Wall clock time and date at job start Tue Mar 31 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 119.99608 * 2 1 4 4 N 1.34772 * 120.00316 * 179.97438 * 2 1 3 5 5 C 1.47159 * 121.04069 * 0.02562 * 4 2 1 6 6 C 1.53275 * 108.51302 * 129.00424 * 5 4 2 7 7 H 1.08997 * 109.51239 * 292.81742 * 6 5 4 8 8 C 1.53004 * 109.51067 * 172.71733 * 6 5 4 9 9 O 1.43056 * 109.22896 * 52.74106 * 6 5 4 10 10 C 1.42353 * 114.26820 * 298.43350 * 9 6 5 11 11 C 1.54153 * 110.11562 * 182.65135 * 10 9 6 12 12 C 1.55032 * 102.82024 * 140.88698 * 11 10 9 13 13 N 1.48636 * 103.30860 * 322.97624 * 12 11 10 14 14 C 1.46903 * 111.03516 * 159.42601 * 13 12 11 15 15 C 1.50695 * 109.47162 * 52.60170 * 14 13 12 16 16 O 1.21290 * 120.00138 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99887 * 180.02562 * 15 14 13 18 18 C 1.37091 * 119.99871 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00357 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99703 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00223 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99990 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46878 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46965 * 120.00287 * 22 20 18 25 25 H 1.48491 * 109.47542 * 240.00447 * 22 20 18 26 26 C 1.48024 * 105.80275 * 38.90055 * 13 12 11 27 27 C 1.47262 * 121.04155 * 179.97438 * 4 2 1 28 28 H 1.09004 * 109.46971 * 239.99921 * 1 2 3 29 29 H 1.08995 * 109.47455 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46819 * 120.00294 * 1 2 3 31 31 H 1.08994 * 109.63253 * 248.71717 * 5 4 2 32 32 H 1.09003 * 109.62890 * 9.10195 * 5 4 2 33 33 H 1.08999 * 109.47134 * 60.00618 * 8 6 5 34 34 H 1.09000 * 109.46895 * 180.02562 * 8 6 5 35 35 H 1.08999 * 109.47341 * 299.99620 * 8 6 5 36 36 H 1.08995 * 110.74352 * 259.22080 * 11 10 9 37 37 H 1.08995 * 110.74072 * 22.37372 * 11 10 9 38 38 H 1.09003 * 110.65720 * 81.40421 * 12 11 10 39 39 H 1.08993 * 110.65978 * 204.34236 * 12 11 10 40 40 H 1.08999 * 109.46638 * 172.60419 * 14 13 12 41 41 H 1.09000 * 109.46970 * 292.59749 * 14 13 12 42 42 H 0.96998 * 119.99693 * 359.97438 * 17 15 14 43 43 H 0.97002 * 120.00354 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.97578 * 215.41839 * 26 13 12 45 45 H 1.09000 * 109.97195 * 94.17669 * 26 13 12 46 46 H 1.09000 * 109.67950 * 110.02677 * 27 4 2 47 47 H 1.08994 * 109.68228 * 349.47610 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4684 -2.4548 0.0005 6 6 2.0337 -3.3237 -1.1285 7 1 1.7768 -2.8820 -2.0913 8 6 1.4393 -4.7306 -1.0369 9 8 3.4566 -3.3958 -1.0003 10 6 4.1180 -2.1396 -1.1056 11 6 5.6446 -2.3354 -1.0206 12 6 6.1800 -1.3227 -2.0652 13 7 5.1717 -1.3902 -3.1552 14 6 5.2232 -0.1869 -3.9964 15 6 6.6374 0.0375 -4.4661 16 8 7.5161 -0.7292 -4.1325 17 7 6.9261 1.0908 -5.2560 18 6 8.2127 1.2952 -5.6828 19 1 8.9951 0.6126 -5.3859 20 6 8.5101 2.3807 -6.4976 21 7 7.5582 3.2117 -6.8586 22 14 10.2634 2.6598 -7.0787 23 1 11.1405 1.5910 -6.5366 24 1 10.3040 2.6276 -8.5628 25 1 10.7394 3.9820 -6.5991 26 6 3.8587 -1.5115 -2.4827 27 6 3.6533 -1.1938 0.0000 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 1.6168 -2.9554 0.9573 32 1 0.4042 -2.2844 -0.1623 33 1 0.3549 -4.6738 -1.1309 34 1 1.8421 -5.3481 -1.8398 35 1 1.6981 -5.1725 -0.0747 36 1 6.0103 -2.0910 -0.0233 37 1 5.9187 -3.3550 -1.2915 38 1 6.2212 -0.3191 -1.6418 39 1 7.1622 -1.6266 -2.4271 40 1 4.5703 -0.3186 -4.8592 41 1 4.8913 0.6753 -3.4179 42 1 6.2234 1.7041 -5.5224 43 1 7.7659 3.9697 -7.4271 44 1 3.1992 -2.1536 -3.0666 45 1 3.4088 -0.5259 -2.3637 46 1 4.0143 -1.5512 0.9643 47 1 4.0385 -0.1918 -0.1883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131617727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:35 Heat of formation + Delta-G solvation = -93.593574 kcal Electronic energy + Delta-G solvation = -29109.007890 eV Core-core repulsion = 25099.410296 eV Total energy + Delta-G solvation = -4009.597594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12077 -39.27130 -38.40280 -36.91965 -35.03723 -34.01021 -33.25065 -31.34083 -30.91944 -30.46109 -28.44788 -27.42632 -26.63328 -25.11582 -23.98881 -22.42772 -21.00762 -20.21211 -19.32986 -19.16690 -17.84020 -17.40929 -17.21323 -16.34588 -16.15618 -15.86799 -15.38260 -15.07069 -14.65243 -14.49372 -14.19349 -14.05005 -13.95224 -13.68226 -13.43207 -13.17122 -13.02320 -12.80920 -12.70418 -12.48543 -12.39493 -12.21857 -11.85728 -11.73678 -11.58247 -11.49033 -11.37028 -11.12748 -11.00285 -10.93099 -10.63015 -10.32113 -10.22685 -10.19040 -10.01795 -9.49035 -8.81530 -8.36216 -8.00303 -7.88795 -6.40725 -3.81582 2.33220 2.57016 3.17291 3.27902 3.35038 3.35420 3.89952 4.01405 4.18375 4.26720 4.29850 4.47289 4.54456 4.72158 4.72551 4.82278 4.85317 4.96397 4.99286 5.11182 5.14481 5.21365 5.26212 5.28821 5.42521 5.46080 5.51072 5.56541 5.63148 5.70674 5.75819 5.82113 5.84820 5.93493 5.99018 6.08785 6.26499 6.30763 6.64051 7.03173 7.05761 7.21749 7.27448 7.56507 7.85756 8.06933 8.62221 9.18658 9.54574 10.05934 10.77027 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.002896 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.498724 B = 9666.812707 C =10426.594330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.540 6.540 4 N -0.618 5.618 5 C 0.078 3.922 6 C 0.067 3.933 7 H 0.067 0.933 8 C -0.142 4.142 9 O -0.356 6.356 10 C 0.100 3.900 11 C -0.109 4.109 12 C 0.039 3.961 13 N -0.488 5.488 14 C 0.035 3.965 15 C 0.443 3.557 16 O -0.580 6.580 17 N -0.561 5.561 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.016 3.984 27 C 0.093 3.907 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.077 0.923 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.824 -11.727 14.448 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.416 6.416 4 N -0.353 5.353 5 C -0.045 4.045 6 C 0.008 3.992 7 H 0.085 0.915 8 C -0.200 4.200 9 O -0.275 6.275 10 C 0.059 3.941 11 C -0.147 4.147 12 C -0.088 4.088 13 N -0.213 5.213 14 C -0.096 4.096 15 C 0.229 3.771 16 O -0.465 6.465 17 N -0.197 5.197 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.112 4.112 27 C -0.030 4.030 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.057 0.943 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.226 0.774 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.714 -12.081 14.229 25.056 hybrid contribution -0.139 1.595 -0.099 1.604 sum -16.853 -10.486 14.130 24.365 Atomic orbital electron populations 1.21942 0.91580 1.05671 1.04055 1.20866 0.90705 0.82867 0.75529 1.90758 1.70690 1.30808 1.49360 1.48243 1.06879 1.06027 1.74104 1.22530 0.97378 0.84150 1.00424 1.22504 0.82397 0.96876 0.97381 0.91468 1.21719 1.00198 0.94439 1.03646 1.87975 1.17611 1.28692 1.93183 1.22348 0.94328 0.84005 0.93444 1.22580 0.89938 1.02317 0.99907 1.23550 0.99288 0.96742 0.89221 1.64675 1.01861 1.36411 1.18329 1.22119 0.97836 0.91416 0.98270 1.19657 0.89273 0.83926 0.84262 1.90430 1.48601 1.47118 1.60384 1.41856 1.10614 1.23726 1.43533 1.19755 0.85854 1.10037 1.27160 0.87782 1.25277 0.99732 0.95788 0.97169 1.69622 1.32731 1.15287 1.36552 0.85795 0.81918 0.78306 0.78295 1.19181 1.20744 1.20771 1.23448 0.93797 1.00010 0.93983 1.22330 0.79585 1.01996 0.99052 0.89385 0.88787 0.89314 0.90352 0.88702 0.90893 0.91071 0.91561 0.90414 0.89045 0.94309 0.85768 0.89292 0.93285 0.77443 0.91898 0.90023 0.93404 0.90498 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 8.69 36.00 0.31 -0.82 16 2 C 0.51 5.82 7.82 -10.99 -0.09 5.74 16 3 O -0.54 -8.76 16.57 5.56 0.09 -8.67 16 4 N -0.62 -6.33 2.90 -172.54 -0.50 -6.83 16 5 C 0.08 0.54 5.82 -3.54 -0.02 0.52 16 6 C 0.07 0.56 3.10 -26.59 -0.08 0.48 16 7 H 0.07 0.60 6.42 -51.93 -0.33 0.27 16 8 C -0.14 -0.85 9.57 37.16 0.36 -0.50 16 9 O -0.36 -4.21 9.82 -35.23 -0.35 -4.55 16 10 C 0.10 1.27 0.97 -89.86 -0.09 1.18 16 11 C -0.11 -1.48 6.34 -25.05 -0.16 -1.64 16 12 C 0.04 0.68 5.30 -1.79 -0.01 0.67 16 13 N -0.49 -8.72 5.27 -231.91 -1.22 -9.94 16 14 C 0.04 0.68 5.52 -4.98 -0.03 0.65 16 15 C 0.44 10.70 7.49 -10.99 -0.08 10.62 16 16 O -0.58 -15.51 13.10 5.55 0.07 -15.44 16 17 N -0.56 -14.55 5.29 -10.97 -0.06 -14.61 16 18 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 19 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 22 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.02 0.24 5.47 -2.91 -0.02 0.22 16 27 C 0.09 1.11 4.97 -3.76 -0.02 1.10 16 28 H 0.09 0.37 8.01 -51.93 -0.42 -0.04 16 29 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.09 0.42 7.67 -51.93 -0.40 0.02 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.39 6.05 -51.93 -0.31 0.08 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 37 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 38 H 0.04 0.69 8.02 -51.93 -0.42 0.27 16 39 H 0.12 2.53 5.99 -51.93 -0.31 2.21 16 40 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.05 0.90 7.82 -51.93 -0.41 0.50 16 42 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.08 1.14 6.45 -51.93 -0.34 0.81 16 45 H 0.05 0.73 7.05 -51.93 -0.37 0.36 16 46 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 47 H 0.10 1.45 7.01 -51.93 -0.36 1.09 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -34.14 369.64 -8.12 -42.26 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -7.27 Total: 9.97 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -0.16 Total: 10.17 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -1.05 Total: -55.56 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.18 Total: -28.66 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.14 -8.12 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131617727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.338 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds