Wall clock time and date at job start Tue Mar 31 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.65107 * 2 1 4 4 C 1.54941 * 110.72252 * 236.65222 * 2 1 3 5 5 N 1.48533 * 103.22923 * 204.23187 * 4 2 1 6 6 C 1.46900 * 111.00367 * 159.71923 * 5 4 2 7 7 C 1.50705 * 109.46853 * 59.24187 * 6 5 4 8 8 O 1.21293 * 119.99863 * 6.13451 * 7 6 5 9 9 N 1.34775 * 119.99629 * 186.13808 * 7 6 5 10 10 C 1.37101 * 119.99532 * 179.97438 * 9 7 6 11 11 H 1.07993 * 120.00472 * 359.97438 * 10 9 7 12 12 C 1.38948 * 119.99728 * 179.97438 * 10 9 7 13 13 N 1.31412 * 120.00330 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99952 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46850 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47376 * 300.00289 * 14 12 10 17 17 H 1.48500 * 109.46632 * 60.00257 * 14 12 10 18 18 C 1.47903 * 105.82102 * 39.20417 * 5 4 2 19 19 C 1.53997 * 107.05956 * 334.67337 * 18 5 4 20 20 H 1.08996 * 110.30972 * 120.13543 * 19 18 5 21 21 N 1.46502 * 110.30707 * 242.30828 * 19 18 5 22 22 C 1.34774 * 119.99820 * 273.54239 * 21 19 18 23 23 O 1.21274 * 120.00203 * 0.02562 * 22 21 19 24 24 C 1.50704 * 119.99792 * 180.02562 * 22 21 19 25 25 H 1.08999 * 109.82432 * 55.56073 * 24 22 21 26 26 C 1.54389 * 109.82794 * 294.58629 * 24 22 21 27 27 C 1.55308 * 102.25075 * 219.12864 * 26 24 22 28 28 C 1.54945 * 100.94062 * 34.13734 * 27 26 24 29 29 O 1.43238 * 109.83001 * 176.45452 * 24 22 21 30 30 H 1.09007 * 109.46457 * 296.85092 * 1 2 3 31 31 H 1.09004 * 109.46974 * 56.84798 * 1 2 3 32 32 H 1.08996 * 109.47429 * 176.84909 * 1 2 3 33 33 H 1.08992 * 110.66462 * 85.79548 * 4 2 1 34 34 H 1.09004 * 110.66439 * 322.66418 * 4 2 1 35 35 H 1.08998 * 109.46994 * 299.24357 * 6 5 4 36 36 H 1.08997 * 109.47325 * 179.23710 * 6 5 4 37 37 H 0.96994 * 120.00278 * 359.97438 * 9 7 6 38 38 H 0.97001 * 119.99796 * 359.97438 * 13 12 10 39 39 H 1.08997 * 109.92085 * 94.02501 * 18 5 4 40 40 H 1.09000 * 109.91960 * 215.12275 * 18 5 4 41 41 H 0.96998 * 119.99862 * 93.54751 * 21 19 18 42 42 H 1.08995 * 110.84652 * 337.32399 * 26 24 22 43 43 H 1.09003 * 110.84750 * 100.94211 * 26 24 22 44 44 H 1.09000 * 111.12362 * 276.21358 * 27 26 24 45 45 H 1.09001 * 111.15990 * 152.06883 * 27 26 24 46 46 H 1.09001 * 110.30578 * 204.63905 * 28 27 26 47 47 H 1.09003 * 110.39811 * 82.51099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0782 -0.7966 -1.2106 5 7 3.4317 -1.2107 -0.7602 6 6 3.9210 -2.3526 -1.5441 7 6 3.9748 -1.9749 -3.0020 8 8 3.7461 -0.8331 -3.3415 9 7 4.2770 -2.9059 -3.9285 10 6 4.3254 -2.5623 -5.2549 11 1 4.1211 -1.5460 -5.5574 12 6 4.6375 -3.5220 -6.2101 13 7 4.8857 -4.7589 -5.8423 14 14 4.7028 -3.0541 -8.0175 15 1 5.0543 -4.2493 -8.8257 16 1 3.3762 -2.5412 -8.4443 17 1 5.7293 -2.0002 -8.2191 18 6 3.2893 -1.5699 0.6675 19 6 2.0770 -0.7908 1.2106 20 1 1.3207 -1.4807 1.5848 21 7 2.4972 0.1288 2.2708 22 6 2.5788 -0.3036 3.5447 23 8 2.3050 -1.4541 3.8132 24 6 3.0105 0.6425 4.6354 25 1 2.3655 1.5212 4.6392 26 6 4.4772 1.0682 4.4092 27 6 5.0422 1.0851 5.8557 28 6 4.2504 -0.0836 6.4944 29 8 2.9419 -0.0163 5.9054 30 1 -0.3632 0.4642 0.9170 31 1 -0.3633 0.5620 -0.8604 32 1 -0.3634 -1.0260 -0.0565 33 1 2.1444 -0.1593 -2.0923 34 1 1.4559 -1.6689 -1.4108 35 1 3.2470 -3.1990 -1.4126 36 1 4.9193 -2.6266 -1.2027 37 1 4.4602 -3.8188 -3.6570 38 1 4.8514 -5.0019 -4.9038 39 1 3.1160 -2.6415 0.7653 40 1 4.1900 -1.2883 1.2129 41 1 2.7165 1.0489 2.0559 42 1 5.0031 0.3369 3.7957 43 1 4.5284 2.0606 3.9612 44 1 4.8196 2.0289 6.3535 45 1 6.1134 0.8835 5.8621 46 1 4.1863 0.0485 7.5745 47 1 4.7231 -1.0369 6.2579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205822051.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:02 Heat of formation + Delta-G solvation = -109.386951 kcal Electronic energy + Delta-G solvation = -28032.017696 eV Core-core repulsion = 24021.735250 eV Total energy + Delta-G solvation = -4010.282446 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76514 -39.61230 -38.47304 -37.57993 -34.73350 -34.10524 -32.93327 -32.39471 -31.08941 -30.41158 -28.72012 -27.07706 -25.39633 -24.24564 -23.41678 -22.21651 -21.50725 -20.54490 -20.11765 -19.56672 -17.91896 -17.85024 -17.30408 -16.64246 -16.25872 -16.01443 -15.39929 -15.13967 -14.81813 -14.77198 -14.35521 -14.11425 -13.83886 -13.72549 -13.52919 -13.35592 -13.16868 -12.73285 -12.53826 -12.33350 -12.28685 -12.12435 -11.83181 -11.73558 -11.47530 -11.45765 -11.29534 -11.22758 -10.95144 -10.80749 -10.66137 -10.53797 -10.21582 -9.86701 -9.55917 -9.52180 -9.25787 -8.49332 -8.10725 -8.00950 -6.76275 -3.89574 2.37559 2.73782 3.29911 3.33889 3.52267 3.54284 3.82689 3.94528 3.98802 4.28417 4.30077 4.34944 4.47642 4.59195 4.64707 4.69675 4.82807 4.91386 5.05678 5.17921 5.19378 5.24101 5.29205 5.31694 5.36034 5.37228 5.39692 5.57062 5.61049 5.67512 5.72582 5.76623 5.82075 5.85391 5.99324 6.02127 6.14530 6.36764 6.42770 6.50211 7.06791 7.13002 7.30519 7.79312 8.02601 8.06920 8.59004 8.78886 9.46414 9.86668 10.67065 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.002280 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.130727 B =12275.579340 C =12768.349297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.045 3.955 5 N -0.491 5.491 6 C 0.036 3.964 7 C 0.446 3.554 8 O -0.573 6.573 9 N -0.575 5.575 10 C -0.381 4.381 11 H 0.099 0.901 12 C -0.010 4.010 13 N -0.901 5.901 14 Si 1.091 2.909 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.025 3.975 19 C 0.141 3.859 20 H 0.095 0.905 21 N -0.716 5.716 22 C 0.499 3.501 23 O -0.523 6.523 24 C 0.065 3.935 25 H 0.106 0.894 26 C -0.147 4.147 27 C -0.155 4.155 28 C 0.047 3.953 29 O -0.353 6.353 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.041 0.959 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.375 0.625 38 H 0.261 0.739 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.401 0.599 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.028 11.392 21.762 24.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.083 4.083 5 N -0.215 5.215 6 C -0.096 4.096 7 C 0.232 3.768 8 O -0.456 6.456 9 N -0.213 5.213 10 C -0.511 4.511 11 H 0.117 0.883 12 C -0.212 4.212 13 N -0.540 5.540 14 Si 0.917 3.083 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.105 4.105 19 C 0.036 3.964 20 H 0.113 0.887 21 N -0.369 5.369 22 C 0.284 3.716 23 O -0.398 6.398 24 C 0.004 3.996 25 H 0.124 0.876 26 C -0.185 4.185 27 C -0.192 4.192 28 C -0.029 4.029 29 O -0.271 6.271 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.208 0.792 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.236 0.764 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.897 11.032 20.210 23.207 hybrid contribution -0.310 -0.269 1.674 1.723 sum -3.207 10.763 21.884 24.598 Atomic orbital electron populations 1.21771 0.94038 1.02259 1.01951 1.22401 0.95846 1.00095 0.93691 0.89316 1.23406 0.87789 0.98936 0.98177 1.64562 1.24105 1.32426 1.00440 1.22096 1.01267 0.92105 0.94131 1.19601 0.84619 0.86417 0.86188 1.90483 1.54054 1.19739 1.81374 1.41945 1.62195 1.10143 1.07054 1.20517 1.48878 0.99714 0.81963 0.88308 1.26519 0.95216 0.92833 1.06673 1.70900 1.46242 1.18051 1.18777 0.83132 0.77008 0.75593 0.72533 1.20418 1.21023 1.20988 1.23341 0.98383 0.98397 0.90334 1.21933 0.95994 0.91696 0.86812 0.88735 1.46067 1.69407 1.14816 1.06642 1.21031 0.77725 0.89263 0.83574 1.90721 1.47756 1.18838 1.82488 1.22648 0.98390 0.94134 0.84431 0.87602 1.23135 0.93288 1.03565 0.98488 1.23280 1.01303 0.99733 0.94901 1.23489 0.83011 0.98076 0.98370 1.88524 1.28585 1.79697 1.30254 0.92551 0.91819 0.92464 0.87138 0.94073 0.93435 0.89240 0.79165 0.92748 0.93283 0.90217 0.76381 0.89699 0.88772 0.89916 0.89361 0.89173 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.16 37.16 0.34 -1.10 16 2 C -0.10 -1.18 3.37 -88.75 -0.30 -1.48 16 3 H 0.09 0.96 7.74 -51.93 -0.40 0.56 16 4 C 0.04 0.70 5.03 -1.90 -0.01 0.70 16 5 N -0.49 -8.14 5.11 -231.89 -1.18 -9.32 16 6 C 0.04 0.65 5.31 -4.97 -0.03 0.62 16 7 C 0.45 10.48 7.42 -10.98 -0.08 10.39 16 8 O -0.57 -15.19 13.87 5.55 0.08 -15.11 16 9 N -0.58 -14.49 5.28 -10.96 -0.06 -14.54 16 10 C -0.38 -10.67 9.68 -14.93 -0.14 -10.82 16 11 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 12 C -0.01 -0.27 5.50 -17.47 -0.10 -0.37 16 13 N -0.90 -25.31 13.68 55.50 0.76 -24.55 16 14 Si 1.09 24.20 29.92 -169.99 -5.09 19.12 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 C 0.02 0.34 6.49 -2.75 -0.02 0.33 16 19 C 0.14 1.69 2.87 -66.57 -0.19 1.49 16 20 H 0.09 1.25 7.36 -51.93 -0.38 0.87 16 21 N -0.72 -7.02 5.01 -52.49 -0.26 -7.28 16 22 C 0.50 5.81 7.02 -10.98 -0.08 5.73 16 23 O -0.52 -8.53 16.22 -14.09 -0.23 -8.75 16 24 C 0.07 0.57 3.95 -27.15 -0.11 0.46 16 25 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 26 C -0.15 -0.91 6.52 -24.78 -0.16 -1.07 16 27 C -0.15 -0.83 7.16 -24.48 -0.18 -1.00 16 28 C 0.05 0.36 7.78 38.18 0.30 0.66 16 29 O -0.35 -3.92 10.56 -54.88 -0.58 -4.50 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.11 2.08 6.43 -51.93 -0.33 1.75 16 34 H 0.04 0.66 7.88 -51.93 -0.41 0.25 16 35 H 0.05 0.80 7.98 -51.93 -0.41 0.38 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.38 8.80 6.73 -40.82 -0.27 8.52 16 38 H 0.26 7.07 6.78 -40.82 -0.28 6.79 16 39 H 0.05 0.69 7.68 -51.93 -0.40 0.30 16 40 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 41 H 0.40 2.87 8.34 -40.82 -0.34 2.53 16 42 H 0.08 0.62 7.84 -51.93 -0.41 0.21 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -35.47 379.45 -9.04 -44.51 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -7.45 Total: 10.17 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.75 Total: 4.55 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.75 Total: -55.70 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.73 Total: -28.37 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.09 Total: 19.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.47 -9.04 -44.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205822051.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.875 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds