Wall clock time and date at job start Tue Mar 31 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.45783 * 2 1 4 4 C 1.54508 * 110.51170 * 237.39668 * 2 1 3 5 5 C 1.54487 * 104.06159 * 241.21802 * 4 2 1 6 6 O 1.44426 * 104.80045 * 23.97848 * 5 4 2 7 7 C 1.44422 * 105.27817 * 319.48836 * 6 5 4 8 8 H 1.09003 * 110.37061 * 281.68202 * 7 6 5 9 9 C 1.50694 * 110.37493 * 159.34497 * 7 6 5 10 10 O 1.21288 * 119.99875 * 359.61595 * 9 7 6 11 11 N 1.34779 * 120.00200 * 179.61659 * 9 7 6 12 12 C 1.47077 * 120.87949 * 359.72496 * 11 9 7 13 13 C 1.53695 * 108.27615 * 128.75191 * 12 11 9 14 14 N 1.46897 * 109.25890 * 54.08285 * 13 12 11 15 15 C 1.46894 * 111.00460 * 172.60700 * 14 13 12 16 16 C 1.50704 * 109.47182 * 294.30071 * 15 14 13 17 17 O 1.21295 * 119.99576 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00020 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99741 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00331 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00006 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99830 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99694 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46887 * 90.00393 * 23 21 19 25 25 H 1.48503 * 109.46655 * 210.00163 * 23 21 19 26 26 H 1.48491 * 109.47091 * 330.00320 * 23 21 19 27 27 C 1.46908 * 111.26834 * 296.75433 * 14 13 12 28 28 C 1.47079 * 120.87877 * 179.97438 * 11 9 7 29 29 H 1.09002 * 109.46898 * 179.29423 * 1 2 3 30 30 H 1.08996 * 109.46975 * 299.30047 * 1 2 3 31 31 H 1.08997 * 109.46767 * 59.29997 * 1 2 3 32 32 H 1.08996 * 110.51460 * 359.86069 * 4 2 1 33 33 H 1.08997 * 110.51340 * 122.43915 * 4 2 1 34 34 H 1.09000 * 110.37190 * 142.81038 * 5 4 2 35 35 H 1.08994 * 110.37314 * 265.03908 * 5 4 2 36 36 H 1.09000 * 109.62689 * 248.52202 * 12 11 9 37 37 H 1.09003 * 109.63044 * 9.09920 * 12 11 9 38 38 H 1.08998 * 109.64806 * 294.07610 * 13 12 11 39 39 H 1.09003 * 109.42224 * 173.94893 * 13 12 11 40 40 H 1.09006 * 109.47369 * 54.30109 * 15 14 13 41 41 H 1.09003 * 109.47683 * 174.29977 * 15 14 13 42 42 H 0.97000 * 120.00286 * 0.02562 * 18 16 15 43 43 H 0.96999 * 119.99412 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.49384 * 303.14932 * 27 14 13 45 45 H 1.08993 * 109.51229 * 183.07644 * 27 14 13 46 46 H 1.08993 * 109.63205 * 350.90370 * 28 11 9 47 47 H 1.09007 * 109.62216 * 111.48495 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0714 -0.7797 -1.2191 5 6 2.8787 -1.9394 -0.5946 6 8 2.3119 -2.1166 0.7219 7 6 2.0742 -0.7808 1.2168 8 1 3.0049 -0.3352 1.5683 9 6 1.0522 -0.8055 2.3240 10 8 0.5556 -1.8574 2.6674 11 7 0.6900 0.3412 2.9326 12 6 1.2842 1.6267 2.5357 13 6 0.1443 2.6219 2.2663 14 7 -0.7350 2.6812 3.4416 15 6 -1.7360 3.7465 3.2970 16 6 -1.0461 5.0863 3.2884 17 8 0.1609 5.1475 3.3919 18 7 -1.7701 6.2163 3.1645 19 6 -1.1423 7.4351 3.1561 20 1 -0.0676 7.4897 3.2483 21 6 -1.8887 8.6002 3.0290 22 7 -1.2870 9.7685 3.0215 23 14 -3.7475 8.5058 2.8688 24 1 -4.3637 8.5535 4.2191 25 1 -4.2337 9.6537 2.0619 26 1 -4.1226 7.2351 2.1982 27 6 -1.3786 1.3845 3.6915 28 6 -0.3060 0.3394 4.0148 29 1 -0.3633 -1.0276 -0.0127 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 0.5247 -0.8836 32 1 1.2492 -1.1673 -1.8205 33 1 2.7181 -0.1433 -1.8230 34 1 2.7575 -2.8474 -1.1853 35 1 3.9330 -1.6723 -0.5227 36 1 1.9184 2.0006 3.3394 37 1 1.8764 1.4925 1.6305 38 1 -0.4295 2.2958 1.3988 39 1 0.5632 3.6099 2.0753 40 1 -2.2783 3.6110 2.3612 41 1 -2.4356 3.7035 4.1318 42 1 -2.7352 6.1673 3.0814 43 1 -1.8081 10.5817 2.9323 44 1 -1.9312 1.0756 2.8042 45 1 -2.0643 1.4748 4.5340 46 1 -0.7655 -0.6462 4.0880 47 1 0.1782 0.5918 4.9583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113360553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:35 Heat of formation + Delta-G solvation = -109.013392 kcal Electronic energy + Delta-G solvation = -29118.353311 eV Core-core repulsion = 25108.087064 eV Total energy + Delta-G solvation = -4010.266247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.03655 -40.58813 -39.71542 -38.53879 -36.13622 -35.61786 -34.43009 -33.71005 -32.36255 -30.97402 -30.17829 -28.22465 -27.19712 -25.41879 -24.79815 -23.96886 -22.44165 -21.58024 -21.24020 -20.27059 -19.97007 -18.33496 -17.80307 -17.66962 -17.34459 -16.85976 -16.62228 -16.35720 -16.15152 -15.85808 -15.73572 -15.46392 -15.25898 -15.02178 -14.64874 -14.51887 -14.27976 -14.16123 -13.86541 -13.73565 -13.58275 -13.25936 -13.00591 -12.80410 -12.58060 -12.42170 -12.38084 -12.31838 -12.23207 -12.15439 -11.95180 -11.84866 -11.58271 -11.42696 -10.99068 -10.65601 -10.38848 -10.19917 -9.81023 -9.18139 -8.38194 -5.98062 1.31948 1.37355 1.44325 1.45723 1.68044 1.99929 2.25051 2.58759 2.91756 3.17203 3.21980 3.28026 3.44696 3.70272 3.82795 3.95688 3.98679 4.09657 4.14774 4.17663 4.20675 4.26827 4.31250 4.38450 4.47895 4.51988 4.57560 4.60146 4.66413 4.73225 4.79490 4.85997 4.88816 4.93201 5.01894 5.02280 5.11658 5.24377 5.36144 5.55703 5.71896 5.86891 6.01346 6.12428 6.28786 6.63214 6.92636 7.02229 7.44408 8.00914 8.79294 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.002798 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.669377 B =10005.609115 C =10514.499752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 H 0.115 0.885 4 C -0.144 4.144 5 C 0.035 3.965 6 O -0.380 6.380 7 C 0.056 3.944 8 H 0.113 0.887 9 C 0.525 3.475 10 O -0.571 6.571 11 N -0.605 5.605 12 C 0.113 3.887 13 C 0.040 3.960 14 N -0.533 5.533 15 C 0.055 3.945 16 C 0.454 3.546 17 O -0.600 6.600 18 N -0.594 5.594 19 C -0.322 4.322 20 H 0.059 0.941 21 C -0.015 4.015 22 N -0.936 5.936 23 Si 0.961 3.039 24 H -0.259 1.259 25 H -0.278 1.278 26 H -0.231 1.231 27 C 0.049 3.951 28 C 0.117 3.883 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.388 0.612 43 H 0.278 0.722 44 H 0.042 0.958 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 -20.930 -7.880 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 H 0.133 0.867 4 C -0.182 4.182 5 C -0.041 4.041 6 O -0.299 6.299 7 C -0.005 4.005 8 H 0.130 0.870 9 C 0.314 3.686 10 O -0.450 6.450 11 N -0.339 5.339 12 C -0.009 4.009 13 C -0.088 4.088 14 N -0.259 5.259 15 C -0.076 4.076 16 C 0.242 3.758 17 O -0.484 6.484 18 N -0.236 5.236 19 C -0.451 4.451 20 H 0.077 0.923 21 C -0.214 4.214 22 N -0.577 5.577 23 Si 0.782 3.218 24 H -0.184 1.184 25 H -0.204 1.204 26 H -0.154 1.154 27 C -0.079 4.079 28 C -0.005 4.005 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.140 0.860 42 H 0.223 0.777 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.127 0.873 46 H 0.110 0.890 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.926 -21.342 -7.127 22.520 hybrid contribution -1.183 0.695 -0.585 1.492 sum -0.257 -20.647 -7.713 22.042 Atomic orbital electron populations 1.22067 0.94485 1.01565 1.03168 1.22640 0.96966 1.00773 0.93013 0.86702 1.23058 1.00966 0.97044 0.97091 1.23736 0.97829 1.00229 0.82338 1.89232 1.83533 1.24386 1.32748 1.23090 0.97727 0.85710 0.93926 0.86960 1.20542 0.82542 0.82984 0.82505 1.90672 1.56722 1.31641 1.66012 1.48192 1.42311 1.06820 1.36567 1.22166 0.95425 0.81102 1.02237 1.22674 0.94815 1.00511 0.90818 1.61435 1.20290 1.03962 1.40175 1.21818 0.93831 0.87944 1.04022 1.20792 0.87827 0.86130 0.81057 1.90512 1.16171 1.87472 1.54224 1.42057 1.08826 1.05287 1.67392 1.18990 0.93765 0.83127 1.49265 0.92315 1.26061 1.05119 0.93782 0.96408 1.69801 1.38835 0.98607 1.50438 0.85413 0.76795 0.79952 0.79664 1.18403 1.20360 1.15408 1.22518 0.95804 0.87400 1.02178 1.21733 0.89391 0.99635 0.89729 0.93959 0.92269 0.90385 0.90155 0.87543 0.87824 0.90144 0.90678 0.87024 0.93508 0.89926 0.90591 0.86014 0.77654 0.91285 0.93945 0.87296 0.89048 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 7.96 71.98 0.57 -2.23 16 2 C -0.12 -1.74 2.62 -9.78 -0.03 -1.77 16 3 H 0.12 1.33 6.52 -2.39 -0.02 1.32 16 4 C -0.14 -1.66 6.74 31.61 0.21 -1.45 16 5 C 0.03 0.49 7.63 72.49 0.55 1.04 16 6 O -0.38 -9.10 10.91 -130.60 -1.42 -10.53 16 7 C 0.06 1.14 2.70 30.35 0.08 1.22 16 8 H 0.11 1.82 7.89 -2.39 -0.02 1.80 16 9 C 0.53 13.69 5.50 87.65 0.48 14.17 16 10 O -0.57 -19.62 16.00 15.32 0.25 -19.38 16 11 N -0.60 -13.84 2.14 -817.11 -1.75 -15.59 16 12 C 0.11 2.44 5.71 86.50 0.49 2.93 16 13 C 0.04 1.04 5.04 86.54 0.44 1.47 16 14 N -0.53 -14.17 4.37 -898.94 -3.93 -18.10 16 15 C 0.05 1.51 5.45 85.56 0.47 1.98 16 16 C 0.45 18.81 7.44 87.66 0.65 19.47 16 17 O -0.60 -30.23 13.91 -3.08 -0.04 -30.27 16 18 N -0.59 -26.33 5.09 -306.98 -1.56 -27.89 16 19 C -0.32 -18.05 10.16 84.04 0.85 -17.20 16 20 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 21 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 22 N -0.94 -55.16 13.96 21.66 0.30 -54.86 16 23 Si 0.96 37.54 27.74 68.60 1.90 39.45 16 24 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 25 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 27 C 0.05 0.99 5.62 86.37 0.49 1.48 16 28 C 0.12 2.58 6.59 86.34 0.57 3.15 16 29 H 0.04 0.92 8.13 -2.39 -0.02 0.90 16 30 H 0.06 1.19 3.76 -2.39 -0.01 1.18 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 0.94 7.73 -2.39 -0.02 0.92 16 33 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.11 1.83 4.00 -2.39 -0.01 1.82 16 38 H 0.05 1.07 6.42 -2.39 -0.02 1.06 16 39 H 0.08 2.75 5.76 -2.39 -0.01 2.74 16 40 H 0.08 1.75 8.13 -2.38 -0.02 1.73 16 41 H 0.12 2.70 7.97 -2.39 -0.02 2.69 16 42 H 0.39 14.25 5.76 -92.71 -0.53 13.71 16 43 H 0.28 15.02 8.31 -92.71 -0.77 14.24 16 44 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.11 1.78 7.99 -2.39 -0.02 1.76 16 46 H 0.09 2.10 7.06 -2.39 -0.02 2.08 16 47 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -79.70 359.32 0.45 -79.25 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.41 Total: 34.00 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 6.30 Total: 23.91 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -6.94 Total: -116.43 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -1.22 Total: -60.18 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 1.90 Total: 39.45 kcal Total: -79.70 0.45 -79.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113360553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.764 kcal (2) G-P(sol) polarization free energy of solvation -79.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds