Wall clock time and date at job start Tue Mar 31 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21278 * 120.00122 * 2 1 4 4 N 1.34776 * 119.99681 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99437 * 180.02562 * 4 2 1 6 6 C 1.50710 * 109.46637 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99748 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99631 * 179.97438 * 6 5 4 9 9 C 1.47164 * 121.06238 * 359.97438 * 8 6 5 10 10 C 1.53286 * 108.51109 * 231.19293 * 9 8 6 11 11 H 1.09005 * 109.50989 * 66.96382 * 10 9 8 12 12 C 1.53003 * 109.51481 * 187.06217 * 10 9 8 13 13 O 1.43088 * 109.22501 * 307.04084 * 10 9 8 14 14 C 1.42064 * 114.37638 * 61.14470 * 13 10 9 15 15 C 1.54515 * 110.34053 * 177.35531 * 14 13 10 16 16 C 1.55023 * 101.56839 * 276.06410 * 15 14 13 17 17 N 1.47534 * 104.87830 * 323.67868 * 16 15 14 18 18 C 1.36929 * 125.64584 * 203.98976 * 17 16 15 19 19 H 1.08001 * 120.00315 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99910 * 359.95912 * 18 17 16 21 21 N 1.31612 * 120.00109 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47324 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47277 * 119.99702 * 22 20 18 25 25 H 1.48501 * 109.46874 * 239.99732 * 22 20 18 26 26 C 1.47185 * 108.69017 * 23.95214 * 17 16 15 27 27 C 1.47294 * 121.05737 * 180.02562 * 8 6 5 28 28 H 1.08995 * 109.46774 * 240.00471 * 1 2 3 29 29 H 1.08999 * 109.46594 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46786 * 120.00521 * 1 2 3 31 31 H 0.96997 * 120.00415 * 359.97438 * 4 2 1 32 32 H 1.08996 * 109.47241 * 60.00701 * 5 4 2 33 33 H 1.08997 * 109.47431 * 299.99637 * 5 4 2 34 34 H 1.09005 * 109.63115 * 350.89667 * 9 8 6 35 35 H 1.08997 * 109.63487 * 111.29057 * 9 8 6 36 36 H 1.09003 * 109.46861 * 59.99703 * 12 10 9 37 37 H 1.08995 * 109.47549 * 180.02562 * 12 10 9 38 38 H 1.09004 * 109.47194 * 300.00598 * 12 10 9 39 39 H 1.09002 * 111.01425 * 34.14718 * 15 14 13 40 40 H 1.09000 * 111.01186 * 157.98473 * 15 14 13 41 41 H 1.08999 * 110.35578 * 82.50000 * 16 15 14 42 42 H 1.09000 * 110.35606 * 204.78877 * 16 15 14 43 43 H 0.97003 * 120.00291 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.91093 * 239.16779 * 26 17 16 45 45 H 1.08996 * 109.91115 * 117.90229 * 26 17 16 46 46 H 1.09002 * 109.64129 * 10.94355 * 27 8 6 47 47 H 1.09004 * 109.81861 * 250.41960 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1483 -2.5881 0.0010 7 8 3.3601 -3.5098 0.0000 8 7 5.4733 -2.8343 0.0009 9 6 6.4502 -1.7337 0.0004 10 6 7.4544 -1.9748 -1.1323 11 1 6.9485 -1.8815 -2.0934 12 6 8.5805 -0.9427 -1.0453 13 8 8.0005 -3.2913 -1.0056 14 6 7.0413 -4.3352 -1.0970 15 6 7.7370 -5.7125 -1.0148 16 6 8.1746 -5.9280 -2.4863 17 7 7.0843 -5.3495 -3.2944 18 6 6.7813 -5.6895 -4.5857 19 1 5.9593 -5.2061 -5.0928 20 6 7.5307 -6.6555 -5.2432 21 7 8.5329 -7.2441 -4.6256 22 14 7.1177 -7.1188 -7.0051 23 1 5.9565 -6.3176 -7.4685 24 1 8.2884 -6.8442 -7.8766 25 1 6.7798 -8.5633 -7.0708 26 6 6.3759 -4.3471 -2.4822 27 6 5.9899 -4.2137 0.0002 28 1 -0.3633 -0.5137 0.8900 29 1 -0.3632 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 1.6959 -2.0073 0.0013 32 1 4.0089 -0.6533 0.8911 33 1 4.0096 -0.6536 -0.8889 34 1 5.9350 -0.7869 -0.1623 35 1 6.9722 -1.7068 0.9568 36 1 9.0870 -1.0377 -0.0848 37 1 9.2939 -1.1144 -1.8513 38 1 8.1626 0.0598 -1.1380 39 1 8.6011 -5.6749 -0.3515 40 1 7.0370 -6.4856 -0.6980 41 1 9.1107 -5.4057 -2.6838 42 1 8.2812 -6.9919 -2.6982 43 1 9.0568 -7.9188 -5.0852 44 1 5.3254 -4.6217 -2.3869 45 1 6.4648 -3.3643 -2.9450 46 1 5.1744 -4.9102 -0.1951 47 1 6.4413 -4.4398 0.9663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131620708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:06 Heat of formation + Delta-G solvation = -75.762918 kcal Electronic energy + Delta-G solvation = -29217.124695 eV Core-core repulsion = 25208.300296 eV Total energy + Delta-G solvation = -4008.824399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87833 -39.81832 -38.74124 -36.43154 -34.86787 -34.67083 -33.21207 -31.37798 -30.86981 -29.51261 -28.72761 -27.17899 -26.60833 -25.38323 -23.59229 -21.93028 -20.89664 -20.40895 -19.96695 -18.90275 -17.79356 -17.13250 -16.98503 -16.57221 -16.33711 -16.11215 -15.48309 -15.23198 -14.77612 -14.71104 -14.15769 -14.11381 -13.85344 -13.44671 -13.38965 -13.28247 -12.86495 -12.81499 -12.57418 -12.32205 -12.30728 -12.28780 -12.00443 -11.62801 -11.57471 -11.12874 -10.94092 -10.88657 -10.56267 -10.45580 -10.25914 -10.12674 -10.08352 -9.81452 -9.65452 -9.60460 -9.47713 -8.66321 -8.49359 -6.84635 -5.66270 -3.07732 2.28795 2.37707 2.46918 3.08585 3.39298 3.44797 3.47303 3.77755 4.09760 4.46471 4.53812 4.58752 4.78231 4.92976 4.95102 4.98471 5.03178 5.07111 5.09568 5.15263 5.28843 5.40249 5.46145 5.52098 5.52571 5.56991 5.63994 5.81260 5.83178 5.97799 5.98969 6.10801 6.17318 6.22046 6.41863 6.49445 6.57710 6.64158 7.11275 7.20420 7.54405 7.58771 7.61193 7.83172 7.84069 7.91376 8.33856 9.20820 9.80961 10.45782 11.37839 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.003434 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.275221 B = 8150.785103 C = 9157.567803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.550 6.550 4 N -0.719 5.719 5 C 0.100 3.900 6 C 0.512 3.488 7 O -0.536 6.536 8 N -0.606 5.606 9 C 0.075 3.925 10 C 0.068 3.932 11 H 0.070 0.930 12 C -0.141 4.141 13 O -0.352 6.352 14 C 0.094 3.906 15 C -0.130 4.130 16 C 0.157 3.843 17 N -0.600 5.600 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.122 3.878 27 C 0.099 3.901 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.413 0.587 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.018 0.982 42 H 0.108 0.892 43 H 0.252 0.748 44 H 0.029 0.971 45 H 0.024 0.976 46 H 0.104 0.896 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 12.741 13.328 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.428 6.428 4 N -0.375 5.375 5 C -0.027 4.027 6 C 0.299 3.701 7 O -0.413 6.413 8 N -0.339 5.339 9 C -0.048 4.048 10 C 0.009 3.991 11 H 0.087 0.913 12 C -0.199 4.199 13 O -0.271 6.271 14 C 0.053 3.947 15 C -0.169 4.169 16 C 0.033 3.967 17 N -0.326 5.326 18 C -0.350 4.350 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.004 4.004 27 C -0.023 4.023 28 H 0.108 0.892 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.251 0.749 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.125 0.875 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.122 0.878 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.974 12.819 13.181 20.041 hybrid contribution -0.539 -0.473 -0.976 1.211 sum -8.513 12.346 12.205 19.335 Atomic orbital electron populations 1.21899 0.91066 1.05612 1.04619 1.20848 0.90825 0.82963 0.75320 1.90727 1.70898 1.31408 1.49760 1.45821 1.05943 1.10105 1.75664 1.21089 0.82449 0.94494 1.04690 1.20425 0.82263 0.91035 0.76335 1.90700 1.54433 1.45905 1.50233 1.48120 1.05001 1.08096 1.72723 1.22624 0.91418 0.89853 1.00924 1.22456 0.94561 0.84906 0.97149 0.91254 1.21698 0.98052 0.96613 1.03504 1.87885 1.33280 1.12716 1.93175 1.22316 0.88829 0.89462 0.94104 1.23011 0.99871 0.91825 1.02158 1.21955 0.89359 1.02092 0.83311 1.44508 1.34303 1.42590 1.11239 1.19100 1.11956 1.16904 0.87071 0.90603 1.24776 0.97837 0.99269 0.98685 1.69797 1.21587 1.29901 1.35660 0.85999 0.77436 0.78016 0.84053 1.20577 1.21719 1.21677 1.21715 0.95128 0.93615 0.89970 1.22293 0.98090 0.82474 0.99477 0.89212 0.88791 0.89103 0.74853 0.88385 0.88282 0.88985 0.90004 0.91703 0.91056 0.91073 0.90954 0.90544 0.96399 0.87476 0.93736 0.95320 0.95876 0.87770 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.32 36.01 0.37 -0.69 16 2 C 0.51 5.28 7.94 -10.98 -0.09 5.20 16 3 O -0.55 -7.75 17.09 5.56 0.09 -7.66 16 4 N -0.72 -7.23 5.53 -61.46 -0.34 -7.57 16 5 C 0.10 1.04 4.53 -5.19 -0.02 1.02 16 6 C 0.51 6.64 7.78 -10.98 -0.09 6.55 16 7 O -0.54 -8.47 15.15 5.56 0.08 -8.39 16 8 N -0.61 -7.79 2.95 -172.66 -0.51 -8.30 16 9 C 0.07 0.78 5.82 -3.53 -0.02 0.76 16 10 C 0.07 0.89 3.17 -26.58 -0.08 0.80 16 11 H 0.07 1.02 6.24 -51.93 -0.32 0.70 16 12 C -0.14 -1.45 9.57 37.16 0.36 -1.09 16 13 O -0.35 -5.95 9.90 -35.23 -0.35 -6.30 16 14 C 0.09 1.65 0.81 -89.75 -0.07 1.58 16 15 C -0.13 -2.44 6.21 -24.87 -0.15 -2.60 16 16 C 0.16 3.85 5.89 -2.41 -0.01 3.84 16 17 N -0.60 -15.63 3.40 -170.19 -0.58 -16.21 16 18 C -0.22 -6.29 10.28 -15.06 -0.15 -6.44 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.89 10.09 55.49 0.56 -26.33 16 22 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.12 2.63 6.34 -3.32 -0.02 2.60 16 27 C 0.10 1.47 5.20 -3.89 -0.02 1.45 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.41 3.92 7.44 -40.82 -0.30 3.62 16 32 H 0.10 0.89 8.01 -51.93 -0.42 0.47 16 33 H 0.10 1.01 7.67 -51.93 -0.40 0.61 16 34 H 0.09 0.73 6.05 -51.93 -0.31 0.41 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.36 8.01 -51.93 -0.42 0.95 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.11 2.92 5.89 -51.93 -0.31 2.61 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.03 0.64 7.61 -51.93 -0.40 0.25 16 45 H 0.02 0.51 6.02 -51.93 -0.31 0.20 16 46 H 0.10 1.70 6.82 -51.93 -0.35 1.35 16 47 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -34.83 371.59 -7.88 -42.71 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.31 Total: 2.61 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -0.11 Total: 12.59 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.87 Total: -58.40 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.17 Total: -22.34 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.83 -7.88 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131620708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.051 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds