Wall clock time and date at job start Tue Mar 31 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 119.99608 * 2 1 4 4 N 1.34772 * 120.00316 * 179.97438 * 2 1 3 5 5 C 1.47159 * 121.04069 * 0.02562 * 4 2 1 6 6 C 1.53275 * 108.51302 * 129.00424 * 5 4 2 7 7 H 1.08997 * 109.51239 * 292.81742 * 6 5 4 8 8 C 1.53004 * 109.51067 * 172.71733 * 6 5 4 9 9 O 1.43056 * 109.22896 * 52.74106 * 6 5 4 10 10 C 1.42353 * 114.26820 * 298.43350 * 9 6 5 11 11 C 1.54153 * 110.11562 * 182.65135 * 10 9 6 12 12 C 1.55032 * 102.82024 * 140.88698 * 11 10 9 13 13 N 1.48636 * 103.30860 * 322.97624 * 12 11 10 14 14 C 1.46903 * 111.03516 * 159.42601 * 13 12 11 15 15 C 1.50695 * 109.47162 * 52.60170 * 14 13 12 16 16 O 1.21290 * 120.00138 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99887 * 180.02562 * 15 14 13 18 18 C 1.37091 * 119.99871 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00357 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99703 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00223 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99990 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46878 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46965 * 120.00287 * 22 20 18 25 25 H 1.48491 * 109.47542 * 240.00447 * 22 20 18 26 26 C 1.48024 * 105.80275 * 38.90055 * 13 12 11 27 27 C 1.47262 * 121.04155 * 179.97438 * 4 2 1 28 28 H 1.09004 * 109.46971 * 239.99921 * 1 2 3 29 29 H 1.08995 * 109.47455 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46819 * 120.00294 * 1 2 3 31 31 H 1.08994 * 109.63253 * 248.71717 * 5 4 2 32 32 H 1.09003 * 109.62890 * 9.10195 * 5 4 2 33 33 H 1.08999 * 109.47134 * 60.00618 * 8 6 5 34 34 H 1.09000 * 109.46895 * 180.02562 * 8 6 5 35 35 H 1.08999 * 109.47341 * 299.99620 * 8 6 5 36 36 H 1.08995 * 110.74352 * 259.22080 * 11 10 9 37 37 H 1.08995 * 110.74072 * 22.37372 * 11 10 9 38 38 H 1.09003 * 110.65720 * 81.40421 * 12 11 10 39 39 H 1.08993 * 110.65978 * 204.34236 * 12 11 10 40 40 H 1.08999 * 109.46638 * 172.60419 * 14 13 12 41 41 H 1.09000 * 109.46970 * 292.59749 * 14 13 12 42 42 H 0.96998 * 119.99693 * 359.97438 * 17 15 14 43 43 H 0.97002 * 120.00354 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.97578 * 215.41839 * 26 13 12 45 45 H 1.09000 * 109.97195 * 94.17669 * 26 13 12 46 46 H 1.09000 * 109.67950 * 110.02677 * 27 4 2 47 47 H 1.08994 * 109.68228 * 349.47610 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4684 -2.4548 0.0005 6 6 2.0337 -3.3237 -1.1285 7 1 1.7768 -2.8820 -2.0913 8 6 1.4393 -4.7306 -1.0369 9 8 3.4566 -3.3958 -1.0003 10 6 4.1180 -2.1396 -1.1056 11 6 5.6446 -2.3354 -1.0206 12 6 6.1800 -1.3227 -2.0652 13 7 5.1717 -1.3902 -3.1552 14 6 5.2232 -0.1869 -3.9964 15 6 6.6374 0.0375 -4.4661 16 8 7.5161 -0.7292 -4.1325 17 7 6.9261 1.0908 -5.2560 18 6 8.2127 1.2952 -5.6828 19 1 8.9951 0.6126 -5.3859 20 6 8.5101 2.3807 -6.4976 21 7 7.5582 3.2117 -6.8586 22 14 10.2634 2.6598 -7.0787 23 1 11.1405 1.5910 -6.5366 24 1 10.3040 2.6276 -8.5628 25 1 10.7394 3.9820 -6.5991 26 6 3.8587 -1.5115 -2.4827 27 6 3.6533 -1.1938 0.0000 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 1.6168 -2.9554 0.9573 32 1 0.4042 -2.2844 -0.1623 33 1 0.3549 -4.6738 -1.1309 34 1 1.8421 -5.3481 -1.8398 35 1 1.6981 -5.1725 -0.0747 36 1 6.0103 -2.0910 -0.0233 37 1 5.9187 -3.3550 -1.2915 38 1 6.2212 -0.3191 -1.6418 39 1 7.1622 -1.6266 -2.4271 40 1 4.5703 -0.3186 -4.8592 41 1 4.8913 0.6753 -3.4179 42 1 6.2234 1.7041 -5.5224 43 1 7.7659 3.9697 -7.4271 44 1 3.1992 -2.1536 -3.0666 45 1 3.4088 -0.5259 -2.3637 46 1 4.0143 -1.5512 0.9643 47 1 4.0385 -0.1918 -0.1883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131617727.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:35 Heat of formation + Delta-G solvation = -120.599278 kcal Electronic energy + Delta-G solvation = -29110.178946 eV Core-core repulsion = 25099.410296 eV Total energy + Delta-G solvation = -4010.768649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07438 -40.58848 -39.82002 -38.23959 -36.02633 -35.89222 -34.33434 -33.34474 -31.91176 -31.32334 -29.59265 -28.67616 -27.48101 -26.59951 -25.42856 -23.42673 -22.22231 -21.17542 -21.05755 -20.14148 -19.89870 -18.23557 -18.13266 -17.76944 -17.27230 -17.05181 -16.63357 -16.31900 -16.30531 -15.83655 -15.69778 -15.37719 -15.09409 -14.71902 -14.58251 -14.44065 -14.07286 -13.86547 -13.54169 -13.41769 -13.27635 -13.18948 -13.06710 -13.02207 -12.86490 -12.74702 -12.59636 -12.43728 -12.36491 -12.20124 -12.16447 -12.06070 -11.68775 -11.50888 -11.11363 -10.88938 -10.24664 -10.05445 -9.67360 -9.43733 -8.49846 -5.99099 1.34425 1.39938 1.51445 1.54724 1.81403 1.97031 2.25477 2.51525 2.69917 3.15706 3.19677 3.43526 3.48762 3.57903 3.66062 3.86860 4.03080 4.08811 4.15026 4.20211 4.23210 4.31309 4.34079 4.39412 4.41883 4.50617 4.52865 4.55650 4.62247 4.64035 4.76018 4.84071 4.96224 5.02464 5.05679 5.09219 5.15850 5.26756 5.37845 5.38376 5.72893 5.81710 6.01118 6.21698 6.28864 6.55225 7.04349 7.08264 7.49252 8.04254 8.67992 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019406 B = 0.002896 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.498724 B = 9666.812707 C =10426.594330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.502 3.498 3 O -0.601 6.601 4 N -0.616 5.616 5 C 0.078 3.922 6 C 0.057 3.943 7 H 0.062 0.938 8 C -0.136 4.136 9 O -0.368 6.368 10 C 0.112 3.888 11 C -0.100 4.100 12 C 0.040 3.960 13 N -0.503 5.503 14 C 0.048 3.952 15 C 0.441 3.559 16 O -0.609 6.609 17 N -0.571 5.571 18 C -0.332 4.332 19 H 0.082 0.918 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.996 3.004 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.271 1.271 26 C 0.023 3.977 27 C 0.095 3.905 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.027 0.973 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.057 0.943 42 H 0.395 0.605 43 H 0.278 0.722 44 H 0.091 0.909 45 H 0.041 0.959 46 H 0.091 0.909 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.187 -12.934 15.278 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.293 3.707 3 O -0.482 6.482 4 N -0.349 5.349 5 C -0.043 4.043 6 C -0.001 4.001 7 H 0.080 0.920 8 C -0.194 4.194 9 O -0.287 6.287 10 C 0.071 3.929 11 C -0.139 4.139 12 C -0.087 4.087 13 N -0.228 5.228 14 C -0.083 4.083 15 C 0.228 3.772 16 O -0.496 6.496 17 N -0.208 5.208 18 C -0.462 4.462 19 H 0.100 0.900 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.819 3.181 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.105 4.105 27 C -0.028 4.028 28 H 0.138 0.862 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.112 0.888 32 H 0.150 0.850 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.045 0.955 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.228 0.772 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.059 0.941 46 H 0.109 0.891 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.129 -13.329 15.063 27.757 hybrid contribution 0.541 1.888 -0.343 1.994 sum -18.587 -11.440 14.720 26.326 Atomic orbital electron populations 1.21986 0.87416 1.06290 1.06681 1.21829 0.92670 0.82088 0.74095 1.90733 1.72214 1.32998 1.52268 1.48378 1.06134 1.07264 1.73164 1.22804 0.98902 0.82112 1.00525 1.22829 0.80564 0.98856 0.97818 0.92042 1.21734 1.01801 0.92417 1.03433 1.87965 1.19875 1.27684 1.93168 1.22054 0.93744 0.84654 0.92449 1.22486 0.90879 1.00810 0.99679 1.23351 0.98025 0.97196 0.90164 1.64658 1.03704 1.35461 1.18988 1.21976 0.94469 0.92582 0.99315 1.20508 0.91050 0.82734 0.82920 1.90426 1.50244 1.47872 1.61012 1.41925 1.10126 1.24466 1.44267 1.19730 0.86511 1.10882 1.29053 0.89996 1.26103 1.03825 0.94918 0.96535 1.69688 1.34439 1.15508 1.36587 0.84830 0.76839 0.78244 0.78168 1.19585 1.19487 1.19622 1.23449 0.91924 1.00012 0.95153 1.22139 0.81313 1.00107 0.99274 0.86235 0.89392 0.86781 0.88848 0.84980 0.87868 0.92281 0.91105 0.88220 0.89249 0.95481 0.89197 0.87449 0.92481 0.77169 0.91245 0.89098 0.94094 0.89111 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 8.69 71.23 0.62 -0.98 16 2 C 0.50 10.70 7.82 87.66 0.69 11.39 16 3 O -0.60 -19.88 16.57 -3.03 -0.05 -19.93 16 4 N -0.62 -11.35 2.90 -818.20 -2.37 -13.72 16 5 C 0.08 0.78 5.82 86.35 0.50 1.28 16 6 C 0.06 0.79 3.10 30.69 0.10 0.88 16 7 H 0.06 0.93 6.42 -2.39 -0.02 0.91 16 8 C -0.14 -1.15 9.57 71.98 0.69 -0.46 16 9 O -0.37 -7.97 9.82 -148.98 -1.46 -9.43 16 10 C 0.11 2.76 0.97 -10.30 -0.01 2.75 16 11 C -0.10 -2.72 6.34 31.68 0.20 -2.52 16 12 C 0.04 1.45 5.30 86.66 0.46 1.91 16 13 N -0.50 -18.33 5.27 -887.64 -4.68 -23.01 16 14 C 0.05 1.89 5.52 85.55 0.47 2.36 16 15 C 0.44 22.13 7.49 87.65 0.66 22.79 16 16 O -0.61 -34.18 13.10 -3.06 -0.04 -34.22 16 17 N -0.57 -30.69 5.29 -306.99 -1.62 -32.31 16 18 C -0.33 -19.37 9.68 84.04 0.81 -18.56 16 19 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16 20 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 21 N -0.92 -51.16 13.05 21.66 0.28 -50.88 16 22 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 C 0.02 0.65 5.47 86.28 0.47 1.12 16 27 C 0.10 2.21 4.97 86.14 0.43 2.64 16 28 H 0.12 0.43 8.01 -2.39 -0.02 0.41 16 29 H 0.09 1.01 8.12 -2.39 -0.02 0.99 16 30 H 0.11 0.55 7.67 -2.39 -0.02 0.53 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.13 0.35 6.05 -2.39 -0.01 0.34 16 33 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.10 2.24 7.75 -2.39 -0.02 2.22 16 37 H 0.09 2.47 8.07 -2.39 -0.02 2.45 16 38 H 0.03 1.02 8.02 -2.39 -0.02 1.00 16 39 H 0.09 3.90 5.99 -2.39 -0.01 3.88 16 40 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 41 H 0.06 2.16 7.82 -2.39 -0.02 2.14 16 42 H 0.39 20.41 7.90 -92.71 -0.73 19.67 16 43 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.09 2.43 6.45 -2.39 -0.02 2.42 16 45 H 0.04 1.24 7.05 -2.39 -0.02 1.23 16 46 H 0.09 1.84 8.04 -2.39 -0.02 1.82 16 47 H 0.07 2.16 7.01 -2.39 -0.02 2.14 16 Total: -1.00 -78.11 369.64 -1.10 -79.22 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: 0.26 Total: 34.07 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 6.55 Total: 24.31 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -8.39 Total: -119.91 kcal Atomic # 8 Polarization: -62.02 SS G_CDS: -1.55 Total: -63.57 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -78.11 -1.10 -79.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131617727.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.380 kcal (2) G-P(sol) polarization free energy of solvation -78.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds