4 8 8 C 1.50701 * 110.30769 * 216.66124 * 6 5 4 9 9 O 1.21286 * 120.00281 * 3.54293 * 8 6 5 10 10 N 1.34777 * 119.99830 * 183.54544 * 8 6 5 11 11 C 1.47072 * 120.88098 * 179.97438 * 10 8 6 12 12 C 1.53242 * 108.52192 * 231.16489 * 11 10 8 13 13 N 1.46906 * 109.33638 * 306.17002 * 12 11 10 14 14 C 1.46904 * 110.99831 * 187.25693 * 13 12 11 15 15 C 1.50697 * 109.47083 * 169.99953 * 14 13 12 16 16 O 1.21290 * 120.00052 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99794 * 179.97438 * 15 14 13 18 18 C 1.37097 * 119.99626 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00504 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99692 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00171 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46843 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47011 * 119.99545 * 22 20 18 25 25 H 1.48492 * 109.47073 * 239.99858 * 22 20 18 26 26 C 1.46895 * 111.26834 * 63.10342 * 13 12 11 27 27 C 1.47083 * 120.88168 * 359.97438 * 10 8 6 28 28 C 1.54946 * 105.13174 * 335.57392 * 6 5 4 29 29 H 1.08993 * 109.47487 * 297.98778 * 1 2 3 30 30 H 1.09004 * 109.46678 * 57.98061 * 1 2 3 31 31 H 1.08997 * 109.46896 * 177.98509 * 1 2 3 32 32 H 1.08999 * 109.83045 * 20.23329 * 4 2 1 33 33 H 1.09006 * 109.82744 * 259.26495 * 4 2 1 34 34 H 1.09000 * 109.62875 * 111.45391 * 11 10 8 35 35 H 1.09006 * 109.78964 * 350.96817 * 11 10 8 36 36 H 1.08997 * 109.49523 * 186.21342 * 12 11 10 37 37 H 1.08992 * 109.51625 * 66.14231 * 12 11 10 38 38 H 1.09006 * 109.46660 * 289.99609 * 14 13 12 39 39 H 1.09000 * 109.47635 * 49.99734 * 14 13 12 40 40 H 0.96995 * 119.99937 * 359.97438 * 17 15 14 41 41 H 0.97001 * 119.99969 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.49089 * 56.85952 * 26 13 12 43 43 H 1.09007 * 109.49281 * 176.93091 * 26 13 12 44 44 H 1.08995 * 109.62607 * 248.54859 * 27 10 8 45 45 H 1.09003 * 109.62747 * 8.92708 * 27 10 8 46 46 H 1.09005 * 111.12336 * 154.36626 * 28 6 5 47 47 H 1.09008 * 111.12378 * 278.52262 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9162 1.0193 0.0000 4 6 2.0794 -0.7957 1.2035 5 8 3.2074 -1.5501 0.7451 6 6 3.4512 -1.2734 -0.6433 7 1 4.1976 -0.4859 -0.7467 8 6 3.9076 -2.5220 -1.3531 9 8 3.9573 -3.5759 -0.7549 10 7 4.2605 -2.4675 -2.6527 11 6 4.7093 -3.6738 -3.3643 12 6 6.0385 -3.3623 -4.0603 13 7 5.8791 -2.1683 -4.9012 14 6 7.0780 -1.9355 -5.7176 15 6 6.7916 -0.8623 -6.7360 16 8 5.6967 -0.3421 -6.7773 17 7 7.7525 -0.4798 -7.6002 18 6 7.4921 0.4970 -8.5263 19 1 6.5172 0.9602 -8.5631 20 6 8.4826 0.8910 -9.4176 21 7 9.6690 0.3278 -9.3726 22 14 8.1276 2.2214 -10.6801 23 1 6.7278 2.6916 -10.5233 24 1 9.0579 3.3605 -10.4737 25 1 8.3153 1.6703 -12.0461 26 6 5.5556 -0.9859 -4.0918 27 6 4.2071 -1.2000 -3.3970 28 6 2.0872 -0.8021 -1.2074 29 1 -0.3634 0.4822 0.9074 30 1 -0.3633 0.5449 -0.8714 31 1 -0.3633 -1.0270 -0.0361 32 1 1.3119 -1.4709 1.5818 33 1 2.3895 -0.1083 1.9907 34 1 3.9647 -3.9588 -4.1076 35 1 4.8497 -4.4898 -2.6552 36 1 6.3307 -4.2086 -4.6820 37 1 6.8080 -3.1790 -3.3105 38 1 7.8989 -1.6170 -5.0750 39 1 7.3539 -2.8576 -6.2293 40 1 8.6285 -0.8950 -7.5664 41 1 10.3606 0.6031 -9.9946 42 1 6.3315 -0.8355 -3.3412 43 1 5.4976 -0.1087 -4.7363 44 1 3.4142 -1.2468 -4.1433 45 1 4.0128 -0.3784 -2.7074 46 1 2.2228 -0.1593 -2.0772 47 1 1.4458 -1.6510 -1.4448 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113129019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:54 Heat of formation + Delta-G solvation = -123.604588 kcal Electronic energy + Delta-G solvation = -28300.643898 eV Core-core repulsion = 24289.744929 eV Total energy + Delta-G solvation = -4010.898969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.78002 -40.54519 -39.76949 -38.51734 -36.08121 -35.50543 -34.54771 -33.24452 -32.67824 -31.21439 -29.96548 -27.50073 -27.20958 -25.74651 -24.89817 -24.27868 -22.14941 -21.59620 -21.04046 -20.00526 -19.81269 -18.78937 -17.80100 -17.62912 -17.13282 -16.64691 -16.51376 -16.43644 -16.22312 -16.01669 -15.46017 -15.40241 -15.34459 -15.26814 -14.77941 -14.46516 -14.15428 -13.92436 -13.85409 -13.51779 -13.37561 -13.22040 -13.02741 -12.84477 -12.77525 -12.38411 -12.33909 -12.27053 -12.18400 -12.13413 -12.07402 -11.97455 -11.68091 -11.42598 -11.01465 -10.46310 -10.32962 -9.98073 -9.81739 -9.23362 -8.43943 -5.91970 1.38532 1.40855 1.44244 1.57775 1.67616 2.08319 2.29775 2.69960 2.82786 3.19895 3.23603 3.37760 3.45630 3.75141 3.85764 3.91414 3.97960 4.01215 4.14391 4.18766 4.22734 4.27044 4.41475 4.46311 4.50707 4.52288 4.60200 4.65849 4.70882 4.72363 4.77401 4.83113 4.89229 4.92076 5.01455 5.03977 5.19180 5.34730 5.37242 5.44464 5.79047 5.87473 6.05248 6.12452 6.28731 6.63231 7.00848 7.16114 7.60115 8.14708 8.73697 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.002481 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.864632 B =11284.227827 C =12287.711764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 H 0.108 0.892 4 C 0.044 3.956 5 O -0.389 6.389 6 C 0.063 3.937 7 H 0.115 0.885 8 C 0.512 3.488 9 O -0.574 6.574 10 N -0.605 5.605 11 C 0.119 3.881 12 C 0.047 3.953 13 N -0.529 5.529 14 C 0.057 3.943 15 C 0.445 3.555 16 O -0.608 6.608 17 N -0.576 5.576 18 C -0.326 4.326 19 H 0.082 0.918 20 C -0.015 4.015 21 N -0.923 5.923 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.039 3.961 27 C 0.119 3.881 28 C -0.140 4.140 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.112 0.888 40 H 0.395 0.605 41 H 0.276 0.724 42 H 0.034 0.966 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 -1.378 16.800 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 H 0.126 0.874 4 C -0.032 4.032 5 O -0.308 6.308 6 C 0.003 3.997 7 H 0.132 0.868 8 C 0.301 3.699 9 O -0.453 6.453 10 N -0.339 5.339 11 C -0.004 4.004 12 C -0.082 4.082 13 N -0.254 5.254 14 C -0.073 4.073 15 C 0.232 3.768 16 O -0.494 6.494 17 N -0.214 5.214 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.215 4.215 21 N -0.564 5.564 22 Si 0.815 3.185 23 H -0.195 1.195 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.090 4.090 27 C -0.003 4.003 28 C -0.177 4.177 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.228 0.772 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.168 -1.785 16.803 21.423 hybrid contribution 1.319 0.434 -0.377 1.439 sum -11.849 -1.351 16.426 20.299 Atomic orbital electron populations 1.21723 0.92353 1.02313 1.03385 1.22740 0.98122 1.00352 0.92374 0.87422 1.23536 0.87639 0.94596 0.97441 1.88490 1.50422 1.68709 1.23182 1.22939 1.00200 0.93767 0.82817 0.86787 1.20972 0.76713 0.90713 0.81540 1.90667 1.55113 1.33094 1.66399 1.48226 1.65125 1.11092 1.09441 1.21711 0.95796 0.87327 0.95523 1.22534 0.96417 0.93707 0.95496 1.61491 1.35474 1.04286 1.24176 1.21730 0.91982 0.98802 0.94835 1.20644 0.84927 0.86544 0.84673 1.90450 1.24855 1.59788 1.74337 1.41962 1.13630 1.35407 1.30365 1.19690 0.99422 1.15221 1.11266 0.89988 1.26026 0.94612 1.00693 1.00147 1.69681 1.03909 1.43768 1.39062 0.84889 0.78342 0.77643 0.77603 1.19501 1.19848 1.19946 1.22568 0.96558 0.94522 0.95348 1.22025 0.97532 0.85044 0.95677 1.23454 0.93008 1.01115 1.00158 0.90902 0.91086 0.92921 0.91089 0.89518 0.90045 0.89097 0.87558 0.94462 0.91762 0.87034 0.77154 0.91456 0.94817 0.89426 0.89910 0.86934 0.86655 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.15 71.98 0.66 -0.62 16 2 C -0.12 -1.34 3.59 -9.53 -0.03 -1.37 16 3 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 4 C 0.04 0.70 7.40 72.45 0.54 1.23 16 5 O -0.39 -9.67 10.61 -130.51 -1.38 -11.05 16 6 C 0.06 1.31 2.90 30.51 0.09 1.40 16 7 H 0.11 1.92 7.40 -2.39 -0.02 1.90 16 8 C 0.51 13.83 7.11 87.66 0.62 14.45 16 9 O -0.57 -20.36 16.01 15.43 0.25 -20.12 16 10 N -0.60 -14.54 3.01 -818.02 -2.46 -17.00 16 11 C 0.12 2.81 6.59 86.35 0.57 3.38 16 12 C 0.05 1.10 5.62 86.38 0.49 1.58 16 13 N -0.53 -15.65 4.37 -899.90 -3.93 -19.58 16 14 C 0.06 1.86 5.45 85.56 0.47 2.32 16 15 C 0.44 19.77 7.44 87.66 0.65 20.42 16 16 O -0.61 -30.78 13.91 -3.06 -0.04 -30.83 16 17 N -0.58 -28.28 5.29 -306.98 -1.62 -29.91 16 18 C -0.33 -17.81 9.68 84.04 0.81 -17.00 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.02 -0.80 5.50 84.93 0.47 -0.33 16 21 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 22 Si 0.99 41.80 29.55 68.60 2.03 43.82 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 C 0.04 1.08 5.25 86.37 0.45 1.54 16 27 C 0.12 2.62 5.74 86.33 0.50 3.11 16 28 C -0.14 -2.04 5.31 32.05 0.17 -1.87 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.05 0.56 8.13 -2.39 -0.02 0.54 16 32 H 0.07 1.11 7.81 -2.39 -0.02 1.09 16 33 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 2.24 7.07 -2.38 -0.02 2.23 16 36 H 0.11 2.11 7.99 -2.39 -0.02 2.09 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 1.89 8.12 -2.38 -0.02 1.88 16 39 H 0.11 3.16 7.97 -2.39 -0.02 3.14 16 40 H 0.39 18.60 7.90 -92.71 -0.73 17.86 16 41 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 42 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 3.04 5.76 -2.38 -0.01 3.03 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.11 1.79 4.74 -2.39 -0.01 1.78 16 46 H 0.12 1.24 6.64 -2.38 -0.02 1.22 16 47 H 0.07 1.28 7.94 -2.38 -0.02 1.26 16 Total: -1.00 -72.26 371.94 -0.19 -72.45 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.25 Total: 32.59 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: 6.45 Total: 28.24 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -7.74 Total: -115.11 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: -1.18 Total: -61.99 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -72.26 -0.19 -72.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113129019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.158 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds