Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21278 * 120.00122 * 2 1 4 4 N 1.34776 * 119.99681 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99437 * 180.02562 * 4 2 1 6 6 C 1.50710 * 109.46637 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99748 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99631 * 179.97438 * 6 5 4 9 9 C 1.47164 * 121.06238 * 359.97438 * 8 6 5 10 10 C 1.53286 * 108.51109 * 231.19293 * 9 8 6 11 11 H 1.09005 * 109.50989 * 66.96382 * 10 9 8 12 12 C 1.53003 * 109.51481 * 187.06217 * 10 9 8 13 13 O 1.43088 * 109.22501 * 307.04084 * 10 9 8 14 14 C 1.42064 * 114.37638 * 61.14470 * 13 10 9 15 15 C 1.54515 * 110.34053 * 177.35531 * 14 13 10 16 16 C 1.55023 * 101.56839 * 276.06410 * 15 14 13 17 17 N 1.47534 * 104.87830 * 323.67868 * 16 15 14 18 18 C 1.36929 * 125.64584 * 203.98976 * 17 16 15 19 19 H 1.08001 * 120.00315 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99910 * 359.95912 * 18 17 16 21 21 N 1.31612 * 120.00109 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99774 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47324 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47277 * 119.99702 * 22 20 18 25 25 H 1.48501 * 109.46874 * 239.99732 * 22 20 18 26 26 C 1.47185 * 108.69017 * 23.95214 * 17 16 15 27 27 C 1.47294 * 121.05737 * 180.02562 * 8 6 5 28 28 H 1.08995 * 109.46774 * 240.00471 * 1 2 3 29 29 H 1.08999 * 109.46594 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.46786 * 120.00521 * 1 2 3 31 31 H 0.96997 * 120.00415 * 359.97438 * 4 2 1 32 32 H 1.08996 * 109.47241 * 60.00701 * 5 4 2 33 33 H 1.08997 * 109.47431 * 299.99637 * 5 4 2 34 34 H 1.09005 * 109.63115 * 350.89667 * 9 8 6 35 35 H 1.08997 * 109.63487 * 111.29057 * 9 8 6 36 36 H 1.09003 * 109.46861 * 59.99703 * 12 10 9 37 37 H 1.08995 * 109.47549 * 180.02562 * 12 10 9 38 38 H 1.09004 * 109.47194 * 300.00598 * 12 10 9 39 39 H 1.09002 * 111.01425 * 34.14718 * 15 14 13 40 40 H 1.09000 * 111.01186 * 157.98473 * 15 14 13 41 41 H 1.08999 * 110.35578 * 82.50000 * 16 15 14 42 42 H 1.09000 * 110.35606 * 204.78877 * 16 15 14 43 43 H 0.97003 * 120.00291 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.91093 * 239.16779 * 26 17 16 45 45 H 1.08996 * 109.91115 * 117.90229 * 26 17 16 46 46 H 1.09002 * 109.64129 * 10.94355 * 27 8 6 47 47 H 1.09004 * 109.81861 * 250.41960 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1483 -2.5881 0.0010 7 8 3.3601 -3.5098 0.0000 8 7 5.4733 -2.8343 0.0009 9 6 6.4502 -1.7337 0.0004 10 6 7.4544 -1.9748 -1.1323 11 1 6.9485 -1.8815 -2.0934 12 6 8.5805 -0.9427 -1.0453 13 8 8.0005 -3.2913 -1.0056 14 6 7.0413 -4.3352 -1.0970 15 6 7.7370 -5.7125 -1.0148 16 6 8.1746 -5.9280 -2.4863 17 7 7.0843 -5.3495 -3.2944 18 6 6.7813 -5.6895 -4.5857 19 1 5.9593 -5.2061 -5.0928 20 6 7.5307 -6.6555 -5.2432 21 7 8.5329 -7.2441 -4.6256 22 14 7.1177 -7.1188 -7.0051 23 1 5.9565 -6.3176 -7.4685 24 1 8.2884 -6.8442 -7.8766 25 1 6.7798 -8.5633 -7.0708 26 6 6.3759 -4.3471 -2.4822 27 6 5.9899 -4.2137 0.0002 28 1 -0.3633 -0.5137 0.8900 29 1 -0.3632 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 1.6959 -2.0073 0.0013 32 1 4.0089 -0.6533 0.8911 33 1 4.0096 -0.6536 -0.8889 34 1 5.9350 -0.7869 -0.1623 35 1 6.9722 -1.7068 0.9568 36 1 9.0870 -1.0377 -0.0848 37 1 9.2939 -1.1144 -1.8513 38 1 8.1626 0.0598 -1.1380 39 1 8.6011 -5.6749 -0.3515 40 1 7.0370 -6.4856 -0.6980 41 1 9.1107 -5.4057 -2.6838 42 1 8.2812 -6.9919 -2.6982 43 1 9.0568 -7.9188 -5.0852 44 1 5.3254 -4.6217 -2.3869 45 1 6.4648 -3.3643 -2.9450 46 1 5.1744 -4.9102 -0.1951 47 1 6.4413 -4.4398 0.9663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131620708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = -102.096144 kcal Electronic energy + Delta-G solvation = -29218.266589 eV Core-core repulsion = 25208.300296 eV Total energy + Delta-G solvation = -4009.966293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00230 -40.80556 -39.86340 -37.99085 -35.96956 -35.61208 -34.85003 -32.99135 -31.61503 -31.05668 -30.08590 -28.36576 -27.67438 -26.94506 -25.13276 -23.16908 -22.15312 -21.68213 -21.18861 -20.12573 -19.04348 -18.65960 -18.16802 -17.72414 -17.24083 -17.12643 -16.85525 -16.43213 -16.17772 -15.95892 -15.63356 -15.40404 -15.02268 -14.82510 -14.54702 -14.29672 -14.13663 -13.77837 -13.71671 -13.49638 -13.33683 -13.14184 -13.05018 -12.99022 -12.93485 -12.83045 -12.68849 -12.31415 -12.14665 -11.99241 -11.95956 -11.73415 -11.55390 -11.10683 -11.03670 -10.93945 -10.79468 -10.30354 -9.63644 -8.95552 -7.82303 -5.27509 1.30980 1.43233 1.44473 1.53164 1.54821 1.58455 2.29133 2.44762 2.57660 3.17241 3.26765 3.46269 3.58521 3.73339 3.84414 3.88291 3.95179 4.04469 4.13491 4.19867 4.25683 4.35814 4.41479 4.53597 4.55132 4.59207 4.65407 4.66701 4.67922 4.78243 4.90141 4.97081 4.99247 5.04790 5.08517 5.17360 5.25658 5.31759 5.39345 5.58442 5.75674 6.12635 6.24798 6.30739 6.44187 6.83224 7.05521 7.13598 7.70833 8.35193 9.19727 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.003434 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.275221 B = 8150.785103 C = 9157.567803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.510 3.490 3 O -0.592 6.592 4 N -0.719 5.719 5 C 0.104 3.896 6 C 0.512 3.488 7 O -0.568 6.568 8 N -0.608 5.608 9 C 0.080 3.920 10 C 0.058 3.942 11 H 0.045 0.955 12 C -0.135 4.135 13 O -0.369 6.369 14 C 0.108 3.892 15 C -0.117 4.117 16 C 0.162 3.838 17 N -0.622 5.622 18 C -0.245 4.245 19 H 0.074 0.926 20 C -0.062 4.062 21 N -0.945 5.945 22 Si 0.981 3.019 23 H -0.270 1.270 24 H -0.289 1.289 25 H -0.287 1.287 26 C 0.123 3.877 27 C 0.108 3.892 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.417 0.583 32 H 0.118 0.882 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.087 0.913 41 H -0.014 1.014 42 H 0.076 0.924 43 H 0.249 0.751 44 H 0.019 0.981 45 H 0.017 0.983 46 H 0.087 0.913 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 14.290 14.813 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.299 3.701 3 O -0.473 6.473 4 N -0.374 5.374 5 C -0.023 4.023 6 C 0.301 3.699 7 O -0.447 6.447 8 N -0.340 5.340 9 C -0.042 4.042 10 C 0.000 4.000 11 H 0.063 0.937 12 C -0.192 4.192 13 O -0.288 6.288 14 C 0.067 3.933 15 C -0.156 4.156 16 C 0.037 3.963 17 N -0.348 5.348 18 C -0.373 4.373 19 H 0.092 0.908 20 C -0.255 4.255 21 N -0.594 5.594 22 Si 0.809 3.191 23 H -0.195 1.195 24 H -0.216 1.216 25 H -0.213 1.213 26 C -0.002 4.002 27 C -0.015 4.015 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.255 0.745 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.004 0.996 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.105 0.895 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.032 14.389 14.684 22.455 hybrid contribution -0.189 -0.917 -1.482 1.753 sum -9.221 13.472 13.202 20.995 Atomic orbital electron populations 1.21934 0.87865 1.06365 1.06371 1.21556 0.92340 0.82129 0.74030 1.90706 1.72017 1.32699 1.51867 1.45902 1.05896 1.10358 1.75249 1.21121 0.82869 0.92560 1.05783 1.20845 0.81931 0.91753 0.75370 1.90688 1.55245 1.47130 1.51679 1.48185 1.05545 1.07893 1.72421 1.22785 0.90545 0.90106 1.00798 1.22749 0.96242 0.83691 0.97320 0.93666 1.21712 0.96870 0.97134 1.03492 1.87863 1.33739 1.14109 1.93126 1.22034 0.89260 0.89358 0.92654 1.22859 1.01132 0.93218 0.98367 1.21696 0.88157 0.99540 0.86926 1.44810 1.34935 1.43828 1.11266 1.19415 1.12134 1.17252 0.88546 0.90848 1.25632 0.97867 0.99288 1.02732 1.70043 1.22288 1.30122 1.36980 0.84973 0.77349 0.77634 0.79117 1.19464 1.21630 1.21324 1.21818 0.94516 0.91968 0.91933 1.22035 0.96601 0.83622 0.99220 0.87058 0.88578 0.87567 0.74474 0.86406 0.87847 0.86007 0.87477 0.90256 0.93100 0.87988 0.88590 0.89412 0.99600 0.90566 0.94089 0.96349 0.96540 0.89454 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.32 71.24 0.74 -0.91 16 2 C 0.51 9.59 7.94 87.66 0.70 10.29 16 3 O -0.59 -15.86 17.09 -3.02 -0.05 -15.92 16 4 N -0.72 -13.13 5.53 -466.76 -2.58 -15.71 16 5 C 0.10 1.92 4.53 85.64 0.39 2.31 16 6 C 0.51 12.38 7.78 87.66 0.68 13.07 16 7 O -0.57 -17.45 15.15 -3.02 -0.05 -17.50 16 8 N -0.61 -14.30 2.95 -818.57 -2.41 -16.71 16 9 C 0.08 1.39 5.82 86.35 0.50 1.89 16 10 C 0.06 1.42 3.17 30.69 0.10 1.52 16 11 H 0.05 1.32 6.24 -2.38 -0.01 1.31 16 12 C -0.13 -2.46 9.57 71.98 0.69 -1.77 16 13 O -0.37 -12.14 9.90 -148.97 -1.47 -13.62 16 14 C 0.11 3.76 0.81 -10.23 -0.01 3.76 16 15 C -0.12 -4.40 6.21 31.80 0.20 -4.20 16 16 C 0.16 8.23 5.89 86.87 0.51 8.74 16 17 N -0.62 -33.62 3.40 -692.35 -2.36 -35.98 16 18 C -0.24 -14.31 10.28 84.04 0.86 -13.45 16 19 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 21 N -0.95 -57.10 10.09 21.65 0.22 -56.89 16 22 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 C 0.12 5.44 6.34 86.48 0.55 5.99 16 27 C 0.11 3.03 5.20 86.05 0.45 3.48 16 28 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.95 8.12 -2.39 -0.02 0.93 16 30 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.42 7.24 7.44 -92.71 -0.69 6.55 16 32 H 0.12 1.75 8.01 -2.39 -0.02 1.73 16 33 H 0.10 1.86 7.67 -2.39 -0.02 1.85 16 34 H 0.12 1.43 6.05 -2.38 -0.01 1.42 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.09 3.08 8.01 -2.39 -0.02 3.07 16 41 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.08 4.35 5.89 -2.39 -0.01 4.34 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.02 0.85 7.61 -2.39 -0.02 0.83 16 45 H 0.02 0.76 6.02 -2.39 -0.01 0.74 16 46 H 0.09 2.79 6.82 -2.39 -0.02 2.77 16 47 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -79.27 371.59 0.44 -78.84 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.29 Total: 17.29 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 6.82 Total: 27.56 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -7.13 Total: -125.29 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -1.57 Total: -47.03 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -79.27 0.44 -78.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131620708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.258 kcal (2) G-P(sol) polarization free energy of solvation -79.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds