Wall clock time and date at job start Tue Mar 31 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21278 * 119.99985 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00161 * 180.02562 * 3 2 1 6 6 C 1.47027 * 125.64300 * 359.68625 * 5 3 2 7 7 C 1.54343 * 107.26182 * 178.85335 * 6 5 3 8 8 C 1.55157 * 103.01877 * 338.14305 * 7 6 5 9 9 H 1.09001 * 110.99982 * 277.23071 * 8 7 6 10 10 N 1.46498 * 111.00205 * 153.38339 * 8 7 6 11 11 C 1.34779 * 120.00286 * 92.80433 * 10 8 7 12 12 O 1.21351 * 119.99822 * 359.97438 * 11 10 8 13 13 C 1.49450 * 120.00155 * 180.02562 * 11 10 8 14 14 O 1.21351 * 120.00022 * 359.97438 * 13 11 10 15 15 N 1.34771 * 119.99889 * 180.02562 * 13 11 10 16 16 C 1.46507 * 120.00162 * 179.97438 * 15 13 11 17 17 C 1.52997 * 109.47470 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47209 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47125 * 180.02562 * 18 17 16 20 20 H 1.08003 * 120.00061 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99872 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00473 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99980 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46967 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46874 * 120.00227 * 23 21 19 26 26 H 1.48503 * 109.47212 * 240.00459 * 23 21 19 27 27 C 1.47421 * 125.65118 * 179.97438 * 5 3 2 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.09000 * 109.88487 * 298.39501 * 6 5 3 34 34 H 1.09000 * 109.88131 * 59.56990 * 6 5 3 35 35 H 1.09003 * 110.84808 * 219.67533 * 7 6 5 36 36 H 1.09000 * 110.51481 * 96.45379 * 7 6 5 37 37 H 0.97003 * 120.00112 * 272.79792 * 10 8 7 38 38 H 0.97002 * 120.00452 * 359.97438 * 15 13 11 39 39 H 1.09000 * 109.46782 * 300.00028 * 16 15 13 40 40 H 1.08995 * 109.47048 * 59.99620 * 16 15 13 41 41 H 1.09001 * 109.47041 * 300.00356 * 17 16 15 42 42 H 1.09005 * 109.47027 * 60.00062 * 17 16 15 43 43 H 1.09006 * 109.47259 * 299.99686 * 18 17 16 44 44 H 1.08995 * 109.47162 * 60.00059 * 18 17 16 45 45 H 0.96998 * 120.00380 * 179.97438 * 22 21 19 46 46 H 1.08995 * 110.36496 * 322.93165 * 27 5 3 47 47 H 1.09004 * 110.36441 * 85.24843 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 -0.0005 6 6 4.4181 0.6491 0.0054 7 6 5.7690 1.3950 -0.0272 8 6 5.3890 2.7809 -0.6124 9 1 5.3403 2.7453 -1.7007 10 7 6.3253 3.8146 -0.1642 11 6 7.4006 4.1219 -0.9165 12 8 7.5934 3.5419 -1.9648 13 6 8.3560 5.1761 -0.4590 14 8 8.1634 5.7558 0.5896 15 7 9.4309 5.4837 -1.2115 16 6 10.3673 6.5176 -0.7633 17 6 11.4898 6.6695 -1.7918 18 6 12.4673 7.7495 -1.3240 19 6 13.5726 7.8996 -2.3373 20 1 13.5776 7.2857 -3.2259 21 6 14.5774 8.8207 -2.1301 22 7 14.5716 9.5680 -1.0478 23 14 15.9480 9.0063 -3.3858 24 1 15.7256 8.0561 -4.5052 25 1 15.9541 10.3956 -3.9101 26 1 17.2534 8.7149 -2.7405 27 6 3.9831 3.0020 -0.0011 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 4.3475 0.0455 0.9102 34 1 4.3265 0.0133 -0.8752 35 1 6.4789 0.8834 -0.6771 36 1 6.1722 1.4991 0.9801 37 1 6.1713 4.2781 0.6739 38 1 9.5847 5.0207 -2.0499 39 1 9.8392 7.4653 -0.6587 40 1 10.7925 6.2304 0.1983 41 1 12.0178 5.7216 -1.8961 42 1 11.0649 6.9565 -2.7537 43 1 11.9390 8.6974 -1.2202 44 1 12.8922 7.4631 -0.3621 45 1 15.2787 10.2157 -0.9019 46 1 3.4057 3.6914 -0.6170 47 1 4.0679 3.3817 1.0171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117269593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:53 Heat of formation + Delta-G solvation = -147.082388 kcal Electronic energy + Delta-G solvation = -26352.285397 eV Core-core repulsion = 22340.368354 eV Total energy + Delta-G solvation = -4011.917043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90571 -41.09480 -39.80556 -38.56635 -37.17955 -35.66630 -35.08447 -33.72687 -33.04195 -31.75775 -29.97815 -28.94487 -26.64445 -25.55142 -24.18693 -23.70850 -22.36958 -22.10955 -21.48033 -20.14364 -19.60160 -18.54282 -18.31457 -18.19242 -17.40691 -17.16737 -16.66721 -16.46995 -16.34815 -16.15665 -16.06024 -15.44181 -15.01168 -14.97518 -14.56471 -14.43173 -14.27736 -13.94638 -13.77002 -13.56818 -13.52513 -13.15177 -13.06148 -12.93534 -12.78421 -12.67950 -12.58593 -12.54469 -12.36922 -12.07302 -11.86970 -11.69836 -11.56049 -11.21630 -10.99303 -10.74911 -10.55041 -10.42953 -10.29082 -9.76833 -8.19252 -6.30013 0.26630 1.13041 1.41940 1.42769 1.55462 1.57293 1.90993 2.06489 2.41948 2.61402 3.15018 3.22310 3.36247 3.50179 3.75739 3.89588 4.08794 4.10546 4.18926 4.19091 4.20650 4.27764 4.52619 4.53227 4.65534 4.68079 4.78397 4.86864 4.92267 4.93121 4.96172 5.00639 5.06094 5.09815 5.15683 5.22278 5.25662 5.36367 5.52433 5.71451 5.83468 5.85094 6.22811 6.28624 6.40949 6.65290 6.87208 6.87850 7.08132 7.39608 8.92790 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.047653 B = 0.001532 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.435657 B =18276.685102 C =18494.183356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.519 3.481 4 O -0.590 6.590 5 N -0.620 5.620 6 C 0.103 3.897 7 C -0.140 4.140 8 C 0.132 3.868 9 H 0.103 0.897 10 N -0.680 5.680 11 C 0.523 3.477 12 O -0.533 6.533 13 C 0.502 3.498 14 O -0.547 6.547 15 N -0.686 5.686 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.024 3.976 19 C -0.541 4.541 20 H 0.064 0.936 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.964 3.036 24 H -0.260 1.260 25 H -0.281 1.281 26 H -0.280 1.280 27 C 0.100 3.900 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.421 0.579 38 H 0.420 0.580 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.066 0.934 43 H -0.004 1.004 44 H -0.003 1.003 45 H 0.263 0.737 46 H 0.071 0.929 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.634 -24.895 2.799 35.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.310 3.690 4 O -0.471 6.471 5 N -0.354 5.354 6 C -0.019 4.019 7 C -0.179 4.179 8 C 0.027 3.973 9 H 0.121 0.879 10 N -0.334 5.334 11 C 0.303 3.697 12 O -0.409 6.409 13 C 0.282 3.718 14 O -0.425 6.425 15 N -0.338 5.338 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.014 4.014 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.198 4.198 22 N -0.573 5.573 23 Si 0.789 3.211 24 H -0.184 1.184 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.024 4.024 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.260 0.740 38 H 0.257 0.743 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.037 -24.314 2.872 35.018 hybrid contribution 0.939 0.965 -0.304 1.380 sum -24.098 -23.349 2.568 33.652 Atomic orbital electron populations 1.21558 0.93677 1.02701 1.01758 1.21685 0.97838 0.90833 1.06697 1.21312 0.79944 0.93217 0.74523 1.90710 1.55591 1.48584 1.52168 1.48518 1.05649 1.07985 1.73266 1.22295 0.84245 0.90739 1.04652 1.23103 0.97432 0.93951 1.03369 1.22185 0.86954 0.87648 1.00558 0.87910 1.45497 1.23329 1.39311 1.25220 1.19863 0.82601 0.83016 0.84225 1.90771 1.74280 1.52568 1.23308 1.20290 0.82872 0.84059 0.84577 1.90766 1.74753 1.53228 1.23789 1.45877 1.23680 1.39066 1.25160 1.21478 0.89596 0.90066 0.98469 1.21640 0.94843 1.00170 0.97750 1.18944 0.93448 0.93372 0.95635 1.21716 1.08865 1.20326 1.07042 0.91745 1.25961 1.00915 0.95410 0.97532 1.70101 1.34727 1.24251 1.28271 0.85412 0.78541 0.78084 0.79074 1.18396 1.20641 1.20543 1.22260 0.91947 0.86306 1.01841 0.93733 0.89504 0.93629 0.86252 0.86412 0.88228 0.88749 0.88472 0.89011 0.74035 0.74267 0.91814 0.91600 0.91325 0.91506 0.98580 0.98454 0.92821 0.91047 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.20 71.98 0.66 -0.67 16 2 C -0.13 -0.89 5.61 29.85 0.17 -0.72 16 3 C 0.52 8.05 7.85 87.66 0.69 8.74 16 4 O -0.59 -15.11 16.24 -3.02 -0.05 -15.16 16 5 N -0.62 -7.19 3.33 -811.80 -2.70 -9.89 16 6 C 0.10 0.46 6.49 86.73 0.56 1.02 16 7 C -0.14 -1.03 6.64 31.79 0.21 -0.81 16 8 C 0.13 1.64 3.42 46.38 0.16 1.79 16 9 H 0.10 1.55 7.54 -2.39 -0.02 1.53 16 10 N -0.68 -10.76 5.19 -437.33 -2.27 -13.03 16 11 C 0.52 11.54 7.89 87.27 0.69 12.23 16 12 O -0.53 -13.47 16.12 -3.25 -0.05 -13.53 16 13 C 0.50 13.48 7.89 87.27 0.69 14.17 16 14 O -0.55 -17.21 16.48 -3.25 -0.05 -17.26 16 15 N -0.69 -18.75 5.55 -464.41 -2.58 -21.33 16 16 C 0.13 4.17 5.67 86.38 0.49 4.66 16 17 C -0.11 -3.97 5.27 30.59 0.16 -3.80 16 18 C 0.02 1.20 4.97 29.85 0.15 1.34 16 19 C -0.54 -29.83 9.11 25.60 0.23 -29.60 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 22 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 23 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 C 0.10 1.32 6.55 86.85 0.57 1.89 16 28 H 0.04 0.58 8.10 -2.39 -0.02 0.56 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.04 0.58 8.10 -2.39 -0.02 0.56 16 31 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.42 5.92 8.04 -92.71 -0.75 5.18 16 38 H 0.42 10.16 7.94 -92.71 -0.74 9.42 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 44 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 46 H 0.07 1.21 8.04 -2.39 -0.02 1.19 16 47 H 0.08 0.99 8.00 -2.38 -0.02 0.97 16 Total: -1.00 -75.68 396.74 0.00 -75.68 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -0.50 Total: 14.14 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 5.89 Total: 10.68 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -7.26 Total: -100.06 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -0.16 Total: -45.95 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -75.68 0.00 -75.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117269593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.406 kcal (2) G-P(sol) polarization free energy of solvation -75.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds