Wall clock time and date at job start Tue Mar 31 2020 06:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 N 1.46507 * 109.46803 * 175.00213 * 4 2 1 6 6 C 1.46755 * 124.35107 * 89.99712 * 5 4 2 7 7 C 1.54480 * 105.47688 * 197.01368 * 6 5 4 8 8 C 1.54632 * 101.76295 * 334.58713 * 7 6 5 9 9 C 1.34416 * 124.34402 * 269.69578 * 5 4 2 10 10 O 1.21282 * 124.94788 * 359.57740 * 9 5 4 11 11 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 12 12 C 1.34777 * 120.00075 * 84.99755 * 11 2 1 13 13 O 1.21353 * 119.99688 * 359.97438 * 12 11 2 14 14 C 1.49452 * 120.00155 * 179.97438 * 12 11 2 15 15 O 1.21343 * 119.99746 * 359.97438 * 14 12 11 16 16 N 1.34782 * 119.99864 * 180.02562 * 14 12 11 17 17 C 1.46500 * 119.99783 * 180.02562 * 16 14 12 18 18 C 1.52993 * 109.46804 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.46742 * 179.97438 * 18 17 16 20 20 C 1.50708 * 109.47162 * 179.97438 * 19 18 17 21 21 H 1.08000 * 119.99914 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00040 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00132 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99856 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46842 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46964 * 120.00245 * 24 22 20 27 27 H 1.48499 * 109.46893 * 240.00096 * 24 22 20 28 28 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47142 * 294.99397 * 4 2 1 32 32 H 1.08990 * 109.47170 * 54.99895 * 4 2 1 33 33 H 1.09001 * 110.24743 * 316.02080 * 6 5 4 34 34 H 1.09009 * 110.24517 * 77.92714 * 6 5 4 35 35 H 1.09002 * 110.96664 * 92.70099 * 7 6 5 36 36 H 1.08997 * 110.97627 * 216.47037 * 7 6 5 37 37 H 1.08998 * 110.49098 * 143.47277 * 8 7 6 38 38 H 1.09003 * 110.48394 * 265.98578 * 8 7 6 39 39 H 0.96997 * 120.00274 * 264.99726 * 11 2 1 40 40 H 0.96997 * 119.99943 * 359.97438 * 16 14 12 41 41 H 1.09005 * 109.46519 * 299.99925 * 17 16 14 42 42 H 1.08995 * 109.46786 * 59.99512 * 17 16 14 43 43 H 1.08996 * 109.47347 * 299.99414 * 18 17 16 44 44 H 1.08999 * 109.47529 * 60.00453 * 18 17 16 45 45 H 1.08999 * 109.47297 * 299.99674 * 19 18 17 46 46 H 1.08999 * 109.47144 * 60.00126 * 19 18 17 47 47 H 0.96998 * 120.00115 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.4249 0.1771 1.7303 7 6 5.7895 -0.1232 1.0715 8 6 5.6567 -1.6285 0.7435 9 6 4.1647 -1.8571 0.6403 10 8 3.6441 -2.8278 0.1327 11 7 2.0183 -0.6906 -1.1962 12 6 2.1469 -0.0183 -2.3572 13 8 1.8578 1.1591 -2.4117 14 6 2.6456 -0.7226 -3.5773 15 8 2.9351 -1.8997 -3.5226 16 7 2.7748 -0.0501 -4.7382 17 6 3.2631 -0.7407 -5.9344 18 6 3.3157 0.2428 -7.1052 19 6 3.8262 -0.4783 -8.3543 20 6 3.8775 0.4902 -9.5078 21 1 3.5764 1.5174 -9.3642 22 6 4.3097 0.0652 -10.7461 23 7 4.6768 -1.1855 -10.9209 24 14 4.3739 1.2659 -12.1758 25 1 3.9124 2.6021 -11.7209 26 1 5.7689 1.3678 -12.6744 27 1 3.4918 0.7824 -13.2682 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 4.0903 1.1800 1.4648 34 1 4.4977 0.0789 2.8135 35 1 5.9215 0.4639 0.1627 36 1 6.6073 0.0530 1.7702 37 1 6.1468 -1.8575 -0.2028 38 1 6.0787 -2.2326 1.5466 39 1 2.2490 -1.6317 -1.1527 40 1 2.5437 0.8910 -4.7818 41 1 4.2622 -1.1332 -5.7448 42 1 2.5903 -1.5624 -6.1795 43 1 2.3168 0.6357 -7.2949 44 1 3.9887 1.0643 -6.8598 45 1 4.8252 -0.8709 -8.1644 46 1 3.1535 -1.3000 -8.5999 47 1 4.9812 -1.4844 -11.7920 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321874058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:15 Heat of formation + Delta-G solvation = -121.342064 kcal Electronic energy + Delta-G solvation = -27678.122316 eV Core-core repulsion = 23667.321457 eV Total energy + Delta-G solvation = -4010.800859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.06324 -40.34009 -38.56746 -36.87823 -36.31033 -35.50100 -33.36640 -32.80790 -31.21405 -31.02610 -27.97459 -27.21658 -26.74974 -24.88732 -22.89771 -22.43465 -21.40746 -20.71380 -20.23643 -19.77442 -18.34922 -17.25275 -17.18100 -16.74859 -16.36273 -15.98127 -15.68640 -15.58255 -14.98442 -14.73516 -14.43328 -14.22654 -14.11487 -14.01194 -13.81969 -13.52145 -13.41776 -12.96446 -12.89133 -12.54826 -12.30620 -12.27718 -11.90660 -11.86043 -11.76454 -11.68533 -11.50722 -11.42123 -10.92045 -10.73865 -10.57036 -10.13940 -9.88412 -9.73948 -9.51541 -9.34598 -9.13126 -9.08757 -8.91826 -8.37178 -6.01559 -4.04501 1.48521 2.22038 2.36308 2.57222 3.29538 3.30823 3.38302 3.42240 3.71644 3.93790 4.03869 4.23813 4.39327 4.44849 4.53929 4.57867 4.63882 4.77890 4.87031 4.99852 5.05141 5.15914 5.27565 5.30639 5.34429 5.42644 5.51966 5.54970 5.63466 5.72724 5.78102 5.99707 6.11547 6.15750 6.33177 6.56866 6.66161 6.73465 6.97431 7.00346 7.47959 7.63689 7.75366 7.77511 7.83225 7.97132 8.13080 8.38352 9.02306 9.59826 11.09806 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.002188 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.871160 B =12792.700345 C =13359.117302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.122 3.878 3 H 0.094 0.906 4 C 0.116 3.884 5 N -0.622 5.622 6 C 0.102 3.898 7 C -0.133 4.133 8 C -0.157 4.157 9 C 0.516 3.484 10 O -0.522 6.522 11 N -0.697 5.697 12 C 0.509 3.491 13 O -0.525 6.525 14 C 0.496 3.504 15 O -0.518 6.518 16 N -0.693 5.693 17 C 0.114 3.886 18 C -0.122 4.122 19 C 0.024 3.976 20 C -0.521 4.521 21 H 0.056 0.944 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.419 0.581 40 H 0.410 0.590 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 3.633 32.198 32.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 H 0.112 0.888 4 C -0.006 4.006 5 N -0.357 5.357 6 C -0.021 4.021 7 C -0.171 4.171 8 C -0.197 4.197 9 C 0.305 3.695 10 O -0.398 6.398 11 N -0.353 5.353 12 C 0.290 3.710 13 O -0.401 6.401 14 C 0.275 3.725 15 O -0.394 6.394 16 N -0.345 5.345 17 C -0.008 4.008 18 C -0.160 4.160 19 C -0.014 4.014 20 C -0.560 4.560 21 H 0.075 0.925 22 C -0.145 4.145 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.258 0.742 40 H 0.246 0.754 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.876 2.974 31.795 32.063 hybrid contribution 0.046 0.695 -0.845 1.095 sum -2.830 3.669 30.950 31.295 Atomic orbital electron populations 1.22147 0.93910 1.02926 1.03297 1.21532 0.94888 0.97961 0.84014 0.88804 1.21775 0.78860 1.02713 0.97296 1.48266 1.05822 1.22486 1.59137 1.22114 0.89169 0.92537 0.98295 1.22602 0.96805 0.95458 1.02212 1.22342 0.94088 0.97802 1.05446 1.21014 0.90154 0.81790 0.76579 1.90759 1.74334 1.30563 1.44103 1.45987 1.65244 1.15666 1.08444 1.20378 0.78737 0.86942 0.84918 1.90734 1.48964 1.15400 1.85012 1.20051 0.80417 0.87270 0.84735 1.90801 1.48640 1.15160 1.84816 1.46052 1.64261 1.14942 1.09275 1.21830 0.99637 0.96435 0.82910 1.21917 1.01380 0.97795 0.94890 1.19041 0.96584 0.95764 0.89992 1.21239 1.43859 0.96413 0.94457 0.92532 1.25031 0.95367 0.95187 0.98912 1.69973 1.44421 1.15330 1.23582 0.86521 0.77649 0.81304 0.82435 1.19734 1.21003 1.20995 0.91050 0.91262 0.91848 0.88323 0.89041 0.90250 0.90847 0.89806 0.88978 0.87674 0.87753 0.74151 0.75447 0.91172 0.91142 0.92458 0.92482 0.96190 0.96186 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.48 37.16 0.35 -0.82 16 2 C 0.12 1.01 2.88 -67.93 -0.20 0.81 16 3 H 0.09 0.82 7.58 -51.93 -0.39 0.42 16 4 C 0.12 0.72 5.54 -4.04 -0.02 0.70 16 5 N -0.62 -4.50 2.80 -172.41 -0.48 -4.99 16 6 C 0.10 0.44 7.35 -3.13 -0.02 0.42 16 7 C -0.13 -0.60 7.18 -25.10 -0.18 -0.78 16 8 C -0.16 -1.08 6.86 -26.73 -0.18 -1.26 16 9 C 0.52 5.22 7.30 -10.86 -0.08 5.14 16 10 O -0.52 -7.45 15.89 5.56 0.09 -7.36 16 11 N -0.70 -8.31 4.52 -54.23 -0.25 -8.56 16 12 C 0.51 7.29 7.85 -11.58 -0.09 7.20 16 13 O -0.53 -8.00 16.14 5.49 0.09 -7.91 16 14 C 0.50 8.16 7.89 -11.58 -0.09 8.07 16 15 O -0.52 -9.91 16.48 5.50 0.09 -9.82 16 16 N -0.69 -11.06 5.55 -60.73 -0.34 -11.40 16 17 C 0.11 2.05 5.67 -4.05 -0.02 2.03 16 18 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 19 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 20 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 24 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.09 0.64 7.92 -51.93 -0.41 0.22 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.19 8.14 -51.92 -0.42 -0.23 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.42 5.63 5.87 -40.82 -0.24 5.39 16 40 H 0.41 5.93 7.94 -40.82 -0.32 5.61 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -35.37 393.96 -8.05 -43.42 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.67 Total: 4.31 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.23 Total: 5.95 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.33 Total: -51.15 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: 0.27 Total: -25.09 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.37 -8.05 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321874058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.927 kcal (2) G-P(sol) polarization free energy of solvation -35.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds