Wall clock time and date at job start Tue Mar 31 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.33394 * 2 1 4 4 C 1.54485 * 110.37425 * 122.24952 * 2 1 3 5 5 C 1.54505 * 104.06500 * 142.80852 * 4 2 1 6 6 H 1.09001 * 110.51456 * 241.22118 * 5 4 2 7 7 N 1.46495 * 110.51128 * 118.64454 * 5 4 2 8 8 C 1.34781 * 120.00114 * 155.00235 * 7 5 4 9 9 O 1.21354 * 119.99819 * 359.97438 * 8 7 5 10 10 C 1.49450 * 120.00193 * 180.02562 * 8 7 5 11 11 O 1.21352 * 119.99849 * 6.48131 * 10 8 7 12 12 N 1.34772 * 120.00141 * 186.48019 * 10 8 7 13 13 C 1.47078 * 120.88412 * 178.47260 * 12 10 8 14 14 C 1.53236 * 108.52289 * 231.21008 * 13 12 10 15 15 N 1.46900 * 109.34118 * 306.16609 * 14 13 12 16 16 C 1.46893 * 111.00490 * 187.25193 * 15 14 13 17 17 C 1.50693 * 109.47445 * 169.99907 * 16 15 14 18 18 H 1.07999 * 119.99973 * 359.72901 * 17 16 15 19 19 C 1.37880 * 120.00323 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99836 * 359.73189 * 19 17 16 21 21 Si 1.86798 * 120.00222 * 179.72592 * 19 17 16 22 22 H 1.48502 * 109.47103 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47208 * 120.00227 * 21 19 17 24 24 H 1.48504 * 109.47353 * 240.00453 * 21 19 17 25 25 C 1.46902 * 111.26742 * 63.10498 * 15 14 13 26 26 C 1.47082 * 120.88150 * 358.49549 * 12 10 8 27 27 C 1.54480 * 104.06402 * 359.97438 * 5 4 2 28 28 O 1.44429 * 104.80302 * 336.01995 * 27 5 4 29 29 H 1.09000 * 109.47251 * 297.74800 * 1 2 3 30 30 H 1.08997 * 109.47464 * 57.75442 * 1 2 3 31 31 H 1.09010 * 109.47011 * 177.75084 * 1 2 3 32 32 H 1.09003 * 110.50876 * 24.16337 * 4 2 1 33 33 H 1.08995 * 110.62370 * 261.51436 * 4 2 1 34 34 H 0.96995 * 119.99993 * 335.00398 * 7 5 4 35 35 H 1.08998 * 109.63135 * 111.49466 * 13 12 10 36 36 H 1.09000 * 109.62727 * 350.91984 * 13 12 10 37 37 H 1.08994 * 109.49454 * 186.21062 * 14 13 12 38 38 H 1.08995 * 109.49692 * 66.12525 * 14 13 12 39 39 H 1.09007 * 109.47007 * 50.00546 * 16 15 14 40 40 H 1.09001 * 109.47580 * 290.00678 * 16 15 14 41 41 H 0.96998 * 120.00396 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.49011 * 56.85563 * 25 15 14 43 43 H 1.09000 * 109.49529 * 176.94152 * 25 15 14 44 44 H 1.08997 * 109.62924 * 248.49961 * 26 12 10 45 45 H 1.09004 * 109.62626 * 9.08265 * 26 12 10 46 46 H 1.09001 * 110.37382 * 94.85200 * 27 5 4 47 47 H 1.09005 * 110.37483 * 217.19031 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7728 1.2248 5 6 3.3178 -1.5050 0.6875 6 1 3.1965 -2.5844 0.7781 7 7 4.5181 -1.0628 1.4014 8 6 5.5935 -1.8719 1.4773 9 8 5.5671 -2.9667 0.9546 10 6 6.8178 -1.4211 2.2062 11 8 6.8044 -0.3794 2.8285 12 7 7.9369 -2.1714 2.1722 13 6 9.1627 -1.7301 2.8547 14 6 10.3263 -1.8018 1.8601 15 7 10.3890 -3.1504 1.2811 16 6 11.5917 -3.3128 0.4536 17 6 11.7524 -4.7638 0.0799 18 1 11.0353 -5.4932 0.4265 19 6 12.8175 -5.1610 -0.7003 20 7 13.6904 -4.2727 -1.1227 21 14 13.0209 -6.9608 -1.1571 22 1 11.9134 -7.7508 -0.5615 23 1 12.9906 -7.1029 -2.6349 24 1 14.3199 -7.4595 -0.6383 25 6 9.1755 -3.4571 0.5120 26 6 7.9648 -3.4531 1.4514 27 6 3.3870 -1.0886 -0.7985 28 8 2.0322 -0.7258 -1.1436 29 1 -0.3634 0.4785 0.9095 30 1 -0.3634 0.5483 -0.8691 31 1 -0.3633 -1.0270 -0.0403 32 1 1.3276 -1.4903 1.5788 33 1 2.3426 -0.0836 2.0232 34 1 4.5390 -0.1879 1.8196 35 1 9.3652 -2.3839 3.7029 36 1 9.0398 -0.7039 3.2010 37 1 11.2607 -1.5843 2.3772 38 1 10.1713 -1.0718 1.0657 39 1 12.4661 -2.9832 1.0149 40 1 11.4938 -2.7132 -0.4514 41 1 14.4400 -4.5521 -1.6713 42 1 9.0366 -2.7039 -0.2636 43 1 9.2754 -4.4400 0.0515 44 1 8.0522 -4.2726 2.1647 45 1 7.0498 -3.5661 0.8698 46 1 4.0520 -0.2339 -0.9225 47 1 3.7238 -1.9246 -1.4116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336534039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:51 Heat of formation + Delta-G solvation = -83.103817 kcal Electronic energy + Delta-G solvation = -28150.524520 eV Core-core repulsion = 24141.381796 eV Total energy + Delta-G solvation = -4009.142724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17083 -40.00363 -38.62939 -37.64893 -35.42104 -34.24738 -32.57727 -32.40905 -30.82754 -30.52247 -28.43613 -26.50512 -26.08369 -24.43397 -23.30625 -22.33513 -21.76529 -21.29238 -20.85766 -19.48908 -17.70922 -17.47658 -16.68686 -16.37086 -16.16035 -16.02660 -15.85003 -15.42145 -14.91679 -14.76835 -14.51309 -14.30002 -14.21554 -13.76533 -13.71700 -13.52771 -13.08035 -12.86783 -12.66356 -12.55937 -12.38664 -12.08408 -11.96394 -11.66351 -11.54592 -11.28136 -11.25148 -11.06184 -10.85426 -10.73569 -10.61827 -10.51646 -10.28688 -9.92998 -9.60484 -9.28182 -9.07504 -8.63382 -8.46451 -7.33253 -6.06087 -4.07788 1.27475 2.13006 3.06859 3.28088 3.29673 3.37265 3.41984 3.55346 3.95670 4.18080 4.19757 4.39793 4.44604 4.60746 4.71304 4.84591 4.88285 5.07200 5.17099 5.26469 5.29042 5.29286 5.38036 5.41346 5.45822 5.52228 5.57032 5.64713 5.67954 5.73205 5.81937 5.93020 6.20156 6.24336 6.35604 6.45565 6.52724 6.61017 6.79218 7.21150 7.26899 7.31883 7.59141 7.74973 7.88381 8.01373 8.11919 8.47730 8.99888 9.56825 11.04797 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.002489 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.214039 B =11245.647006 C =12165.035100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 H 0.072 0.928 4 C -0.159 4.159 5 C 0.110 3.890 6 H 0.111 0.889 7 N -0.695 5.695 8 C 0.514 3.486 9 O -0.501 6.501 10 C 0.503 3.497 11 O -0.537 6.537 12 N -0.567 5.567 13 C 0.113 3.887 14 C 0.041 3.959 15 N -0.537 5.537 16 C 0.193 3.807 17 C -0.508 4.508 18 H 0.065 0.935 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.052 3.948 26 C 0.056 3.944 27 C 0.035 3.965 28 O -0.366 6.366 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.414 0.586 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.027 0.973 39 H 0.031 0.969 40 H -0.009 1.009 41 H 0.261 0.739 42 H 0.022 0.978 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.148 0.852 46 H 0.067 0.933 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.102 9.363 5.531 26.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.090 0.910 4 C -0.197 4.197 5 C 0.005 3.995 6 H 0.129 0.871 7 N -0.350 5.350 8 C 0.296 3.704 9 O -0.377 6.377 10 C 0.284 3.716 11 O -0.416 6.416 12 N -0.299 5.299 13 C -0.009 4.009 14 C -0.088 4.088 15 N -0.263 5.263 16 C 0.068 3.932 17 C -0.547 4.547 18 H 0.083 0.917 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.077 4.077 26 C -0.065 4.065 27 C -0.044 4.044 28 O -0.284 6.284 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.251 0.749 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.009 0.991 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.164 0.836 46 H 0.085 0.915 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.038 8.744 5.560 26.176 hybrid contribution 0.634 0.084 -0.584 0.866 sum -23.403 8.827 4.976 25.503 Atomic orbital electron populations 1.21814 0.92822 1.03213 1.02629 1.23016 0.95710 0.95544 0.84706 0.90988 1.23320 0.96937 1.00488 0.98971 1.22490 0.83585 1.01663 0.91797 0.87059 1.45847 1.13301 1.20616 1.55187 1.20421 0.84670 0.84900 0.80386 1.90409 1.80233 1.20715 1.46318 1.19821 0.84504 0.84641 0.82588 1.90728 1.83593 1.23576 1.43679 1.48198 1.10204 1.21667 1.49817 1.21964 0.82334 1.01110 0.95480 1.22391 0.97561 0.91855 0.96993 1.62129 1.03945 1.22766 1.37416 1.19734 0.85942 0.97277 0.90248 1.21179 1.09890 0.92962 1.30631 0.91701 1.25002 0.95786 0.97837 0.96032 1.69965 1.14038 1.33543 1.36205 0.86433 0.78084 0.84848 0.78013 1.19588 1.21111 1.21023 1.22354 0.89055 1.02508 0.93777 1.23486 1.03376 0.82982 0.96661 1.23880 0.84750 1.01053 0.94675 1.89211 1.26796 1.74337 1.38098 0.90991 0.91671 0.91539 0.89008 0.89405 0.74926 0.90185 0.89174 0.89786 0.95510 0.95062 0.99093 0.92941 0.95943 0.88333 0.90726 0.83571 0.91522 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.52 37.16 0.35 -0.40 16 2 C 0.07 0.44 3.92 -25.95 -0.10 0.34 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.16 -0.90 6.39 -25.16 -0.16 -1.06 16 5 C 0.11 0.87 3.48 -66.37 -0.23 0.64 16 6 H 0.11 0.99 7.55 -51.93 -0.39 0.59 16 7 N -0.69 -6.35 5.08 -52.72 -0.27 -6.62 16 8 C 0.51 6.39 7.81 -11.58 -0.09 6.30 16 9 O -0.50 -7.01 12.68 5.49 0.07 -6.94 16 10 C 0.50 7.25 7.77 -11.59 -0.09 7.16 16 11 O -0.54 -8.30 15.95 5.50 0.09 -8.22 16 12 N -0.57 -8.75 3.01 -172.97 -0.52 -9.27 16 13 C 0.11 1.72 6.59 -3.60 -0.02 1.69 16 14 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 15 N -0.54 -11.33 4.62 -235.77 -1.09 -12.42 16 16 C 0.19 4.94 4.72 -4.98 -0.02 4.92 16 17 C -0.51 -14.00 8.40 -34.44 -0.29 -14.29 16 18 H 0.06 1.76 7.14 -52.49 -0.37 1.39 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 21 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.05 1.00 5.46 -3.70 -0.02 0.98 16 26 C 0.06 0.89 6.36 -3.60 -0.02 0.87 16 27 C 0.03 0.30 7.35 37.93 0.28 0.58 16 28 O -0.37 -3.45 11.34 -35.23 -0.40 -3.85 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.09 0.45 7.87 -51.93 -0.41 0.05 16 33 H 0.09 0.39 7.70 -51.93 -0.40 -0.01 16 34 H 0.41 3.25 7.87 -40.82 -0.32 2.93 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.09 1.28 7.07 -51.93 -0.37 0.92 16 37 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 40 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.10 2.03 6.67 -51.93 -0.35 1.68 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.15 2.28 3.92 -56.53 -0.22 2.06 16 46 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 47 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -31.72 375.20 -8.73 -40.45 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.44 Total: 0.65 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -0.54 Total: 9.88 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -1.14 Total: -54.04 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.24 Total: -19.01 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.72 -8.73 -40.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336534039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.658 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds