Wall clock time and date at job start Tue Mar 31 2020 06:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47349 * 2 1 4 4 C 1.52994 * 109.47423 * 120.00352 * 2 1 3 5 5 C 1.50703 * 109.47423 * 184.99999 * 4 2 1 6 6 O 1.21282 * 119.99542 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00125 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99618 * 180.02562 * 7 5 4 9 9 H 1.08995 * 110.64310 * 36.68427 * 8 7 5 10 10 C 1.54320 * 110.71953 * 273.53657 * 8 7 5 11 11 N 1.47013 * 107.27770 * 219.44651 * 10 8 7 12 12 C 1.36941 * 125.65571 * 178.97698 * 11 10 8 13 13 H 1.07996 * 119.99531 * 349.94653 * 12 11 10 14 14 C 1.38812 * 120.00272 * 169.94192 * 12 11 10 15 15 N 1.31620 * 120.00055 * 350.42823 * 14 12 11 16 16 Si 1.86799 * 119.99954 * 170.41910 * 14 12 11 17 17 H 1.48504 * 109.46674 * 94.14160 * 16 14 12 18 18 H 1.48493 * 109.47498 * 214.14374 * 16 14 12 19 19 H 1.48503 * 109.47202 * 334.14764 * 16 14 12 20 20 C 1.47432 * 108.69970 * 358.94273 * 11 10 8 21 21 C 1.54906 * 104.83211 * 24.13117 * 20 11 10 22 22 H 1.08993 * 111.00956 * 81.06308 * 21 20 11 23 23 O 1.42904 * 111.00341 * 204.91774 * 21 20 11 24 24 N 1.46501 * 109.46729 * 240.00256 * 2 1 3 25 25 C 1.46765 * 124.35095 * 119.72303 * 24 2 1 26 26 C 1.54471 * 105.47688 * 163.24487 * 25 24 2 27 27 C 1.54634 * 101.76477 * 25.42181 * 26 25 24 28 28 C 1.34420 * 124.34932 * 300.02389 * 24 2 1 29 29 O 1.21273 * 124.94387 * 0.16045 * 28 24 2 30 30 H 1.09000 * 109.47018 * 299.99657 * 1 2 3 31 31 H 1.09000 * 109.47704 * 59.99451 * 1 2 3 32 32 H 1.09008 * 109.47339 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47077 * 304.99854 * 4 2 1 34 34 H 1.09004 * 109.47604 * 64.99746 * 4 2 1 35 35 H 0.96996 * 120.00403 * 359.97438 * 7 5 4 36 36 H 1.09004 * 109.88160 * 338.86976 * 10 8 7 37 37 H 1.09007 * 109.87817 * 100.02622 * 10 8 7 38 38 H 0.97000 * 120.00040 * 180.02562 * 15 14 12 39 39 H 1.09000 * 110.36328 * 142.96432 * 20 11 10 40 40 H 1.08995 * 110.36743 * 265.17972 * 20 11 10 41 41 H 0.96693 * 113.99877 * 292.19494 * 23 21 20 42 42 H 1.08997 * 110.24582 * 282.25314 * 25 24 2 43 43 H 1.09009 * 110.24158 * 44.24400 * 25 24 2 44 44 H 1.09004 * 110.97682 * 267.30070 * 26 25 24 45 45 H 1.08998 * 111.00354 * 143.54988 * 26 25 24 46 46 H 1.09002 * 110.48412 * 216.52489 * 27 26 25 47 47 H 1.08996 * 110.60241 * 93.92846 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.6149 1.3126 6 8 4.1450 -0.0211 0.4439 7 7 4.2150 -1.1806 2.3341 8 6 5.6750 -1.0767 2.3960 9 1 6.0066 -0.1029 2.0356 10 6 6.3380 -2.2125 1.5886 11 7 7.5101 -2.6644 2.3522 12 6 8.3599 -3.6742 1.9870 13 1 8.1077 -4.3187 1.1579 14 6 9.5454 -3.8694 2.6823 15 7 9.9453 -2.9782 3.5645 16 14 10.5729 -5.3971 2.3662 17 1 11.6116 -5.0931 1.3494 18 1 11.2265 -5.8241 3.6293 19 1 9.6973 -6.4883 1.8683 20 6 7.6198 -1.8496 3.5760 21 6 6.1829 -1.3342 3.8394 22 1 5.5800 -2.0944 4.3359 23 8 6.2041 -0.1237 4.5985 24 7 2.0182 -0.6906 -1.1962 25 6 2.8606 -0.0695 -2.2251 26 6 3.4648 -1.2434 -3.0270 27 6 2.4145 -2.3551 -2.7983 28 6 1.7474 -1.9728 -1.4954 29 8 1.0671 -2.7150 -0.8194 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7716 1.2055 35 1 3.7327 -1.6558 3.0286 36 1 5.6362 -3.0372 1.4641 37 1 6.6518 -1.8398 0.6135 38 1 10.7739 -3.1145 4.0501 39 1 7.9618 -2.4623 4.4102 40 1 8.3010 -1.0140 3.4156 41 1 6.5147 -0.2348 5.5074 42 1 2.2564 0.5613 -2.8771 43 1 3.6530 0.5171 -1.7602 44 1 4.4346 -1.5339 -2.6228 45 1 3.5445 -0.9938 -4.0850 46 1 2.9008 -3.3264 -2.7073 47 1 1.6870 -2.3682 -3.6099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197751938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:35 Heat of formation + Delta-G solvation = -90.754161 kcal Electronic energy + Delta-G solvation = -29124.180619 eV Core-core repulsion = 25114.706151 eV Total energy + Delta-G solvation = -4009.474468 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72497 -39.47080 -37.84314 -36.34006 -35.15345 -34.89805 -33.98002 -31.77621 -30.25261 -28.87736 -27.87876 -27.52035 -26.73625 -24.40609 -22.79802 -21.97729 -20.90690 -20.52058 -19.92873 -18.80143 -17.32097 -17.06165 -16.90324 -16.68195 -16.34376 -15.82057 -15.19472 -14.82824 -14.65967 -14.13585 -14.00099 -13.85939 -13.72055 -13.59471 -13.33491 -12.98039 -12.91893 -12.82641 -12.41501 -12.16832 -12.05995 -12.00323 -11.78146 -11.58247 -11.52744 -11.26449 -11.23415 -11.03767 -10.96160 -10.85161 -10.19631 -9.96205 -9.84761 -9.72300 -9.61882 -9.29816 -8.75048 -8.71349 -8.67160 -6.90071 -5.81948 -3.15953 2.58573 2.84173 2.98164 3.33339 3.36795 3.42291 3.44687 4.29421 4.38465 4.47815 4.57268 4.66192 4.73701 4.81043 4.95717 5.07169 5.17364 5.26628 5.33772 5.38697 5.42249 5.45928 5.54557 5.55464 5.57890 5.63838 5.74722 5.76428 5.81212 5.83270 5.99668 6.02339 6.06464 6.15591 6.49626 6.57541 6.66921 6.92478 7.15793 7.23793 7.43093 7.66969 7.73407 8.04106 8.16419 8.18823 8.44702 9.10143 9.71799 10.36941 11.30896 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.003442 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.905712 B = 8133.596945 C = 9336.119287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.174 3.826 3 H 0.095 0.905 4 C -0.162 4.162 5 C 0.516 3.484 6 O -0.539 6.539 7 N -0.717 5.717 8 C 0.145 3.855 9 H 0.099 0.901 10 C 0.132 3.868 11 N -0.599 5.599 12 C -0.231 4.231 13 H 0.078 0.922 14 C -0.006 4.006 15 N -0.919 5.919 16 Si 0.913 3.087 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.151 3.849 21 C 0.066 3.934 22 H 0.061 0.939 23 O -0.565 6.565 24 N -0.601 5.601 25 C 0.104 3.896 26 C -0.131 4.131 27 C -0.157 4.157 28 C 0.517 3.483 29 O -0.540 6.540 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.397 0.603 36 H 0.028 0.972 37 H 0.032 0.968 38 H 0.254 0.746 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.377 0.623 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.778 7.149 -6.410 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.071 3.929 3 H 0.114 0.886 4 C -0.203 4.203 5 C 0.302 3.698 6 O -0.416 6.416 7 N -0.367 5.367 8 C 0.041 3.959 9 H 0.117 0.883 10 C 0.005 3.995 11 N -0.327 5.327 12 C -0.359 4.359 13 H 0.096 0.904 14 C -0.202 4.202 15 N -0.566 5.566 16 Si 0.743 3.257 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.205 1.205 20 C 0.025 3.975 21 C 0.005 3.995 22 H 0.079 0.921 23 O -0.369 6.369 24 N -0.334 5.334 25 C -0.018 4.018 26 C -0.169 4.169 27 C -0.197 4.197 28 C 0.305 3.695 29 O -0.418 6.418 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.231 0.769 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.117 0.883 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.741 7.413 -7.116 20.502 hybrid contribution 0.721 -1.239 0.761 1.623 sum -17.020 6.174 -6.355 19.188 Atomic orbital electron populations 1.22185 0.94367 1.03736 1.02208 1.20625 0.93548 0.96314 0.82411 0.88649 1.22185 0.93079 1.05062 0.99954 1.20486 0.89596 0.78272 0.81397 1.90627 1.70341 1.42626 1.38019 1.46011 1.07711 1.56439 1.26545 1.21940 0.78323 1.00704 0.94973 0.88314 1.21615 0.89951 0.93329 0.94622 1.44277 1.28813 1.39236 1.20335 1.19040 0.98117 1.04580 1.14153 0.90400 1.24840 0.96965 0.98751 0.99672 1.69934 1.23277 1.34127 1.29243 0.86095 0.80099 0.82358 0.77170 1.21477 1.21543 1.20512 1.21995 0.89431 0.94913 0.91160 1.23607 0.99949 0.85564 0.90352 0.92119 1.86422 1.89460 1.32902 1.28152 1.48204 1.50855 1.11951 1.22407 1.22122 0.94455 0.96037 0.89228 1.22573 0.99078 0.94285 1.00958 1.22329 0.99478 1.01209 0.96661 1.20897 0.79904 0.81590 0.87144 1.90666 1.40288 1.54858 1.55954 0.91343 0.92214 0.90873 0.88047 0.87448 0.76902 0.95392 0.94985 0.93579 0.90753 0.94218 0.77619 0.91899 0.88674 0.89657 0.89545 0.88265 0.88253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.19 37.16 0.34 -1.16 16 2 C 0.17 1.86 2.43 -67.93 -0.16 1.70 16 3 H 0.10 0.99 7.88 -51.93 -0.41 0.58 16 4 C -0.16 -1.84 5.13 -27.88 -0.14 -1.99 16 5 C 0.52 7.66 7.69 -10.99 -0.08 7.57 16 6 O -0.54 -9.31 13.35 5.56 0.07 -9.24 16 7 N -0.72 -10.85 5.13 -52.03 -0.27 -11.12 16 8 C 0.15 2.73 2.97 -66.09 -0.20 2.53 16 9 H 0.10 2.06 7.69 -51.93 -0.40 1.66 16 10 C 0.13 2.89 6.99 -3.07 -0.02 2.87 16 11 N -0.60 -15.34 3.39 -170.08 -0.58 -15.92 16 12 C -0.23 -6.44 10.24 -15.06 -0.15 -6.59 16 13 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 14 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 15 N -0.92 -26.54 10.68 55.49 0.59 -25.94 16 16 Si 0.91 21.85 29.56 -169.99 -5.03 16.83 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.15 3.57 5.16 -2.53 -0.01 3.56 16 21 C 0.07 1.21 4.04 -24.58 -0.10 1.11 16 22 H 0.06 1.03 8.00 -51.93 -0.42 0.62 16 23 O -0.56 -9.48 13.47 -35.23 -0.47 -9.95 16 24 N -0.60 -7.00 2.20 -164.85 -0.36 -7.37 16 25 C 0.10 1.04 6.86 -3.13 -0.02 1.02 16 26 C -0.13 -1.20 7.18 -25.10 -0.18 -1.38 16 27 C -0.16 -1.57 6.86 -26.74 -0.18 -1.75 16 28 C 0.52 6.80 7.39 -10.86 -0.08 6.72 16 29 O -0.54 -8.68 15.07 5.56 0.08 -8.60 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.80 6.78 -51.92 -0.35 0.45 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.11 1.37 6.64 -51.93 -0.34 1.02 16 35 H 0.40 5.05 8.52 -40.82 -0.35 4.70 16 36 H 0.03 0.61 8.03 -51.93 -0.42 0.20 16 37 H 0.03 0.75 8.14 -51.92 -0.42 0.32 16 38 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.07 1.90 6.94 -51.93 -0.36 1.54 16 40 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16 41 H 0.38 4.76 9.12 45.56 0.42 5.17 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 1.12 6.73 -51.92 -0.35 0.77 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -34.32 375.54 -8.14 -42.46 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -6.75 Total: 9.23 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -1.09 Total: 13.96 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.61 Total: -60.35 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.32 Total: -27.79 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.32 -8.14 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197751938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.294 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds