Wall clock time and date at job start Tue Mar 31 2020 06:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46951 * 2 1 4 4 O 1.21283 * 120.00249 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00171 * 180.02562 * 3 2 1 6 6 C 1.46491 * 120.00221 * 180.02562 * 5 3 2 7 7 H 1.09003 * 109.47532 * 35.00030 * 6 5 3 8 8 C 1.53007 * 109.47151 * 275.00016 * 6 5 3 9 9 C 1.50703 * 109.47120 * 155.00201 * 6 5 3 10 10 O 1.21276 * 120.00039 * 2.37964 * 9 6 5 11 11 N 1.34783 * 119.99907 * 182.38295 * 9 6 5 12 12 C 1.44953 * 117.31850 * 192.63317 * 11 9 6 13 13 C 1.51979 * 111.88468 * 203.66357 * 12 11 9 14 14 O 1.41322 * 111.52908 * 319.32581 * 13 12 11 15 15 C 1.40787 * 118.39423 * 56.96091 * 14 13 12 16 16 H 1.08995 * 109.66275 * 188.46060 * 15 14 13 17 17 C 1.54201 * 110.21779 * 67.65502 * 15 14 13 18 18 N 1.46875 * 106.39802 * 210.34205 * 17 15 14 19 19 C 1.36929 * 125.37009 * 197.81827 * 18 17 15 20 20 H 1.07998 * 120.00156 * 179.47975 * 19 18 17 21 21 C 1.38813 * 119.99694 * 359.47389 * 19 18 17 22 22 N 1.31622 * 120.00340 * 325.27611 * 21 19 18 23 23 Si 1.86802 * 119.99848 * 145.27277 * 21 19 18 24 24 H 1.48507 * 109.47076 * 269.99985 * 23 21 19 25 25 H 1.48494 * 109.47227 * 30.00151 * 23 21 19 26 26 H 1.48505 * 109.47037 * 150.00255 * 23 21 19 27 27 C 1.46784 * 109.26673 * 18.08035 * 18 17 15 28 28 C 1.44538 * 117.32372 * 12.62808 * 11 9 6 29 29 H 1.09004 * 109.49045 * 287.01173 * 28 11 9 30 30 H 1.08997 * 109.47285 * 59.99743 * 1 2 3 31 31 H 1.09003 * 109.46722 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46899 * 299.99941 * 1 2 3 33 33 H 1.09002 * 109.47064 * 240.00805 * 2 1 3 34 34 H 1.08997 * 109.47285 * 120.00257 * 2 1 3 35 35 H 0.97001 * 119.99612 * 359.97438 * 5 3 2 36 36 H 1.08998 * 109.47061 * 305.07300 * 8 6 5 37 37 H 1.08994 * 109.47074 * 65.07913 * 8 6 5 38 38 H 1.09000 * 109.46906 * 185.07357 * 8 6 5 39 39 H 1.08994 * 109.00267 * 83.04110 * 12 11 9 40 40 H 1.09002 * 108.99943 * 324.27866 * 12 11 9 41 41 H 1.09002 * 109.06753 * 198.80517 * 13 12 11 42 42 H 1.08999 * 109.07362 * 79.85440 * 13 12 11 43 43 H 1.09001 * 110.06860 * 91.11143 * 17 15 14 44 44 H 1.08994 * 110.12027 * 329.60483 * 17 15 14 45 45 H 0.96996 * 119.99391 * 354.58600 * 22 21 19 46 46 H 1.09000 * 109.82918 * 118.16275 * 27 18 17 47 47 H 1.09000 * 109.83266 * 239.12704 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8457 3.0483 0.0000 7 1 3.1734 3.6712 0.5902 8 6 3.8964 3.5720 -1.4367 9 6 5.2275 3.0924 0.5998 10 8 5.7701 2.0654 0.9488 11 7 5.8604 4.2731 0.7484 12 6 7.2749 4.2348 1.0624 13 6 7.7365 5.5073 1.7534 14 8 7.1456 6.6542 1.1766 15 6 5.7406 6.7321 1.1304 16 1 5.4405 7.5911 0.5303 17 6 5.1673 6.8693 2.5553 18 7 3.8455 6.2294 2.5338 19 6 2.8588 6.4170 3.4644 20 1 1.9128 5.9068 3.3589 21 6 3.0745 7.2630 4.5436 22 7 4.2710 7.3463 5.0858 23 14 1.6667 8.2834 5.2265 24 1 1.6200 9.5929 4.5276 25 1 0.3854 7.5634 5.0148 26 1 1.8756 8.5052 6.6799 27 6 3.7512 5.3520 1.3608 28 6 5.0729 5.4736 0.5814 29 1 4.8444 5.6146 -0.4751 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.9877 0.9299 -0.0005 36 1 4.4965 2.8980 -2.0481 37 1 2.8852 3.6251 -1.8400 38 1 4.3437 4.5659 -1.4456 39 1 7.8401 4.1073 0.1392 40 1 7.4703 3.3850 1.7166 41 1 8.8205 5.5850 1.6696 42 1 7.4645 5.4588 2.8078 43 1 5.0688 7.9224 2.8190 44 1 5.8160 6.3640 3.2707 45 1 4.9822 6.7602 4.7834 46 1 3.6020 4.3210 1.6813 47 1 2.9211 5.6677 0.7287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001217966563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:55 Heat of formation + Delta-G solvation = -51.655724 kcal Electronic energy + Delta-G solvation = -30201.187737 eV Core-core repulsion = 26193.408705 eV Total energy + Delta-G solvation = -4007.779032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41672 -39.74544 -38.64150 -36.57673 -35.06573 -35.05214 -32.99708 -32.60645 -30.98707 -29.93997 -28.26543 -27.53713 -25.61522 -24.74424 -23.58860 -23.29729 -21.15389 -20.39478 -20.01769 -18.89703 -18.14371 -17.73089 -16.95936 -16.67343 -16.07096 -15.75756 -15.57531 -15.28636 -15.21719 -14.55029 -14.35010 -14.10158 -13.77123 -13.73466 -13.56854 -13.10673 -13.02803 -12.87404 -12.61982 -12.41749 -12.32211 -12.02233 -11.88295 -11.85341 -11.52234 -11.28105 -11.14828 -10.89039 -10.79172 -10.47168 -10.29573 -10.05433 -9.89744 -9.86819 -9.79680 -9.38273 -9.09496 -8.54109 -8.39190 -7.10888 -6.23620 -3.14331 2.43372 2.59781 2.71094 3.24434 3.52102 3.53041 3.70436 3.83915 4.23687 4.50363 4.63123 4.64318 4.80396 4.92400 4.94776 4.95388 5.02916 5.07876 5.12460 5.15066 5.19257 5.40248 5.41604 5.48282 5.56078 5.59409 5.64740 5.74071 5.74204 5.80825 5.82329 5.91832 6.00062 6.10649 6.17014 6.24378 6.37469 6.53952 6.76394 6.83613 7.19599 7.46339 7.49308 7.68405 8.01291 8.21733 8.40104 8.87801 9.73021 10.20247 11.10504 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.005229 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.100818 B = 5353.833554 C = 7472.184863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 C 0.511 3.489 4 O -0.535 6.535 5 N -0.715 5.715 6 C 0.091 3.909 7 H 0.150 0.850 8 C -0.163 4.163 9 C 0.518 3.482 10 O -0.540 6.540 11 N -0.585 5.585 12 C 0.083 3.917 13 C 0.057 3.943 14 O -0.367 6.367 15 C 0.084 3.916 16 H 0.121 0.879 17 C 0.117 3.883 18 N -0.594 5.594 19 C -0.352 4.352 20 H 0.075 0.925 21 C -0.015 4.015 22 N -0.907 5.907 23 Si 1.058 2.942 24 H -0.292 1.292 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.115 3.885 28 C 0.090 3.910 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.030 0.970 45 H 0.269 0.731 46 H 0.041 0.959 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 -10.498 -13.820 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.298 3.702 4 O -0.411 6.411 5 N -0.369 5.369 6 C -0.017 4.017 7 H 0.166 0.834 8 C -0.221 4.221 9 C 0.305 3.695 10 O -0.417 6.417 11 N -0.319 5.319 12 C -0.039 4.039 13 C -0.020 4.020 14 O -0.284 6.284 15 C 0.024 3.976 16 H 0.139 0.861 17 C -0.009 4.009 18 N -0.323 5.323 19 C -0.478 4.478 20 H 0.093 0.907 21 C -0.217 4.217 22 N -0.547 5.547 23 Si 0.887 3.113 24 H -0.219 1.219 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.011 4.011 28 C -0.014 4.014 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.242 0.758 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.248 -9.017 -12.500 15.576 hybrid contribution 0.643 -1.849 -0.916 2.161 sum 2.891 -10.866 -13.416 17.505 Atomic orbital electron populations 1.21534 0.92892 1.01476 1.03565 1.21611 0.98697 0.93529 1.04358 1.20815 0.81697 0.92097 0.75585 1.90736 1.55109 1.46388 1.48872 1.45823 1.07518 1.07807 1.75745 1.21847 0.94349 0.86141 0.99320 0.83362 1.22251 1.03737 1.01942 0.94208 1.20621 0.87612 0.83444 0.77796 1.90631 1.68002 1.33424 1.49675 1.46602 1.09394 1.05704 1.70184 1.21500 0.80722 1.00467 1.01251 1.22322 0.98277 0.84045 0.97387 1.86878 1.19584 1.40571 1.81343 1.22685 0.80118 0.95801 0.98960 0.86103 1.21979 0.87478 0.99026 0.92416 1.44287 1.13030 1.49643 1.25335 1.19742 0.93059 1.29530 1.05475 0.90669 1.25679 1.02017 0.99689 0.94336 1.70810 1.04307 1.41812 1.37779 0.83634 0.74923 0.76816 0.75926 1.21895 1.21743 1.21739 1.22223 0.93301 0.95276 0.90263 1.22024 0.92727 0.86069 1.00601 0.89189 0.91970 0.92157 0.91761 0.88997 0.88821 0.75780 0.92111 0.90581 0.90334 0.91605 0.88993 0.87418 0.92331 0.91830 0.95283 0.91964 0.94175 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.20 37.16 0.34 -0.99 16 2 C -0.14 -1.34 6.42 -27.88 -0.18 -1.52 16 3 C 0.51 7.01 7.79 -10.98 -0.09 6.93 16 4 O -0.53 -9.42 15.65 5.55 0.09 -9.34 16 5 N -0.71 -9.51 4.97 -54.93 -0.27 -9.79 16 6 C 0.09 1.35 1.95 -69.08 -0.14 1.21 16 7 H 0.15 2.60 3.45 -51.93 -0.18 2.42 16 8 C -0.16 -1.96 9.32 37.16 0.35 -1.61 16 9 C 0.52 8.40 6.08 -10.98 -0.07 8.33 16 10 O -0.54 -9.60 15.18 5.56 0.08 -9.51 16 11 N -0.59 -9.24 3.08 -169.00 -0.52 -9.76 16 12 C 0.08 1.18 6.28 -5.39 -0.03 1.14 16 13 C 0.06 0.81 6.74 36.64 0.25 1.05 16 14 O -0.37 -5.97 10.25 -34.36 -0.35 -6.33 16 15 C 0.08 1.46 3.92 -26.26 -0.10 1.35 16 16 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 17 C 0.12 2.65 4.89 -3.21 -0.02 2.63 16 18 N -0.59 -14.67 3.38 -171.41 -0.58 -15.25 16 19 C -0.35 -9.87 9.98 -15.06 -0.15 -10.02 16 20 H 0.08 2.15 8.02 -52.49 -0.42 1.73 16 21 C -0.01 -0.42 5.03 -17.43 -0.09 -0.51 16 22 N -0.91 -27.08 12.68 55.49 0.70 -26.37 16 23 Si 1.06 25.34 30.03 -169.99 -5.11 20.24 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.12 2.31 5.04 -3.41 -0.02 2.29 16 28 C 0.09 1.46 2.77 -68.66 -0.19 1.27 16 29 H 0.09 1.22 5.32 -51.93 -0.28 0.94 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.41 4.77 7.77 -40.82 -0.32 4.46 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.89 4.87 -51.93 -0.25 0.63 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.35 7.19 -51.93 -0.37 0.98 16 41 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.95 6.73 -51.93 -0.35 0.60 16 43 H 0.06 1.60 7.50 -51.93 -0.39 1.21 16 44 H 0.03 0.72 5.16 -51.93 -0.27 0.46 16 45 H 0.27 8.05 5.90 -40.82 -0.24 7.81 16 46 H 0.04 0.87 4.68 -51.93 -0.24 0.63 16 47 H 0.05 0.95 8.06 -51.93 -0.42 0.53 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -34.19 357.93 -7.44 -41.63 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -6.75 Total: 7.51 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -0.13 Total: 11.57 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.67 Total: -61.17 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.18 Total: -25.18 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.11 Total: 20.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.19 -7.44 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217966563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.023 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds