Wall clock time and date at job start Tue Mar 31 2020 06:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47349 * 2 1 4 4 C 1.52994 * 109.47423 * 120.00352 * 2 1 3 5 5 C 1.50703 * 109.47423 * 184.99999 * 4 2 1 6 6 O 1.21282 * 119.99542 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00125 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99618 * 180.02562 * 7 5 4 9 9 H 1.08995 * 110.64310 * 36.68427 * 8 7 5 10 10 C 1.54320 * 110.71953 * 273.53657 * 8 7 5 11 11 N 1.47013 * 107.27770 * 219.44651 * 10 8 7 12 12 C 1.36941 * 125.65571 * 178.97698 * 11 10 8 13 13 H 1.07996 * 119.99531 * 349.94653 * 12 11 10 14 14 C 1.38812 * 120.00272 * 169.94192 * 12 11 10 15 15 N 1.31620 * 120.00055 * 350.42823 * 14 12 11 16 16 Si 1.86799 * 119.99954 * 170.41910 * 14 12 11 17 17 H 1.48504 * 109.46674 * 94.14160 * 16 14 12 18 18 H 1.48493 * 109.47498 * 214.14374 * 16 14 12 19 19 H 1.48503 * 109.47202 * 334.14764 * 16 14 12 20 20 C 1.47432 * 108.69970 * 358.94273 * 11 10 8 21 21 C 1.54906 * 104.83211 * 24.13117 * 20 11 10 22 22 H 1.08993 * 111.00956 * 81.06308 * 21 20 11 23 23 O 1.42904 * 111.00341 * 204.91774 * 21 20 11 24 24 N 1.46501 * 109.46729 * 240.00256 * 2 1 3 25 25 C 1.46765 * 124.35095 * 119.72303 * 24 2 1 26 26 C 1.54471 * 105.47688 * 163.24487 * 25 24 2 27 27 C 1.54634 * 101.76477 * 25.42181 * 26 25 24 28 28 C 1.34420 * 124.34932 * 300.02389 * 24 2 1 29 29 O 1.21273 * 124.94387 * 0.16045 * 28 24 2 30 30 H 1.09000 * 109.47018 * 299.99657 * 1 2 3 31 31 H 1.09000 * 109.47704 * 59.99451 * 1 2 3 32 32 H 1.09008 * 109.47339 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47077 * 304.99854 * 4 2 1 34 34 H 1.09004 * 109.47604 * 64.99746 * 4 2 1 35 35 H 0.96996 * 120.00403 * 359.97438 * 7 5 4 36 36 H 1.09004 * 109.88160 * 338.86976 * 10 8 7 37 37 H 1.09007 * 109.87817 * 100.02622 * 10 8 7 38 38 H 0.97000 * 120.00040 * 180.02562 * 15 14 12 39 39 H 1.09000 * 110.36328 * 142.96432 * 20 11 10 40 40 H 1.08995 * 110.36743 * 265.17972 * 20 11 10 41 41 H 0.96693 * 113.99877 * 292.19494 * 23 21 20 42 42 H 1.08997 * 110.24582 * 282.25314 * 25 24 2 43 43 H 1.09009 * 110.24158 * 44.24400 * 25 24 2 44 44 H 1.09004 * 110.97682 * 267.30070 * 26 25 24 45 45 H 1.08998 * 111.00354 * 143.54988 * 26 25 24 46 46 H 1.09002 * 110.48412 * 216.52489 * 27 26 25 47 47 H 1.08996 * 110.60241 * 93.92846 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.6149 1.3126 6 8 4.1450 -0.0211 0.4439 7 7 4.2150 -1.1806 2.3341 8 6 5.6750 -1.0767 2.3960 9 1 6.0066 -0.1029 2.0356 10 6 6.3380 -2.2125 1.5886 11 7 7.5101 -2.6644 2.3522 12 6 8.3599 -3.6742 1.9870 13 1 8.1077 -4.3187 1.1579 14 6 9.5454 -3.8694 2.6823 15 7 9.9453 -2.9782 3.5645 16 14 10.5729 -5.3971 2.3662 17 1 11.6116 -5.0931 1.3494 18 1 11.2265 -5.8241 3.6293 19 1 9.6973 -6.4883 1.8683 20 6 7.6198 -1.8496 3.5760 21 6 6.1829 -1.3342 3.8394 22 1 5.5800 -2.0944 4.3359 23 8 6.2041 -0.1237 4.5985 24 7 2.0182 -0.6906 -1.1962 25 6 2.8606 -0.0695 -2.2251 26 6 3.4648 -1.2434 -3.0270 27 6 2.4145 -2.3551 -2.7983 28 6 1.7474 -1.9728 -1.4954 29 8 1.0671 -2.7150 -0.8194 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7716 1.2055 35 1 3.7327 -1.6558 3.0286 36 1 5.6362 -3.0372 1.4641 37 1 6.6518 -1.8398 0.6135 38 1 10.7739 -3.1145 4.0501 39 1 7.9618 -2.4623 4.4102 40 1 8.3010 -1.0140 3.4156 41 1 6.5147 -0.2348 5.5074 42 1 2.2564 0.5613 -2.8771 43 1 3.6530 0.5171 -1.7602 44 1 4.4346 -1.5339 -2.6228 45 1 3.5445 -0.9938 -4.0850 46 1 2.9008 -3.3264 -2.7073 47 1 1.6870 -2.3682 -3.6099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197751938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:34 Heat of formation + Delta-G solvation = -117.211244 kcal Electronic energy + Delta-G solvation = -29125.327884 eV Core-core repulsion = 25114.706151 eV Total energy + Delta-G solvation = -4010.621733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70758 -40.77138 -39.35852 -37.33864 -36.72128 -35.84469 -35.46821 -33.66964 -31.23384 -30.33621 -29.31708 -28.36832 -28.26421 -26.27480 -23.73765 -22.77834 -22.59072 -21.99818 -21.42022 -19.76594 -19.08883 -18.53135 -17.98075 -17.80279 -17.35713 -17.29580 -16.68991 -16.19509 -15.97534 -15.58646 -15.42254 -14.92339 -14.86899 -14.72518 -14.61572 -14.44260 -14.05605 -13.91529 -13.77452 -13.64291 -13.25639 -13.15367 -12.98175 -12.87369 -12.75942 -12.73882 -12.64625 -12.40229 -12.11913 -12.06728 -11.93895 -11.83301 -11.55564 -11.14151 -10.79708 -10.70854 -10.59109 -10.14414 -9.61012 -8.98226 -7.94766 -5.32478 1.45320 1.46141 1.56389 1.61551 1.65436 2.07361 2.15306 2.45097 3.03011 3.25380 3.45557 3.57097 3.64955 3.68853 3.81312 3.88083 4.01036 4.06180 4.14903 4.16562 4.27021 4.35923 4.41312 4.52882 4.56353 4.68071 4.70444 4.75269 4.79874 4.82473 4.90691 4.98977 5.00293 5.05116 5.24226 5.27555 5.29034 5.40125 5.46888 5.57923 5.72270 6.09478 6.25958 6.53465 6.82472 6.99293 7.22906 7.25881 7.63924 8.28827 9.16409 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.014781 B = 0.003442 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.905712 B = 8133.596945 C = 9336.119287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.165 3.835 3 H 0.101 0.899 4 C -0.151 4.151 5 C 0.511 3.489 6 O -0.565 6.565 7 N -0.709 5.709 8 C 0.162 3.838 9 H 0.077 0.923 10 C 0.135 3.865 11 N -0.618 5.618 12 C -0.253 4.253 13 H 0.078 0.922 14 C -0.055 4.055 15 N -0.945 5.945 16 Si 0.981 3.019 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.269 1.269 20 C 0.157 3.843 21 C 0.092 3.908 22 H 0.087 0.913 23 O -0.565 6.565 24 N -0.602 5.602 25 C 0.102 3.898 26 C -0.124 4.124 27 C -0.153 4.153 28 C 0.503 3.497 29 O -0.577 6.577 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.136 0.864 34 H 0.097 0.903 35 H 0.412 0.588 36 H 0.032 0.968 37 H 0.011 0.989 38 H 0.252 0.748 39 H 0.052 0.948 40 H 0.003 0.997 41 H 0.397 0.603 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.118 0.882 46 H 0.092 0.908 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.558 7.395 -6.651 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.063 3.937 3 H 0.119 0.881 4 C -0.191 4.191 5 C 0.300 3.700 6 O -0.444 6.444 7 N -0.361 5.361 8 C 0.056 3.944 9 H 0.096 0.904 10 C 0.009 3.991 11 N -0.345 5.345 12 C -0.382 4.382 13 H 0.095 0.905 14 C -0.249 4.249 15 N -0.593 5.593 16 Si 0.808 3.192 17 H -0.213 1.213 18 H -0.214 1.214 19 H -0.194 1.194 20 C 0.031 3.969 21 C 0.031 3.969 22 H 0.105 0.895 23 O -0.373 6.373 24 N -0.334 5.334 25 C -0.020 4.020 26 C -0.162 4.162 27 C -0.193 4.193 28 C 0.292 3.708 29 O -0.458 6.458 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.115 0.885 35 H 0.249 0.751 36 H 0.050 0.950 37 H 0.030 0.970 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.021 0.979 41 H 0.248 0.752 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.136 0.864 46 H 0.111 0.889 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.549 7.684 -7.344 22.251 hybrid contribution 1.304 -1.240 0.812 1.974 sum -18.245 6.445 -6.532 20.423 Atomic orbital electron populations 1.22091 0.92707 1.02776 1.03791 1.20839 0.94795 0.96300 0.81815 0.88078 1.22184 0.90062 1.04878 1.01993 1.21175 0.91033 0.77311 0.80526 1.90629 1.71210 1.43664 1.38859 1.45860 1.05958 1.56847 1.27429 1.21437 0.80422 0.98109 0.94474 0.90440 1.21636 0.89105 0.94403 0.93989 1.44544 1.29329 1.39089 1.21582 1.19382 0.98965 1.05417 1.14395 0.90456 1.25673 0.98090 1.01588 0.99593 1.70121 1.23489 1.35657 1.29985 0.85054 0.78323 0.78958 0.76882 1.21324 1.21368 1.19383 1.21823 0.92274 0.93057 0.89755 1.23203 0.96435 0.86560 0.90699 0.89498 1.86392 1.89342 1.31887 1.29662 1.48395 1.50388 1.11769 1.22873 1.22230 0.94238 0.96322 0.89190 1.22566 0.97434 0.93619 1.02599 1.22370 0.99931 1.01015 0.95983 1.21432 0.79675 0.81796 0.87910 1.90637 1.42064 1.55808 1.57283 0.89015 0.91430 0.92953 0.84615 0.88496 0.75099 0.95018 0.97047 0.93896 0.92999 0.97864 0.75232 0.88956 0.90709 0.92147 0.86357 0.88903 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.19 71.98 0.66 -1.79 16 2 C 0.17 3.25 2.43 44.99 0.11 3.36 16 3 H 0.10 1.89 7.88 -2.39 -0.02 1.87 16 4 C -0.15 -3.16 5.13 29.85 0.15 -3.00 16 5 C 0.51 14.66 7.69 87.66 0.67 15.33 16 6 O -0.56 -19.47 13.35 -3.03 -0.04 -19.51 16 7 N -0.71 -20.56 5.13 -436.91 -2.24 -22.80 16 8 C 0.16 6.05 2.97 46.18 0.14 6.19 16 9 H 0.08 3.27 7.69 -2.39 -0.02 3.25 16 10 C 0.14 6.06 6.99 86.73 0.61 6.67 16 11 N -0.62 -32.45 3.39 -692.00 -2.35 -34.80 16 12 C -0.25 -14.40 10.24 84.03 0.86 -13.54 16 13 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 14 C -0.06 -3.13 5.40 84.86 0.46 -2.67 16 15 N -0.94 -55.82 10.68 21.65 0.23 -55.59 16 16 Si 0.98 45.29 29.56 68.60 2.03 47.32 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.16 7.60 5.16 86.85 0.45 8.05 16 21 C 0.09 3.31 4.04 31.99 0.13 3.43 16 22 H 0.09 2.75 8.00 -2.39 -0.02 2.73 16 23 O -0.57 -18.05 13.47 -148.98 -2.01 -20.06 16 24 N -0.60 -13.39 2.20 -794.06 -1.75 -15.13 16 25 C 0.10 1.91 6.86 86.83 0.60 2.51 16 26 C -0.12 -2.14 7.18 31.65 0.23 -1.91 16 27 C -0.15 -2.90 6.86 30.59 0.21 -2.69 16 28 C 0.50 12.93 7.39 87.90 0.65 13.58 16 29 O -0.58 -18.53 15.07 -3.01 -0.05 -18.57 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 1.08 6.78 -2.38 -0.02 1.06 16 33 H 0.14 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.10 2.35 6.64 -2.38 -0.02 2.33 16 35 H 0.41 9.52 8.52 -92.71 -0.79 8.73 16 36 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 37 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.05 2.72 6.94 -2.39 -0.02 2.70 16 40 H 0.00 0.18 8.07 -2.39 -0.02 0.16 16 41 H 0.40 9.23 9.12 -74.06 -0.68 8.55 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.74 6.73 -2.38 -0.02 1.72 16 44 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -76.92 375.54 -0.72 -77.64 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -0.47 Total: 27.99 kcal Atomic # 6 Polarization: 27.60 SS G_CDS: 5.92 Total: 33.52 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -6.10 Total: -128.33 kcal Atomic # 8 Polarization: -56.05 SS G_CDS: -2.09 Total: -58.14 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -76.92 -0.72 -77.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197751938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.567 kcal (2) G-P(sol) polarization free energy of solvation -76.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds